data_7F2X # _model_server_result.job_id TYqGlOgdfiCb8Kde4MPhPg _model_server_result.datetime_utc '2024-12-26 11:46:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7F2X # _exptl.entry_id 7F2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F2X _cell.length_a 49.498 _cell.length_b 156.504 _cell.length_c 179.156 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7F2X _atom_sites.fract_transf_matrix[1][1] 0.020203 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005582 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 501 ANP ANP . C 3 HOH A 1 601 39 HOH HOH . C 3 HOH A 2 602 50 HOH HOH . C 3 HOH A 3 603 33 HOH HOH . C 3 HOH A 4 604 32 HOH HOH . C 3 HOH A 5 605 44 HOH HOH . C 3 HOH A 6 606 34 HOH HOH . C 3 HOH A 7 607 35 HOH HOH . C 3 HOH A 8 608 17 HOH HOH . C 3 HOH A 9 609 23 HOH HOH . C 3 HOH A 10 610 22 HOH HOH . C 3 HOH A 11 611 27 HOH HOH . C 3 HOH A 12 612 4 HOH HOH . C 3 HOH A 13 613 20 HOH HOH . C 3 HOH A 14 614 8 HOH HOH . C 3 HOH A 15 615 6 HOH HOH . C 3 HOH A 16 616 10 HOH HOH . C 3 HOH A 17 617 38 HOH HOH . C 3 HOH A 18 618 36 HOH HOH . C 3 HOH A 19 619 1 HOH HOH . C 3 HOH A 20 620 19 HOH HOH . C 3 HOH A 21 621 5 HOH HOH . C 3 HOH A 22 622 9 HOH HOH . C 3 HOH A 23 623 28 HOH HOH . C 3 HOH A 24 624 37 HOH HOH . C 3 HOH A 25 625 16 HOH HOH . C 3 HOH A 26 626 7 HOH HOH . C 3 HOH A 27 627 29 HOH HOH . C 3 HOH A 28 628 25 HOH HOH . C 3 HOH A 29 629 21 HOH HOH . C 3 HOH A 30 630 3 HOH HOH . C 3 HOH A 31 631 30 HOH HOH . C 3 HOH A 32 632 49 HOH HOH . C 3 HOH A 33 633 2 HOH HOH . C 3 HOH A 34 634 40 HOH HOH . C 3 HOH A 35 635 11 HOH HOH . C 3 HOH A 36 636 47 HOH HOH . C 3 HOH A 37 637 12 HOH HOH . C 3 HOH A 38 638 18 HOH HOH . C 3 HOH A 39 639 24 HOH HOH . C 3 HOH A 40 640 15 HOH HOH . C 3 HOH A 41 641 53 HOH HOH . C 3 HOH A 42 642 14 HOH HOH . C 3 HOH A 43 643 45 HOH HOH . C 3 HOH A 44 644 13 HOH HOH . C 3 HOH A 45 645 26 HOH HOH . C 3 HOH A 46 646 52 HOH HOH . C 3 HOH A 47 647 41 HOH HOH . C 3 HOH A 48 648 46 HOH HOH . C 3 HOH A 49 649 48 HOH HOH . C 3 HOH A 50 650 43 HOH HOH . C 3 HOH A 51 651 51 HOH HOH . C 3 HOH A 52 652 31 HOH HOH . C 3 HOH A 53 653 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -5.367 8.586 25.193 0.5 39.67 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . B 2 -3.897 8.32 25.398 0.5 40.13 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . B 2 -5.671 9.911 24.548 0.5 32.18 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . B 2 -6.122 7.425 24.602 0.5 28.95 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . B 2 -7.27 9.84 27.158 1 72.43 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . B 2 -7.05 11.083 26.348 1 73.66 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . B 2 -8.579 9.12 27.018 1 66.92 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . B 2 -5.982 8.72 26.816 1 124.61 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . B 2 -6.253 11.434 29.255 1 69.12 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . B 2 -5.469 10.908 30.421 1 70.74 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . B 2 -5.553 12.131 28.128 1 70.24 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . B 2 -7.138 10.217 28.704 1 155.21 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . B 2 -7.425 12.376 29.789 1 49.6 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . B 2 -8.282 11.877 30.803 1 48.57 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . B 2 -9.447 12.832 30.972 1 46.87 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . B 2 -9.081 13.849 31.898 1 44.16 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . B 2 -9.795 13.553 29.684 1 46.27 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . B 2 -10.751 12.835 28.905 1 47.46 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . B 2 -10.361 14.858 30.183 1 44.12 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . B 2 -11.752 14.713 30.463 1 42.96 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . B 2 -9.651 15.087 31.498 1 43.03 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . B 2 -8.558 16.054 31.284 1 40.75 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . B 2 -7.365 15.766 30.746 1 40.13 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . B 2 -6.594 16.87 30.658 1 39.73 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . B 2 -7.313 17.898 31.126 1 39.06 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . B 2 -7.1 19.345 31.312 1 38.6 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . B 2 -5.933 19.925 30.966 1 39.2 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . B 2 -8.112 20.064 31.833 1 39.5 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . B 2 -9.277 19.497 32.177 1 39.86 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . B 2 -9.539 18.191 32.039 1 40.2 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . B 2 -8.613 17.356 31.527 1 39.84 ? C4 ANP 501 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #