data_7F3W
#
_model_server_result.job_id            0CjVyvBuqfkNhv24F53GvQ 
_model_server_result.datetime_utc      '2025-07-05 06:44:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7f3w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":501}' 
#
_entry.id    7F3W 
#
_exptl.entry_id    7F3W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7F3W 
_cell.length_a            426.822 
_cell.length_b            63.896 
_cell.length_c            95.958 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7F3W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G 1 1 
B,H,I,J,K 2 1 
C,L,M,N,O 3 1 
D,P,Q,R 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 L N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 405 A CYS 405 1_555 E FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc2 D SG CYS 405 D CYS 405 1_555 P FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     7F3W 
_atom_sites.fract_transf_matrix[1][1]    0.002343 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01565 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010421 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 501 501 HEM HEM . 
F 3 SO4 A 1 502 1 SO4 SO4 . 
G 3 SO4 A 1 503 6 SO4 SO4 . 
H 2 HEM B 1 501 501 HEM HEM . 
I 3 SO4 B 1 502 4 SO4 SO4 . 
J 3 SO4 B 1 503 5 SO4 SO4 . 
K 3 SO4 B 1 504 10 SO4 SO4 . 
L 2 HEM C 1 501 501 HEM HEM . 
M 3 SO4 C 1 502 2 SO4 SO4 . 
N 3 SO4 C 1 503 8 SO4 SO4 . 
O 3 SO4 C 1 504 9 SO4 SO4 . 
P 2 HEM D 1 501 501 HEM HEM . 
Q 3 SO4 D 1 502 3 SO4 SO4 . 
R 3 SO4 D 1 503 7 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . P 2 -15.027 26.076 -12.834 1 46.19 ? CHA HEM 501 D 1 
HETATM 2 C CHB HEM . . . P 2 -19.903 26.349 -12.984 1 47.54 ? CHB HEM 501 D 1 
HETATM 3 C CHC HEM . . . P 2 -19.977 23.058 -16.561 1 49.68 ? CHC HEM 501 D 1 
HETATM 4 C CHD HEM . . . P 2 -15.193 22.558 -16.124 1 54.66 ? CHD HEM 501 D 1 
HETATM 5 C C1A HEM . . . P 2 -16.329 26.44 -12.552 1 44.88 ? C1A HEM 501 D 1 
HETATM 6 C C2A HEM . . . P 2 -16.758 27.392 -11.541 1 39.57 ? C2A HEM 501 D 1 
HETATM 7 C C3A HEM . . . P 2 -18.089 27.446 -11.59 1 44.07 ? C3A HEM 501 D 1 
HETATM 8 C C4A HEM . . . P 2 -18.569 26.559 -12.643 1 46.26 ? C4A HEM 501 D 1 
HETATM 9 C CMA HEM . . . P 2 -18.992 28.33 -10.686 1 44.01 ? CMA HEM 501 D 1 
HETATM 10 C CAA HEM . . . P 2 -15.879 28.17 -10.531 1 40.37 ? CAA HEM 501 D 1 
HETATM 11 C CBA HEM . . . P 2 -15.618 27.318 -9.272 1 39.64 ? CBA HEM 501 D 1 
HETATM 12 C CGA HEM . . . P 2 -14.735 28.103 -8.316 1 39.61 ? CGA HEM 501 D 1 
