data_7F1X # _model_server_result.job_id cTdjtEZ775Iy2GFHaYQOjw _model_server_result.datetime_utc '2024-11-28 20:12:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 7F1X # _exptl.entry_id 7F1X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 100.116 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTANEDIAL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F1X _cell.length_a 167.566 _cell.length_b 187.702 _cell.length_c 190.817 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H 2 1 C,I,J 3 1 D,K,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 L N N # _chem_comp.formula 'C5 H8 O2' _chem_comp.formula_weight 100.116 _chem_comp.id PTD _chem_comp.mon_nstd_flag . _chem_comp.name PENTANEDIAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PTD sing 325 n n C1 O1 PTD doub 326 n n C1 HC1 PTD sing 327 n n C2 C3 PTD sing 328 n n C2 HC21 PTD sing 329 n n C2 HC22 PTD sing 330 n n C3 C4 PTD sing 331 n n C3 HC31 PTD sing 332 n n C3 HC32 PTD sing 333 n n C4 C5 PTD sing 334 n n C4 HC41 PTD sing 335 n n C4 HC42 PTD sing 336 n n C5 O5 PTD doub 337 n n C5 HC5 PTD sing 338 n n # _atom_sites.entry_id 7F1X _atom_sites.fract_transf_matrix[1][1] 0.005968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 I3P A 1 501 501 I3P I3P . F 3 PTD A 1 502 502 PTD PTD . G 2 I3P B 1 501 501 I3P I3P . H 3 PTD B 1 502 502 PTD PTD . I 2 I3P C 1 501 501 I3P I3P . J 4 EDO C 1 502 502 EDO EDO . K 2 I3P D 1 501 501 I3P I3P . L 3 PTD D 1 502 502 PTD PTD . M 5 HOH A 1 601 601 HOH HOH . M 5 HOH A 2 602 602 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTD . . . F 3 138.8 223.701 201.575 1 45 ? C1 PTD 502 A 1 HETATM 2 C C2 PTD . . . F 3 137.27 223.607 201.787 1 40.56 ? C2 PTD 502 A 1 HETATM 3 C C3 PTD . . . F 3 136.919 223.419 203.214 1 38.37 ? C3 PTD 502 A 1 HETATM 4 C C4 PTD . . . F 3 135.386 223.357 203.461 1 41.46 ? C4 PTD 502 A 1 HETATM 5 C C5 PTD . . . F 3 135.053 223.421 204.965 1 48.6 ? C5 PTD 502 A 1 HETATM 6 O O1 PTD . . . F 3 139.342 224.714 201.695 1 47.21 ? O1 PTD 502 A 1 HETATM 7 O O5 PTD . . . F 3 135.131 222.344 205.722 1 49.25 ? O5 PTD 502 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #