data_7F2S # _model_server_result.job_id mFvzuI_5JbvuxedCcfUBeQ _model_server_result.datetime_utc '2024-11-26 06:54:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 7F2S # _exptl.entry_id 7F2S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7F2S _cell.length_a 76.058 _cell.length_b 76.058 _cell.length_c 378.891 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 P N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf2 A SG CYS 143 A CYS 143 1_555 A SG CYS 198 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 92 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 138 B CYS 138 1_555 B SG CYS 198 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 7F2S _atom_sites.fract_transf_matrix[1][1] 0.013148 _atom_sites.fract_transf_matrix[1][2] 0.007591 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002639 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 301 1 GOL GOL . D 3 GOL A 1 302 2 GOL GOL . E 3 GOL A 1 303 4 GOL GOL . F 3 GOL A 1 304 6 GOL GOL . G 3 GOL A 1 305 7 GOL GOL . H 3 GOL A 1 306 8 GOL GOL . I 3 GOL A 1 307 9 GOL GOL . J 4 SO4 A 1 308 3 SO4 SO4 . K 4 SO4 A 1 309 4 SO4 SO4 . L 5 EDO A 1 310 3 EDO EDO . M 5 EDO A 1 311 5 EDO EDO . N 5 EDO A 1 312 6 EDO EDO . O 6 CL A 1 313 1 CL CL . P 3 GOL B 1 301 3 GOL GOL . Q 3 GOL B 1 302 5 GOL GOL . R 4 SO4 B 1 303 1 SO4 SO4 . S 4 SO4 B 1 304 2 SO4 SO4 . T 4 SO4 B 1 305 5 SO4 SO4 . U 5 EDO B 1 306 1 EDO EDO . V 5 EDO B 1 307 2 EDO EDO . W 5 EDO B 1 308 4 EDO EDO . X 7 HOH A 1 401 8 HOH HOH . X 7 HOH A 2 402 5 HOH HOH . X 7 HOH A 3 403 14 HOH HOH . X 7 HOH A 4 404 16 HOH HOH . X 7 HOH A 5 405 23 HOH HOH . X 7 HOH A 6 406 28 HOH HOH . X 7 HOH A 7 407 10 HOH HOH . X 7 HOH A 8 408 19 HOH HOH . X 7 HOH A 9 409 7 HOH HOH . X 7 HOH A 10 410 11 HOH HOH . X 7 HOH A 11 411 18 HOH HOH . X 7 HOH A 12 412 12 HOH HOH . X 7 HOH A 13 413 15 HOH HOH . X 7 HOH A 14 414 34 HOH HOH . X 7 HOH A 15 415 3 HOH HOH . X 7 HOH A 16 416 2 HOH HOH . X 7 HOH A 17 417 25 HOH HOH . X 7 HOH A 18 418 31 HOH HOH . X 7 HOH A 19 419 1 HOH HOH . X 7 HOH A 20 420 6 HOH HOH . X 7 HOH A 21 421 17 HOH HOH . X 7 HOH A 22 422 13 HOH HOH . X 7 HOH A 23 423 33 HOH HOH . X 7 HOH A 24 424 27 HOH HOH . X 7 HOH A 25 425 22 HOH HOH . X 7 HOH A 26 426 37 HOH HOH . X 7 HOH A 27 427 32 HOH HOH . X 7 HOH A 28 428 26 HOH HOH . Y 7 HOH B 1 401 24 HOH HOH . Y 7 HOH B 2 402 4 HOH HOH . Y 7 HOH B 3 403 36 HOH HOH . Y 7 HOH B 4 404 9 HOH HOH . Y 7 HOH B 5 405 29 HOH HOH . Y 7 HOH B 6 406 35 HOH HOH . Y 7 HOH B 7 407 21 HOH HOH . Y 7 HOH B 8 408 20 HOH HOH . Y 7 HOH B 9 409 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 11.698 50.04 -32.521 0.65 114.07 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . G 3 11.304 49.957 -33.867 0.65 117.03 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . G 3 10.433 50.322 -31.658 0.65 115.15 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . G 3 9.599 49.207 -31.556 0.5 117.95 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . G 3 10.988 50.783 -30.278 0.65 115.1 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . G 3 10.217 50.154 -29.294 0.65 117.3 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #