data_7F3M # _model_server_result.job_id W3Fzf5opnsqOL4EJZkk5Jg _model_server_result.datetime_utc '2025-07-02 14:30:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 7F3M # _exptl.entry_id 7F3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 561.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[2,6-bis(chloranyl)-3,5-dimethoxy-phenyl]-2-(methylamino)-8-[3-(4-prop-2-enoylpiperazin-1-yl)propyl]pyrido[2,3-d]pyrimidin-7-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.65 _cell.angle_gamma 90 _cell.entry_id 7F3M _cell.length_a 42.449 _cell.length_b 61.1 _cell.length_c 61.041 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H30 Cl2 N6 O4' _chem_comp.formula_weight 561.46 _chem_comp.id GX3 _chem_comp.mon_nstd_flag . _chem_comp.name 6-[2,6-bis(chloranyl)-3,5-dimethoxy-phenyl]-2-(methylamino)-8-[3-(4-prop-2-enoylpiperazin-1-yl)propyl]pyrido[2,3-d]pyrimidin-7-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PRN1371 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C24 GX3 doub 129 n n C16 O3 GX3 sing 130 n n C24 C25 GX3 sing 131 n n C24 N6 GX3 sing 132 n n C25 C26 GX3 doub 133 n n O3 C12 GX3 sing 134 n n N6 C21 GX3 sing 135 n n N6 C22 GX3 sing 136 n n C21 C20 GX3 sing 137 n n C12 C13 GX3 doub 138 n y C12 C11 GX3 sing 139 n y C13 C14 GX3 sing 140 n y C17 O2 GX3 sing 141 n n C22 C23 GX3 sing 142 n n C20 N5 GX3 sing 143 n n CL1 C11 GX3 sing 144 n n C11 C10 GX3 doub 145 n y C14 O2 GX3 sing 146 n n C14 C15 GX3 doub 147 n y C23 N5 GX3 sing 148 n n N5 C19 GX3 sing 149 n n C10 C15 GX3 sing 150 n y C10 C7 GX3 sing 151 n n C15 CL2 GX3 sing 152 n n O1 C6 GX3 doub 153 n n C19 C18 GX3 sing 154 n n C18 C9 GX3 sing 155 n n C7 C6 GX3 sing 156 n n C7 C8 GX3 doub 157 n n C6 N4 GX3 sing 158 n n C8 C1 GX3 sing 159 n n N4 C9 GX3 sing 160 n n N4 C2 GX3 sing 161 n n C1 C2 GX3 doub 162 n y C1 C3 GX3 sing 163 n y C2 N2 GX3 sing 164 n y N2 C4 GX3 doub 165 n y C3 N1 GX3 doub 166 n y C4 N1 GX3 sing 167 n y C4 N3 GX3 sing 168 n n C5 N3 GX3 sing 169 n n N3 H1 GX3 sing 170 n n C5 H2 GX3 sing 171 n n C5 H3 GX3 sing 172 n n C5 H4 GX3 sing 173 n n C8 H5 GX3 sing 174 n n C3 H6 GX3 sing 175 n n C9 H8 GX3 sing 176 n n C9 H9 GX3 sing 177 n n C13 H10 GX3 sing 178 n n C16 H11 GX3 sing 179 n n C16 H12 GX3 sing 180 n n C16 H13 GX3 sing 181 n n C17 H14 GX3 sing 182 n n C17 H15 GX3 sing 183 n n C17 H16 GX3 sing 184 n n C18 H17 GX3 sing 185 n n C18 H18 GX3 sing 186 n n C19 H19 GX3 sing 187 n n C19 H20 GX3 sing 188 n n C20 H21 GX3 sing 189 n n C20 H22 GX3 sing 190 n n C21 H23 GX3 sing 191 n n C21 H24 GX3 sing 192 n n C22 H25 GX3 sing 193 n n C22 H26 GX3 sing 194 n n C23 H27 GX3 sing 195 n n C23 H28 GX3 sing 196 n n C25 H29 GX3 sing 197 n n C26 H31 GX3 sing 198 