data_7F3W
#
_model_server_result.job_id            uJsfj8iGUm6njVhO7bQ4-g 
_model_server_result.datetime_utc      '2025-07-02 00:44:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7f3w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":501}' 
#
_entry.id    7F3W 
#
_exptl.entry_id    7F3W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7F3W 
_cell.length_a            426.822 
_cell.length_b            63.896 
_cell.length_c            95.958 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7F3W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G 1 1 
B,H,I,J,K 2 1 
C,L,M,N,O 3 1 
D,P,Q,R 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 L N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 405 A CYS 405 1_555 E FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc2 D SG CYS 405 D CYS 405 1_555 P FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     7F3W 
_atom_sites.fract_transf_matrix[1][1]    0.002343 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01565 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010421 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 501 501 HEM HEM . 
F 3 SO4 A 1 502 1 SO4 SO4 . 
G 3 SO4 A 1 503 6 SO4 SO4 . 
H 2 HEM B 1 501 501 HEM HEM . 
I 3 SO4 B 1 502 4 SO4 SO4 . 
J 3 SO4 B 1 503 5 SO4 SO4 . 
K 3 SO4 B 1 504 10 SO4 SO4 . 
L 2 HEM C 1 501 501 HEM HEM . 
M 3 SO4 C 1 502 2 SO4 SO4 . 
N 3 SO4 C 1 503 8 SO4 SO4 . 
O 3 SO4 C 1 504 9 SO4 SO4 . 
P 2 HEM D 1 501 501 HEM HEM . 
Q 3 SO4 D 1 502 3 SO4 SO4 . 
R 3 SO4 D 1 503 7 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . L 2 -105.179 41.617 25.843 1 26.32 ? CHA HEM 501 C 1 
HETATM 2 C CHB HEM . . . L 2 -100.336 41.956 26.072 1 24.3 ? CHB HEM 501 C 1 
HETATM 3 C CHC HEM . . . L 2 -100.428 41.497 30.892 1 26.79 ? CHC HEM 501 C 1 
HETATM 4 C CHD HEM . . . L 2 -105.169 40.887 30.641 1 27.15 ? CHD HEM 501 C 1 
HETATM 5 C C1A HEM . . . L 2 -103.86 41.805 25.467 1 22.36 ? C1A HEM 501 C 1 
HETATM 6 C C2A HEM . . . L 2 -103.378 42.132 24.128 1 21.1 ? C2A HEM 501 C 1 
HETATM 7 C C3A HEM . . . L 2 -102.054 42.209 24.207 1 18.76 ? C3A HEM 501 C 1 
HETATM 8 C C4A HEM . . . L 2 -101.639 41.964 25.58 1 23.62 ? C4A HEM 501 C 1 
HETATM 9 C CMA HEM . . . L 2 -101.116 42.524 23.029 1 22.13 ? CMA HEM 501 C 1 
HETATM 10 C CAA HEM . . . L 2 -104.229 42.288 22.822 1 26.99 ? CAA HEM 501 C 1 
HETATM 11 C CBA HEM . . . L 2 -104.524 40.863 22.298 1 24.06 ? CBA HEM 501 C 1 
HETATM 12 C CGA HEM . . . L 2 -105.306 40.726 21.014 1 27.25 ? CGA HEM 501 C 1 
HETATM 13 O O1A HEM . . . L 2 -105.626 39.528 20.717 1 25.58 ? O1A HEM 501 C 1 
HETATM 14 O O2A HEM . . . L 2 -105.591 41.755 20.309 1 27.66 ? O2A HEM 501 C 1 
HETATM 15 C C1B HEM . . . L 2 -99.954 41.892 27.395 1 20.41 ? C1B HEM 501 C 1 
HETATM 16 C C2B HEM . . . L 2 -98.614 42.085 27.894 1 17.58 ? C2B HEM 501 C 1 
HETATM 17 C C3B HEM . . . L 2 -98.652 41.955 29.224 1 20.34 ? C3B HEM 501 C 1 
HETATM 18 C C4B HEM . . . L 2 -100.015 41.688 29.597 1 23.81 ? C4B HEM 501 C 1 
HETATM 19 C CMB HEM . . . L 2 -97.39 42.381 26.989 1 20 ? CMB HEM 501 C 1 
HETATM 20 C CAB HEM . . . L 2 -97.49 42.079 30.242 1 22.39 ? CAB HEM 501 C 1 
HETATM 21 C CBB HEM . . . L 2 -96.299 42.553 29.86 1 21.81 ? CBB HEM 501 C 1 
HETATM 22 C C1C HEM . . . L 2 -101.729 41.294 31.245 1 27.72 ? C1C HEM 501 C 1 
HETATM 23 C C2C HEM . . . L 2 -102.194 41.114 32.592 1 25.22 ? C2C HEM 501 C 1 
HETATM 24 C C3C HEM . . . L 2 -103.506 40.94 32.513 1 25.06 ? C3C HEM 501 C 1 
HETATM 25 C C4C HEM . . . L 2 -103.897 41.012 31.124 1 24.34 ? C4C HEM 501 C 1 
HETATM 26 C CMC HEM . . . L 2 -101.26 41.126 33.822 1 28.51 ? CMC HEM 501 C 1 
HETATM 27 C CAC HEM . . . L 2 -104.499 40.715 33.659 1 31.05 ? CAC HEM 501 C 1 
HETATM 28 C CBC HEM . . . L 2 -104.07 40.741 34.917 1 37.06 ? CBC HEM 501 C 1 
HETATM 29 C C1D HEM . . . L 2 -105.548 41.061 29.336 1 26.27 ? C1D HEM 501 C 1 
HETATM 30 C C2D HEM . . . L 2 -106.928 41.02 28.917 1 30.68 ? C2D HEM 501 C 1 
HETATM 31 C C3D HEM . . . L 2 -106.97 41.208 27.586 1 29.58 ? C3D HEM 501 C 1 
HETATM 32 C C4D HEM . . . L 2 -105.592 41.382 27.134 1 28 ? C4D HEM 501 C 1 
HETATM 33 C CMD HEM . . . L 2 -108.1 40.772 29.896 1 29.02 ? CMD HEM 501 C 1 
HETATM 34 C CAD HEM . . . L 2 -108.256 41.265 26.713 1 31.77 ? CAD HEM 501 C 1 
HETATM 35 C CBD HEM . . . L 2 -108.728 42.734 26.685 1 31.4 ? CBD HEM 501 C 1 
HETATM 36 C CGD HEM . . . L 2 -110.093 43.019 26.079 1 28.27 ? CGD HEM 501 C 1 
HETATM 37 O O1D HEM . . . L 2 -110.265 42.746 24.846 1 26.02 ? O1D HEM 501 C 1 
HETATM 38 O O2D HEM . . . L 2 -110.965 43.556 26.848 1 25.15 ? O2D HEM 501 C 1 
HETATM 39 N NA HEM . . . L 2 -102.777 41.718 26.331 1 23.8 ? NA HEM 501 C 1 
HETATM 40 N NB HEM . . . L 2 -100.798 41.658 28.454 1 23.39 ? NB HEM 501 C 1 
HETATM 41 N NC HEM . . . L 2 -102.784 41.232 30.359 1 25.57 ? NC HEM 501 C 1 
HETATM 42 N ND HEM . . . L 2 -104.742 41.283 28.229 1 27.73 ? ND HEM 501 C 1 
HETATM 43 FE FE HEM . . . L 2 -102.822 41.738 28.342 1 16.06 ? FE HEM 501 C 1 
HETATM 44 H HHB HEM . . . L 2 -99.616 42.002 25.408 1 28.87 ? HHB HEM 501 C 1 
HETATM 45 H HHC HEM . . . L 2 -99.751 41.507 31.6 1 31.87 ? HHC HEM 501 C 1 
HETATM 46 H HHD HEM . . . L 2 -105.871 40.653 31.284 1 32.29 ? HHD HEM 501 C 1 
HETATM 47 H HMA HEM . . . L 2 -100.701 43.401 23.167 1 26.27 ? HMA HEM 501 C 1 
HETATM 48 H HMAA HEM . . . L 2 -101.631 42.535 22.195 1 26.27 ? HMAA HEM 501 C 1 
HETATM 49 H HMAB HEM . . . L 2 -100.419 41.838 22.973 1 26.27 ? HMAB HEM 501 C 1 
HETATM 50 H HAA HEM . . . L 2 -103.73 42.79 22.158 1 32.1 ? HAA HEM 501 C 1 
HETATM 51 H HAAA HEM . . . L 2 -105.059 42.749 23.019 1 32.1 ? HAAA HEM 501 C 1 
HETATM 52 H HBA HEM . . . L 2 -105.021 40.399 22.99 1 28.59 ? HBA HEM 501 C 1 
HETATM 53 H HBAA HEM . . . L 2 -103.67 40.423 22.163 1 28.59 ? HBAA HEM 501 C 1 
HETATM 54 H HMB HEM . . . L 2 -96.688 41.737 27.174 1 23.71 ? HMB HEM 501 C 1 
HETATM 55 H HMBA HEM . . . L 2 -97.063 43.276 27.169 1 23.71 ? HMBA HEM 501 C 1 
HETATM 56 H HMBB HEM . . . L 2 -97.652 42.314 26.057 1 23.71 ? HMBB HEM 501 C 1 
HETATM 57 H HAB HEM . . . L 2 -97.627 41.813 31.154 1 26.58 ? HAB HEM 501 C 1 
HETATM 58 H HBB HEM . . . L 2 -95.577 42.627 30.504 1 25.88 ? HBB HEM 501 C 1 
HETATM 59 H HBBA HEM . . . L 2 -96.157 42.823 28.939 1 25.88 ? HBBA HEM 501 C 1 
HETATM 60 H HMC HEM . . . L 2 -101.315 40.272 34.278 1 33.93 ? HMC HEM 501 C 1 
HETATM 61 H HMCA HEM . . . L 2 -101.531 41.834 34.427 1 33.93 ? HMCA HEM 501 C 1 
HETATM 62 H HMCB HEM . . . L 2 -100.347 41.28 33.533 1 33.93 ? HMCB HEM 501 C 1 
HETATM 63 H HAC HEM . . . L 2 -105.427 40.557 33.47 1 36.97 ? HAC HEM 501 C 1 
HETATM 64 H HBC HEM . . . L 2 -103.132 40.901 35.106 1 44.19 ? HBC HEM 501 C 1 
HETATM 65 H HBCA HEM . . . L 2 -104.694 40.599 35.646 1 44.19 ? HBCA HEM 501 C 1 
HETATM 66 H HMD HEM . . . L 2 -108.029 41.389 30.654 1 34.53 ? HMD HEM 501 C 1 
HETATM 67 H HMDA HEM . . . L 2 -108.064 39.849 30.223 1 34.53 ? HMDA HEM 501 C 1 
HETATM 68 H HMDB HEM . . . L 2 -108.951 40.921 29.433 1 34.53 ? HMDB HEM 501 C 1 
HETATM 69 H HAD HEM . . . L 2 -108.059 40.963 25.812 1 37.83 ? HAD HEM 501 C 1 
HETATM 70 H HADA HEM . . . L 2 -108.945 40.702 27.1 1 37.83 ? HADA HEM 501 C 1 
HETATM 71 H HBD HEM . . . L 2 -108.745 43.052 27.601 1 37.4 ? HBD HEM 501 C 1 
HETATM 72 H HBDA HEM . . . L 2 -108.074 43.24 26.178 1 37.4 ? HBDA HEM 501 C 1 
HETATM 73 H HHA HEM . . . L 2 -105.864 41.653 25.143 1 31.3 ? HHA HEM 501 C 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           73 
#