HETATM 13 O O1A HEM . . . P 2 -14.289 29.212 -8.753 1 38.93 ? O1A HEM 501 D 1 
HETATM 14 O O2A HEM . . . P 2 -14.499 27.642 -7.149 1 33.84 ? O2A HEM 501 D 1 
HETATM 15 C C1B HEM . . . P 2 -20.363 25.511 -13.987 1 47.31 ? C1B HEM 501 D 1 
HETATM 16 C C2B HEM . . . P 2 -21.727 25.403 -14.451 1 42.17 ? C2B HEM 501 D 1 
HETATM 17 C C3B HEM . . . P 2 -21.75 24.487 -15.441 1 44.32 ? C3B HEM 501 D 1 
HETATM 18 C C4B HEM . . . P 2 -20.391 24 -15.635 1 48.02 ? C4B HEM 501 D 1 
HETATM 19 C CMB HEM . . . P 2 -22.876 26.232 -13.826 1 45.12 ? CMB HEM 501 D 1 
HETATM 20 C CAB HEM . . . P 2 -22.968 24.029 -16.284 1 40.54 ? CAB HEM 501 D 1 
HETATM 21 C CBB HEM . . . P 2 -24.109 24.727 -16.229 1 38.14 ? CBB HEM 501 D 1 
HETATM 22 C C1C HEM . . . P 2 -18.684 22.629 -16.749 1 49.57 ? C1C HEM 501 D 1 
HETATM 23 C C2C HEM . . . P 2 -18.265 21.646 -17.716 1 49.91 ? C2C HEM 501 D 1 
HETATM 24 C C3C HEM . . . P 2 -16.933 21.513 -17.585 1 49.59 ? C3C HEM 501 D 1 
HETATM 25 C C4C HEM . . . P 2 -16.49 22.412 -16.548 1 51.2 ? C4C HEM 501 D 1 
HETATM 26 C CMC HEM . . . P 2 -19.251 20.93 -18.673 1 44.72 ? CMC HEM 501 D 1 
HETATM 27 C CAC HEM . . . P 2 -15.941 20.608 -18.346 1 49.24 ? CAC HEM 501 D 1 
HETATM 28 C CBC HEM . . . P 2 -16.345 19.815 -19.341 1 50.3 ? CBC HEM 501 D 1 
HETATM 29 C C1D HEM . . . P 2 -14.729 23.428 -15.174 1 50.04 ? C1D HEM 501 D 1 
HETATM 30 C C2D HEM . . . P 2 -13.364 23.498 -14.688 1 51.69 ? C2D HEM 501 D 1 
HETATM 31 C C3D HEM . . . P 2 -13.317 24.466 -13.766 1 52.57 ? C3D HEM 501 D 1 
HETATM 32 C C4D HEM . . . P 2 -14.649 25.042 -13.663 1 49.68 ? C4D HEM 501 D 1 
HETATM 33 C CMD HEM . . . P 2 -12.195 22.59 -15.155 1 56.48 ? CMD HEM 501 D 1 
HETATM 34 C CAD HEM . . . P 2 -12.064 24.934 -12.974 1 50.17 ? CAD HEM 501 D 1 
HETATM 35 C CBD HEM . . . P 2 -11.21 25.922 -13.79 1 48.38 ? CBD HEM 501 D 1 
HETATM 36 C CGD HEM . . . P 2 -10.121 26.561 -12.946 1 47.12 ? CGD HEM 501 D 1 
HETATM 37 O O1D HEM . . . P 2 -10.484 27.306 -11.987 1 52.21 ? O1D HEM 501 D 1 
HETATM 38 O O2D HEM . . . P 2 -8.911 26.32 -13.229 1 45.94 ? O2D HEM 501 D 1 
HETATM 39 N NA HEM . . . P 2 -17.46 25.953 -13.209 1 45.62 ? NA HEM 501 D 1 
HETATM 40 N NB HEM . . . P 2 -19.577 24.643 -14.722 1 48.76 ? NB HEM 501 D 1 
HETATM 41 N NC HEM . . . P 2 -17.58 23.078 -16.063 1 49.72 ? NC HEM 501 D 1 
HETATM 42 N ND HEM . . . P 2 -15.486 24.378 -14.538 1 53.1 ? ND HEM 501 D 1 
HETATM 43 FE FE HEM . . . P 2 -17.56 24.297 -14.475 1 39.94 ? FE HEM 501 D 1 
HETATM 44 H HHB HEM . . . P 2 -20.577 26.837 -12.467 1 56.76 ? HHB HEM 501 D 1 
HETATM 45 H HHC HEM . . . P 2 -20.667 22.661 -17.133 1 59.33 ? HHC HEM 501 D 1 
HETATM 46 H HHD HEM . . . P 2 -14.527 21.977 -16.547 1 65.3 ? HHD HEM 501 D 1 
HETATM 47 H HMA HEM . . . P 2 -19.372 29.06 -11.217 1 52.53 ? HMA HEM 501 D 1 
HETATM 48 H HMAA HEM . . . P 2 -18.457 28.702 -9.954 1 52.53 ? HMAA HEM 501 D 1 
HETATM 49 H HMAB HEM . . . P 2 -19.717 27.784 -10.315 1 52.53 ? HMAB HEM 501 D 1 
HETATM 50 H HAA HEM . . . P 2 -16.335 28.986 -10.274 1 48.16 ? HAA HEM 501 D 1 
HETATM 51 H HAAA HEM . . . P 2 -15.031 28.39 -10.948 1 48.16 ? HAAA HEM 501 D 1 
HETATM 52 H HBA HEM . . . P 2 -15.172 26.494 -9.524 1 47.28 ? HBA HEM 501 D 1 
HETATM 53 H HBAA HEM . . . P 2 -16.461 27.11 -8.84 1 47.28 ? HBAA HEM 501 D 1 
HETATM 54 H HMB HEM . . . P 2 -22.531 26.757 -13.087 1 53.86 ? HMB HEM 501 D 1 
HETATM 55 H HMBA HEM . . . P 2 -23.568 25.634 -13.502 1 53.86 ? HMBA HEM 501 D 1 
HETATM 56 H HMBB HEM . . . P 2 -23.25 26.825 -14.497 1 53.86 ? HMBB HEM 501 D 1 
HETATM 57 H HAB HEM . . . P 2 -22.905 23.25 -16.842 1 48.37 ? HAB HEM 501 D 1 
HETATM 58 H HBB HEM . . . P 2 -24.875 24.447 -16.754 1 45.48 ? HBB HEM 501 D 1 
HETATM 59 H HBBA HEM . . . P 2 -24.17 25.514 -15.664 1 45.48 ? HBBA HEM 501 D 1 
HETATM 60 H HMC HEM . . . P 2 -20.148 21.269 -18.526 1 53.38 ? HMC HEM 501 D 1 
HETATM 61 H HMCA HEM . . . P 2 -19.234 19.976 -18.502 1 53.38 ? HMCA HEM 501 D 1 
HETATM 62 H HMCB HEM . . . P 2 -18.99 21.098 -19.592 1 53.38 ? HMCB HEM 501 D 1 
HETATM 63 H HAC HEM . . . P 2 -15.013 20.617 -18.099 1 58.81 ? HAC HEM 501 D 1 
HETATM 64 H HBC HEM . . . P 2 -17.28 19.798 -19.599 1 60.08 ? HBC HEM 501 D 1 
HETATM 65 H HBCA HEM . . . P 2 -15.704 19.254 -19.805 1 60.08 ? HBCA HEM 501 D 1 
HETATM 66 H HMD HEM . . . P 2 -12.132 22.616 -16.133 1 67.49 ? HMD HEM 501 D 1 
HETATM 67 H HMDA HEM . . . P 2 -12.358 21.669 -14.862 1 67.49 ? HMDA HEM 501 D 1 
HETATM 68 H HMDB HEM . . . P 2 -11.355 22.912 -14.766 1 67.49 ? HMDB HEM 501 D 1 
HETATM 69 H HAD HEM . . . P 2 -12.354 25.37 -12.158 1 59.92 ? HAD HEM 501 D 1 
HETATM 70 H HADA HEM . . . P 2 -11.524 24.159 -12.754 1 59.92 ? HADA HEM 501 D 1 
HETATM 71 H HBD HEM . . . P 2 -10.797 25.444 -14.526 1 57.76 ? HBD HEM 501 D 1 
HETATM 72 H HBDA HEM . . . P 2 -11.786 26.62 -14.139 1 57.76 ? HBDA HEM 501 D 1 
HETATM 73 H HHA HEM . . . P 2 -14.313 26.595 -12.409 1 55.14 ? HHA HEM 501 D 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           73 
#