n n C26 H32 GX3 sing 199 n n # _atom_sites.entry_id 7F3M _atom_sites.fract_transf_matrix[1][1] 0.023558 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003165 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GX3 A 1 801 800 GX3 DRG . C 3 SO4 A 1 802 900 SO4 SO4 . D 3 SO4 A 1 803 901 SO4 SO4 . E 3 SO4 A 1 804 902 SO4 SO4 . F 4 HOH A 1 1101 1101 HOH HOH . F 4 HOH A 2 1102 1142 HOH HOH . F 4 HOH A 3 1103 1054 HOH HOH . F 4 HOH A 4 1104 1146 HOH HOH . F 4 HOH A 5 1105 1105 HOH HOH . F 4 HOH A 6 1106 1060 HOH HOH . F 4 HOH A 7 1107 1018 HOH HOH . F 4 HOH A 8 1108 1115 HOH HOH . F 4 HOH A 9 1109 1004 HOH HOH . F 4 HOH A 10 1110 1116 HOH HOH . F 4 HOH A 11 1111 1140 HOH HOH . F 4 HOH A 12 1112 1028 HOH HOH . F 4 HOH A 13 1113 1014 HOH HOH . F 4 HOH A 14 1114 1046 HOH HOH . F 4 HOH A 15 1115 1005 HOH HOH . F 4 HOH A 16 1116 1026 HOH HOH . F 4 HOH A 17 1117 1002 HOH HOH . F 4 HOH A 18 1118 1034 HOH HOH . F 4 HOH A 19 1119 1071 HOH HOH . F 4 HOH A 20 1120 1103 HOH HOH . F 4 HOH A 21 1121 1025 HOH HOH . F 4 HOH A 22 1122 1089 HOH HOH . F 4 HOH A 23 1123 1100 HOH HOH . F 4 HOH A 24 1124 1120 HOH HOH . F 4 HOH A 25 1125 1008 HOH HOH . F 4 HOH A 26 1126 1138 HOH HOH . F 4 HOH A 27 1127 1010 HOH HOH . F 4 HOH A 28 1128 1065 HOH HOH . F 4 HOH A 29 1129 1099 HOH HOH . F 4 HOH A 30 1130 1067 HOH HOH . F 4 HOH A 31 1131 1016 HOH HOH . F 4 HOH A 32 1132 1027 HOH HOH . F 4 HOH A 33 1133 1032 HOH HOH . F 4 HOH A 34 1134 1121 HOH HOH . F 4 HOH A 35 1135 1012 HOH HOH . F 4 HOH A 36 1136 1110 HOH HOH . F 4 HOH A 37 1137 1022 HOH HOH . F 4 HOH A 38 1138 1112 HOH HOH . F 4 HOH A 39 1139 1063 HOH HOH . F 4 HOH A 40 1140 1000 HOH HOH . F 4 HOH A 41 1141 1050 HOH HOH . F 4 HOH A 42 1142 1007 HOH HOH . F 4 HOH A 43 1143 1013 HOH HOH . F 4 HOH A 44 1144 1106 HOH HOH . F 4 HOH A 45 1145 1066 HOH HOH . F 4 HOH A 46 1146 1006 HOH HOH . F 4 HOH A 47 1147 1077 HOH HOH . F 4 HOH A 48 1148 1047 HOH HOH . F 4 HOH A 49 1149 1011 HOH HOH . F 4 HOH A 50 1150 1036 HOH HOH . F 4 HOH A 51 1151 1133 HOH HOH . F 4 HOH A 52 1152 1040 HOH HOH . F 4 HOH A 53 1153 1043 HOH HOH . F 4 HOH A 54 1154 1038 HOH HOH . F 4 HOH A 55 1155 1009 HOH HOH . F 4 HOH A 56 1156 1131 HOH HOH . F 4 HOH A 57 1157 1059 HOH HOH . F 4 HOH A 58 1158 1092 HOH HOH . F 4 HOH A 59 1159 1093 HOH HOH . F 4 HOH A 60 1160 1049 HOH HOH . F 4 HOH A 61 1161 1029 HOH HOH . F 4 HOH A 62 1162 1144 HOH HOH . F 4 HOH A 63 1163 1041 HOH HOH . F 4 HOH A 64 1164 1094 HOH HOH . F 4 HOH A 65 1165 1042 HOH HOH . F 4 HOH A 66 1166 1122 HOH HOH . F 4 HOH A 67 1167 1037 HOH HOH . F 4 HOH A 68 1168 1045 HOH HOH . F 4 HOH A 69 1169 1080 HOH HOH . F 4 HOH A 70 1170 1070 HOH HOH . F 4 HOH A 71 1171 1039 HOH HOH . F 4 HOH A 72 1172 1017 HOH HOH . F 4 HOH A 73 1173 1062 HOH HOH . F 4 HOH A 74 1174 1048 HOH HOH . F 4 HOH A 75 1175 1001 HOH HOH . F 4 HOH A 76 1176 1064 HOH HOH . F 4 HOH A 77 1177 1141 HOH HOH . F 4 HOH A 78 1178 1051 HOH HOH . F 4 HOH A 79 1179 1019 HOH HOH . F 4 HOH A 80 1180 1031 HOH HOH . F 4 HOH A 81 1181 1074 HOH HOH . F 4 HOH A 82 1182 1024 HOH HOH . F 4 HOH A 83 1183 1021 HOH HOH . F 4 HOH A 84 1184 1119 HOH HOH . F 4 HOH A 85 1185 1061 HOH HOH . F 4 HOH A 86 1186 1056 HOH HOH . F 4 HOH A 87 1187 1143 HOH HOH . F 4 HOH A 88 1188 1111 HOH HOH . F 4 HOH A 89 1189 1030 HOH HOH . F 4 HOH A 90 1190 1003 HOH HOH . F 4 HOH A 91 1191 1072 HOH HOH . F 4 HOH A 92 1192 1096 HOH HOH . F 4 HOH A 93 1193 1145 HOH HOH . F 4 HOH A 94 1194 1023 HOH HOH . F 4 HOH A 95 1195 1068 HOH HOH . F 4 HOH A 96 1196 1058 HOH HOH . F 4 HOH A 97 1197 1044 HOH HOH . F 4 HOH A 98 1198 1126 HOH HOH . F 4 HOH A 99 1199 1102 HOH HOH . F 4 HOH A 100 1200 1078 HOH HOH . F 4 HOH A 101 1201 1123 HOH HOH . F 4 HOH A 102 1202 1086 HOH HOH . F 4 HOH A 103 1203 1136 HOH HOH . F 4 HOH A 104 1204 1084 HOH HOH . F 4 HOH A 105 1205 1125 HOH HOH . F 4 HOH A 106 1206 1052 HOH HOH . F 4 HOH A 107 1207 1083 HOH HOH . F 4 HOH A 108 1208 1090 HOH HOH . F 4 HOH A 109 1209 1053 HOH HOH . F 4 HOH A 110 1210 1081 HOH HOH . F 4 HOH A 111 1211 1075 HOH HOH . F 4 HOH A 112 1212 1117 HOH HOH . F 4 HOH A 113 1213 1057 HOH HOH . F 4 HOH A 114 1214 1114 HOH HOH . F 4 HOH A 115 1215 1137 HOH HOH . F 4 HOH A 116 1216 1015 HOH HOH . F 4 HOH A 117 1217 1129 HOH HOH . F 4 HOH A 118 1218 1098 HOH HOH . F 4 HOH A 119 1219 1073 HOH HOH . F 4 HOH A 120 1220 1076 HOH HOH . F 4 HOH A 121 1221 1108 HOH HOH . F 4 HOH A 122 1222 1033 HOH HOH . F 4 HOH A 123 1223 1097 HOH HOH . F 4 HOH A 124 1224 1134 HOH HOH . F 4 HOH A 125 1225 1082 HOH HOH . F 4 HOH A 126 1226 1087 HOH HOH . F 4 HOH A 127 1227 1085 HOH HOH . F 4 HOH A 128 1228 1147 HOH HOH . F 4 HOH A 129 1229 1130 HOH HOH . F 4 HOH A 130 1230 1109 HOH HOH . F 4 HOH A 131 1231 1035 HOH HOH . F 4 HOH A 132 1232 1020 HOH HOH . F 4 HOH A 133 1233 1132 HOH HOH . F 4 HOH A 134 1234 1091 HOH HOH . F 4 HOH A 135 1235 1107 HOH HOH . F 4 HOH A 136 1236 1055 HOH HOH . F 4 HOH A 137 1237 1088 HOH HOH . F 4 HOH A 138 1238 1135 HOH HOH . F 4 HOH A 139 1239 1104 HOH HOH . F 4 HOH A 140 1240 1069 HOH HOH . F 4 HOH A 141 1241 1113 HOH HOH . F 4 HOH A 142 1242 1095 HOH HOH . F 4 HOH A 143 1243 1079 HOH HOH . F 4 HOH A 144 1244 1139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GX3 . . . B 2 90.647 3.879 83.95 1 27.65 ? N1 GX3 801 A 1 HETATM 2 C C2 GX3 . . . B 2 89.872 1.929 82.212 1 26.16 ? C2 GX3 801 A 1 HETATM 3 N N3 GX3 . . . B 2 88.565 3.769 84.942 1 29.16 ? N3 GX3 