data_7F44 # _model_server_result.job_id -3MG3jSZA8U_9TZHftLi8A _model_server_result.datetime_utc '2024-10-20 07:58:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f44 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7F44 # _exptl.entry_id 7F44 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F44 _cell.length_a 76.5 _cell.length_b 76.5 _cell.length_c 99.725 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F44 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 261 A GLU 248 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc2 A OE1 GLU 261 A GLU 248 1_555 C CA CA . A CA 302 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? metalc ? metalc3 A O ILE 262 A ILE 249 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc4 A O ILE 262 A ILE 249 1_555 C CA CA . A CA 302 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.179 ? metalc ? metalc5 C CA CA . A CA 302 1_555 E O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? metalc ? metalc6 C CA CA . A CA 302 1_555 E O HOH . A HOH 433 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc7 C CA CA . A CA 302 1_555 E O HOH . A HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 250 n n PA O2A NAD sing 251 n n PA O5B NAD sing 252 n n PA O3 NAD sing 253 n n O2A HOA2 NAD sing 254 n n O5B C5B NAD sing 255 n n C5B C4B NAD sing 256 n n C5B H51A NAD sing 257 n n C5B H52A NAD sing 258 n n C4B O4B NAD sing 259 n n C4B C3B NAD sing 260 n n C4B H4B NAD sing 261 n n O4B C1B NAD sing 262 n n C3B O3B NAD sing 263 n n C3B C2B NAD sing 264 n n C3B H3B NAD sing 265 n n O3B HO3A NAD sing 266 n n C2B O2B NAD sing 267 n n C2B C1B NAD sing 268 n n C2B H2B NAD sing 269 n n O2B HO2A NAD sing 270 n n C1B N9A NAD sing 271 n n C1B H1B NAD sing 272 n n N9A C8A NAD sing 273 n y N9A C4A NAD sing 274 n y C8A N7A NAD doub 275 n y C8A H8A NAD sing 276 n n N7A C5A NAD sing 277 n y C5A C6A NAD sing 278 n y C5A C4A NAD doub 279 n y C6A N6A NAD sing 280 n n C6A N1A NAD doub 281 n y N6A H61A NAD sing 282 n n N6A H62A NAD sing 283 n n N1A C2A NAD sing 284 n y C2A N3A NAD doub 285 n y C2A H2A NAD sing 286 n n N3A C4A NAD sing 287 n y O3 PN NAD sing 288 n n PN O1N NAD doub 289 n n PN O2N NAD sing 290 n n PN O5D NAD sing 291 n n O5D C5D NAD sing 292 n n C5D C4D NAD sing 293 n n C5D H51N NAD sing 294 n n C5D H52N NAD sing 295 n n C4D O4D NAD sing 296 n n C4D C3D NAD sing 297 n n C4D H4D NAD sing 298 n n O4D C1D NAD sing 299 n n C3D O3D NAD sing 300 n n C3D C2D NAD sing 301 n n C3D H3D NAD sing 302 n n O3D HO3N NAD sing 303 n n C2D O2D NAD sing 304 n n C2D C1D NAD sing 305 n n C2D H2D NAD sing 306 n n O2D HO2N NAD sing 307 n n C1D N1N NAD sing 308 n n C1D H1D NAD sing 309 n n N1N C2N NAD sing 310 n y N1N C6N NAD doub 311 n y C2N C3N NAD doub 312 n y C2N H2N NAD sing 313 n n C3N C7N NAD sing 314 n n C3N C4N NAD sing 315 n y C7N O7N NAD doub 316 n n C7N N7N NAD sing 317 n n N7N H71N NAD sing 318 n n N7N H72N NAD sing 319 n n C4N C5N NAD doub 320 n y C4N H4N NAD sing 321 n n C5N C6N NAD sing 322 n y C5N H5N NAD sing 323 n n C6N H6N NAD sing 324 n n # _atom_sites.entry_id 7F44 _atom_sites.fract_transf_matrix[1][1] 0.013072 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 301 NAD NAD . C 3 CA A 1 302 303 CA CA . D 4 GOL A 1 303 305 GOL GOL . E 5 HOH A 1 401 401 HOH HOH . E 5 HOH A 2 402 402 HOH HOH . E 5 HOH A 3 403 452 HOH HOH . E 5 HOH A 4 404 438 HOH HOH . E 5 HOH A 5 405 405 HOH HOH . E 5 HOH A 6 406 416 HOH HOH . E 5 HOH A 7 407 421 HOH HOH . E 5 HOH A 8 408 411 HOH HOH . E 5 HOH A 9 409 414 HOH HOH . E 5 HOH A 10 410 449 HOH HOH . E 5 HOH A 11 411 437 HOH HOH . E 5 HOH A 12 412 433 HOH HOH . E 5 HOH A 13 413 450 HOH HOH . E 5 HOH A 14 414 461 HOH HOH . E 5 HOH A 15 415 413 HOH HOH . E 5 HOH A 16 416 465 HOH HOH . E 5 HOH A 17 417 418 HOH HOH . E 5 HOH A 18 418 406 HOH HOH . E 5 HOH A 19 419 403 HOH HOH . E 5 HOH A 20 420 420 HOH HOH . E 5 HOH A 21 421 419 HOH HOH . E 5 HOH A 22 422 432 HOH HOH . E 5 HOH A 23 423 404 HOH HOH . E 5 HOH A 24 424 435 HOH HOH . E 5 HOH A 25 425 444 HOH HOH . E 5 HOH A 26 426 431 HOH HOH . E 5 HOH A 27 427 430 HOH HOH . E 5 HOH A 28 428 407 HOH HOH . E 5 HOH A 29 429 426 HOH HOH . E 5 HOH A 30 430 463 HOH HOH . E 5 HOH A 31 431 415 HOH HOH . E 5 HOH A 32 432 462 HOH HOH . E 5 HOH A 33 433 445 HOH HOH . E 5 HOH A 34 434 434 HOH HOH . E 5 HOH A 35 435 440 HOH HOH . E 5 HOH A 36 436 422 HOH HOH . E 5 HOH A 37 437 456 HOH HOH . E 5 HOH A 38 438 442 HOH HOH . E 5 HOH A 39 439 439 HOH HOH . E 5 HOH A 40 440 453 HOH HOH . E 5 HOH A 41 441 457 HOH HOH . E 5 HOH A 42 442 455 HOH HOH . E 5 HOH A 43 443 447 HOH HOH . E 5 HOH A 44 444 443 HOH HOH . E 5 HOH A 45 445 464 HOH HOH . E 5 HOH A 46 446 441 HOH HOH . E 5 HOH A 47 447 424 HOH HOH . E 5 HOH A 48 448 446 HOH HOH . E 5 HOH A 49 449 448 HOH HOH . E 5 HOH A 50 450 436 HOH HOH . E 5 HOH A 51 451 429 HOH HOH . E 5 HOH A 52 452 454 HOH HOH . E 5 HOH A 53 453 458 HOH HOH . E 5 HOH A 54 454 451 HOH HOH . E 5 HOH A 55 455 459 HOH HOH . E 5 HOH A 56 456 460 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 5.684 21.184 14.818 1 140.22 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . B 2 4.952 21.071 13.518 1 128.92 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . B 2 6.209 22.524 15.222 1 154.1 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . B 2 6.878 20.109 14.831 1 123.45 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . B 2 8.198 20.565 14.455 1 100 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . B 2 9.049 20.71 15.694 1 92.26 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . B 2 10.443 20.634 15.296 1 93.35 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . B 2 8.922 22.017 16.498 1 83.68 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . B 2 9.112 21.779 17.887 1 71.56 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . B 2 10.082 22.843 15.933 1 93.37 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . B 2 10.525 23.915 16.739 1 85.43 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . B 2 11.139 21.752 15.79 1 88.2 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . B 2 12.214 22.088 14.864 1 90.51 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . B 2 12.088 22.791 13.688 1 86.42 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . B 2 13.229 22.99 13.076 1 86.96 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . B 2 14.168 22.369 13.891 1 87.47 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . B 2 15.568 22.223 13.778 1 85.93 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . B 2 16.273 22.731 12.767 1 82.91 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . B 2 16.211 21.542 14.765 1 85.5 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . B 2 15.485 21.038 15.778 1 80.98 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . B 2 14.171 21.127 15.993 1 81.84 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . B 2 13.557 21.806 15 1 86.24 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . B 2 4.75 20.667 16.023 1 121.95 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . B 2 3.796 19.39 16.232 1 96.23 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . B 2 2.405 19.78 15.882 1 80.67 ? O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . B 2 4.05 18.794 17.584 1 97.28 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . B 2 4.361 18.411 15.08 1 99.58 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . B 2 5.288 17.326 15.38 1 90.39 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . B 2 5.381 16.402 14.19 1 76.69 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . B 2 4.076 15.837 13.94 1 76.21 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . B 2 5.831 17.063 12.875 1 79.78 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . B 2 6.917 16.388 12.25 1 79.08 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . B 2 4.557 17.046 12.028 1 73.58 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . B 2 4.896 16.942 10.659 1 79.96 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . B 2 3.827 15.814 12.541 1 76.45 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . B 2 2.353 15.83 12.295 1 70.17 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . B 2 1.515 16.762 12.902 1 73.19 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . B 2 0.136 16.793 12.589 1 85.62 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . B 2 -0.718 17.975 13.016 1 89.82 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . B 2 -1.779 18.22 12.429 1 84.35 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . B 2 -0.28 18.71 14.034 1 76.84 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . B 2 -0.411 15.704 11.888 1 81.81 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . B 2 0.437 14.74 11.359 1 87.31 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . B 2 1.809 14.89 11.475 1 82.04 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 46 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 430 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #