data_7F35 # _model_server_result.job_id Epk18-usysK8Tm3saXO7mg _model_server_result.datetime_utc '2024-11-04 23:28:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":304}' # _entry.id 7F35 # _exptl.entry_id 7F35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F35 _cell.length_a 184.071 _cell.length_b 184.071 _cell.length_c 100.66 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K,L,M,N,O,P,KA,LA 1 1 C,D,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,MA,NA 2 1 E,F,DA,EA,FA,GA,HA,IA,JA,OA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id HA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 21 1_555 A SG CYS 92 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf2 A SG CYS 138 A CYS 136 1_555 A SG CYS 198 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf4 B SG CYS 143 B CYS 143 1_555 B SG CYS 198 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 C SG CYS 23 C CYS 21 1_555 C SG CYS 92 C CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf6 C SG CYS 138 C CYS 136 1_555 C SG CYS 198 C CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf8 D SG CYS 143 D CYS 143 1_555 D SG CYS 198 D CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf9 E SG CYS 23 E CYS 21 1_555 E SG CYS 92 E CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf10 E SG CYS 138 E CYS 136 1_555 E SG CYS 198 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 F SG CYS 22 F CYS 22 1_555 F SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf12 F SG CYS 143 F CYS 143 1_555 F SG CYS 198 F CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 B OG SER 17 B SER 17 1_555 O NA NA . B NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? metalc ? metalc2 D OG SER 25 D SER 25 1_555 BA NA NA . D NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc3 D OE1 GLU 46 D GLU 46 1_555 CA NA NA . D NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 7F35 _atom_sites.fract_transf_matrix[1][1] 0.005433 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005433 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009934 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 GFN A 1 301 2 GFN LIG . H 4 EDO A 1 302 1 EDO EDO . I 4 EDO A 1 303 3 EDO EDO . J 5 NA A 1 304 8 NA NA . K 6 SO4 B 1 301 6 SO4 SO4 . L 4 EDO B 1 302 5 EDO EDO . M 4 EDO B 1 303 6 EDO EDO . N 4 EDO B 1 304 8 EDO EDO . O 5 NA B 1 305 6 NA NA . P 5 NA B 1 306 7 NA NA . Q 3 GFN C 1 301 1 GFN LIG . R 6 SO4 C 1 302 5 SO4 SO4 . S 6 SO4 C 1 303 7 SO4 SO4 . T 7 GOL C 1 304 1 GOL GOL . U 7 GOL C 1 305 2 GOL GOL . V 4 EDO C 1 306 4 EDO EDO . W 5 NA C 1 307 1 NA NA . X 5 NA C 1 308 2 NA NA . Y 8 CL C 1 309 1 CL CL . Z 6 SO4 D 1 301 4 SO4 SO4 . AA 5 NA D 1 302 3 NA NA . BA 5 NA D 1 303 4 NA NA . CA 5 NA D 1 304 5 NA NA . DA 3 GFN E 1 301 3 GFN LIG . EA 6 SO4 F 1 301 1 SO4 SO4 . FA 6 SO4 F 1 302 2 SO4 SO4 . GA 6 SO4 F 1 303 3 SO4 SO4 . HA 9 CIT F 1 304 1 CIT CIT . IA 4 EDO F 1 305 2 EDO EDO . JA 4 EDO F 1 306 7 EDO EDO . KA 10 HOH A 1 401 7 HOH HOH . KA 10 HOH A 2 402 10 HOH HOH . KA 10 HOH A 3 403 16 HOH HOH . KA 10 HOH A 4 404 33 HOH HOH . KA 10 HOH A 5 405 18 HOH HOH . KA 10 HOH A 6 406 31 HOH HOH . KA 10 HOH A 7 407 26 HOH HOH . LA 10 HOH B 1 401 42 HOH HOH . LA 10 HOH B 2 402 25 HOH HOH . LA 10 HOH B 3 403 12 HOH HOH . LA 10 HOH B 4 404 37 HOH HOH . LA 10 HOH B 5 405 44 HOH HOH . LA 10 HOH B 6 406 6 HOH HOH . LA 10 HOH B 7 407 11 HOH HOH . LA 10 HOH B 8 408 43 HOH HOH . LA 10 HOH B 9 409 24 HOH HOH . LA 10 HOH B 10 410 19 HOH HOH . LA 10 HOH B 11 411 27 HOH HOH . MA 10 HOH C 1 401 28 HOH HOH . MA 10 HOH C 2 402 35 HOH HOH . MA 10 HOH C 3 403 21 HOH HOH . MA 10 HOH C 4 404 36 HOH HOH . MA 10 HOH C 5 405 38 HOH HOH . MA 10 HOH C 6 406 22 HOH HOH . MA 10 HOH C 7 407 14 HOH HOH . MA 10 HOH C 8 408 4 HOH HOH . MA 10 HOH C 9 409 45 HOH HOH . MA 10 HOH C 10 410 5 HOH HOH . MA 10 HOH C 11 411 40 HOH HOH . MA 10 HOH C 12 412 29 HOH HOH . NA 10 HOH D 1 401 34 HOH HOH . NA 10 HOH D 2 402 13 HOH HOH . NA 10 HOH D 3 403 2 HOH HOH . NA 10 HOH D 4 404 3 HOH HOH . NA 10 HOH D 5 405 1 HOH HOH . NA 10 HOH D 6 406 23 HOH HOH . NA 10 HOH D 7 407 30 HOH HOH . NA 10 HOH D 8 408 20 HOH HOH . NA 10 HOH D 9 409 9 HOH HOH . NA 10 HOH D 10 410 17 HOH HOH . NA 10 HOH D 11 411 41 HOH HOH . NA 10 HOH D 12 412 15 HOH HOH . NA 10 HOH D 13 413 39 HOH HOH . OA 10 HOH F 1 401 32 HOH HOH . OA 10 HOH F 2 402 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . HA 9 64.129 -51.806 5.12 1 82.47 ? C1 CIT 304 F 1 HETATM 2 O O1 CIT . . . HA 9 64.221 -51.67 3.872 1 81.84 ? O1 CIT 304 F 1 HETATM 3 O O2 CIT . . . HA 9 63.976 -50.772 5.833 1 74.42 ? O2 CIT 304 F 1 HETATM 4 C C2 CIT . . . HA 9 64.215 -53.198 5.748 1 83.82 ? C2 CIT 304 F 1 HETATM 5 C C3 CIT . . . HA 9 62.814 -53.73 5.813 1 77.19 ? C3 CIT 304 F 1 HETATM 6 O O7 CIT . . . HA 9 62.215 -52.575 6.431 1 78.1 ? O7 CIT 304 F 1 HETATM 7 C C4 CIT . . . HA 9 62.251 -54.067 4.432 1 79.74 ? C4 CIT 304 F 1 HETATM 8 C C5 CIT . . . HA 9 62.939 -55.045 3.514 1 81.82 ? C5 CIT 304 F 1 HETATM 9 O O3 CIT . . . HA 9 63.647 -54.576 2.593 1 83.42 ? O3 CIT 304 F 1 HETATM 10 O O4 CIT . . . HA 9 62.746 -56.289 3.612 1 82.88 ? O4 CIT 304 F 1 HETATM 11 C C6 CIT . . . HA 9 62.455 -54.874 6.734 1 83.69 ? C6 CIT 304 F 1 HETATM 12 O O5 CIT . . . HA 9 61.914 -55.917 6.24 1 79.71 ? O5 CIT 304 F 1 HETATM 13 O O6 CIT . . . HA 9 62.653 -54.723 7.977 1 80.74 ? O6 CIT 304 F 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 13 #