801 A 1 HETATM 4 C C4 GX3 . . . B 2 89.419 3.343 84.018 1 26.39 ? C4 GX3 801 A 1 HETATM 5 C C5 GX3 . . . B 2 87.133 3.598 84.652 1 23.48 ? C5 GX3 801 A 1 HETATM 6 C C6 GX3 . . . B 2 90.252 0.48 80.408 1 29.67 ? C6 GX3 801 A 1 HETATM 7 C C8 GX3 . . . B 2 91.997 1.969 81.113 1 22.24 ? C8 GX3 801 A 1 HETATM 8 CL CL1 GX3 . . . B 2 93.063 -1.624 80.835 1 24.2 ? CL1 GX3 801 A 1 HETATM 9 CL CL2 GX3 . . . B 2 91.587 2.664 77.929 1 35.45 ? CL2 GX3 801 A 1 HETATM 10 C C1 GX3 . . . B 2 91.148 2.447 82.099 1 23.22 ? C1 GX3 801 A 1 HETATM 11 O O1 GX3 . . . B 2 89.835 -0.402 79.658 1 34.08 ? O1 GX3 801 A 1 HETATM 12 N N2 GX3 . . . B 2 89.04 2.382 83.161 1 28.4 ? N2 GX3 801 A 1 HETATM 13 O O2 GX3 . . . B 2 93.386 1.636 75.968 1 34.25 ? O2 GX3 801 A 1 HETATM 14 C C3 GX3 . . . B 2 91.551 3.44 82.978 1 24.1 ? C3 GX3 801 A 1 HETATM 15 O O3 GX3 . . . B 2 94.703 -2.203 78.575 1 30.96 ? O3 GX3 801 A 1 HETATM 16 N N4 GX3 . . . B 2 89.456 0.973 81.376 1 24.72 ? N4 GX3 801 A 1 HETATM 17 O O4 GX3 . . . B 2 82.411 -2.751 76.612 1 71.27 ? O4 GX3 801 A 1 HETATM 18 N N5 GX3 . . . B 2 85.923 0.051 78.622 1 52.2 ? N5 GX3 801 A 1 HETATM 19 N N6 GX3 . . . B 2 84.377 -1.719 76.879 1 67.83 ? N6 GX3 801 A 1 HETATM 20 C C7 GX3 . . . B 2 91.546 0.968 80.261 1 27.5 ? C7 GX3 801 A 1 HETATM 21 C C9 GX3 . . . B 2 88.09 0.463 81.567 1 29.16 ? C9 GX3 801 A 1 HETATM 22 C C10 GX3 . . . B 2 92.399 0.499 79.264 1 28.88 ? C10 GX3 801 A 1 HETATM 23 C C11 GX3 . . . B 2 93.156 -0.663 79.404 1 30.72 ? C11 GX3 801 A 1 HETATM 24 C C12 GX3 . . . B 2 93.999 -1.058 78.37 1 34.38 ? C12 GX3 801 A 1 HETATM 25 C C13 GX3 . . . B 2 94.107 -0.317 77.199 1 39.4 ? C13 GX3 801 A 1 HETATM 26 C C14 GX3 . . . B 2 93.352 0.84 77.074 1 33.97 ? C14 GX3 801 A 1 HETATM 27 C C15 GX3 . . . B 2 92.508 1.245 78.098 1 31.57 ? C15 GX3 801 A 1 HETATM 28 C C16 GX3 . . . B 2 95.617 -2.449 77.499 1 27.96 ? C16 GX3 801 A 1 HETATM 29 C C17 GX3 . . . B 2 94.505 1.339 75.124 1 36.1 ? C17 GX3 801 A 1 HETATM 30 C C18 GX3 . . . B 2 87.134 1.015 80.528 1 43.64 ? C18 GX3 801 A 1 HETATM 31 C C19 GX3 . . . B 2 86.349 -0.177 80.002 1 58.4 ? C19 GX3 801 A 1 HETATM 32 C C20 GX3 . . . B 2 84.451 0.016 78.588 1 61.01 ? C20 GX3 801 A 1 HETATM 33 C C21 GX3 . . . B 2 83.93 -1.372 78.253 1 67.7 ? C21 GX3 801 A 1 HETATM 34 C C22 GX3 . . . B 2 85.721 -1.203 76.508 1 61.64 ? C22 GX3 801 A 1 HETATM 35 C C23 GX3 . . . B 2 86.531 -0.991 77.77 1 54.87 ? C23 GX3 801 A 1 HETATM 36 C C24 GX3 . . . B 2 83.498 -2.438 76.131 1 74.16 ? C24 GX3 801 A 1 HETATM 37 C C25 GX3 . . . B 2 83.761 -2.883 74.656 1 71.65 ? C25 GX3 801 A 1 HETATM 38 C C26 GX3 . . . B 2 85.042 -2.567 73.87 1 75.73 ? C26 GX3 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 38 #