data_7F47
#
_model_server_result.job_id            2jplBVgDaA3DBN4YXJvE0w 
_model_server_result.datetime_utc      '2025-03-31 05:05:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7f47 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":901}' 
#
_entry.id    7F47 
#
_exptl.entry_id    7F47 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7F47 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7F47 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 'complete point assembly' 1 
? monomeric 1 'point asymmetric unit' 2 
? monomeric 1 'point asymmetric unit, std point frame' 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 (1-2) 
A,B,C,D 2 1 
A,B,C,D 3 P 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
P 'transform to point frame' ? ? 0.787956 -0.615732 0 0.615732 0.787956 0 0 0 1 -16.63892 -135.61307 -81.66519 
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 193.22401 193.22401 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAD C05 PGW sing 385 n n 
CAD HAD PGW sing 386 n n 
CAD HADA PGW sing 387 n n 
OAE CAD PGW sing 388 n n 
OAE HOAE PGW sing 389 n n 
OAF C05 PGW sing 390 n n 
OAF HOAF PGW sing 391 n n 
P O13 PGW sing 392 n n 
P O11 PGW sing 393 n n 
C01 O03 PGW sing 394 n n 
C01 C02 PGW sing 395 n n 
C01 H01 PGW sing 396 n n 
C01 H01A PGW sing 397 n n 
C1 C2 PGW sing 398 n n 
O01 C1 PGW sing 399 n n 
C02 O01 PGW sing 400 n n 
C02 H02 PGW sing 401 n n 
C2 C3 PGW sing 402 n n 
C2 H2 PGW sing 403 n n 
C2 H2A PGW sing 404 n n 
O02 C1 PGW doub 405 n n 
C03 C02 PGW sing 406 n n 
C03 H03 PGW sing 407 n n 
C03 H03A PGW sing 408 n n 
C3 C4 PGW sing 409 n n 
C3 H3 PGW sing 410 n n 
C3 H3A PGW sing 411 n n 
C04 C05 PGW sing 412 n n 
C04 O12 PGW sing 413 n n 
C04 H04 PGW sing 414 n n 
C04 H04A PGW sing 415 n n 
C4 C5 PGW sing 416 n n 
C4 H4 PGW sing 417 n n 
C4 H4A PGW sing 418 n n 
O04 C19 PGW doub 419 n n 
C05 H05 PGW sing 420 n n 
C5 C6 PGW sing 421 n n 
C5 H5 PGW sing 422 n n 
C5 H5A PGW sing 423 n n 
C06 C07 PGW sing 424 n n 
C06 H06 PGW sing 425 n n 
C06 H06A PGW sing 426 n n 
C6 C7 PGW sing 427 n n 
C6 H6 PGW sing 428 n n 
C6 H6A PGW sing 429 n n 
C07 H07 PGW sing 430 n n 
C07 H07A PGW sing 431 n n 
C7 C8 PGW sing 432 n n 
C7 H7 PGW sing 433 n n 
C7 H7A PGW sing 434 n n 
C08 C07 PGW sing 435 n n 
C08 H08 PGW sing 436 n n 
C08 H08A PGW sing 437 n n 
C8 C9 PGW sing 438 n n 
C8 H8 PGW sing 439 n n 
C8 H8A PGW sing 440 n n 
C09 C08 PGW sing 441 n n 
C09 C11 PGW sing 442 n n 
C09 H09 PGW sing 443 n n 
C09 H09A PGW sing 444 n n 
C9 C10 PGW doub 445 z n 
C10 C06 PGW sing 446 n n 
C11 H11 PGW sing 447 n n 
C11 H11A PGW sing 448 n n 
O11 C03 PGW sing 449 n n 
C12 C11 PGW sing 450 n n 
C12 H12 PGW sing 451 n n 
C12 H12A PGW sing 452 n n 
O12 P PGW sing 453 n n 
C13 C12 PGW sing 454 n n 
C13 C14 PGW sing 455 n n 
C13 H13 PGW sing 456 n n 
C13 H13A PGW sing 457 n n 
O13 HO13 PGW sing 458 n n 
C14 H14 PGW sing 459 n n 
C14 H14A PGW sing 460 n n 
C14 H14B PGW sing 461 n n 
O14 P PGW doub 462 n n 
C15 C16 PGW sing 463 n n 
C15 H15 PGW sing 464 n n 
C15 H15A PGW sing 465 n n 
C16 H16 PGW sing 466 n n 
C16 H16A PGW sing 467 n n 
C17 C16 PGW sing 468 n n 
C17 C18 PGW sing 469 n n 
C17 H17 PGW sing 470 n n 
C17 H17A PGW sing 471 n n 
C18 C28 PGW sing 472 n n 
C18 H18 PGW sing 473 n n 
C18 H18A PGW sing 474 n n 
C19 O03 PGW sing 475 n n 
C19 C20 PGW sing 476 n n 
C20 C21 PGW sing 477 n n 
C20 H20 PGW sing 478 n n 
C20 H20A PGW sing 479 n n 
C21 C22 PGW sing 480 n n 
C21 H21 PGW sing 481 n n 
C21 H21A PGW sing 482 n n 
C22 C23 PGW sing 483 n n 
C22 H22 PGW sing 484 n n 
C22 H22A PGW sing 485 n n 
C23 C24 PGW sing 486 n n 
C23 H23 PGW sing 487 n n 
C23 H23A PGW sing 488 n n 
C24 C25 PGW sing 489 n n 
C24 H24 PGW sing 490 n n 
C24 H24A PGW sing 491 n n 
C25 C26 PGW sing 492 n n 
C25 H25 PGW sing 493 n n 
C25 H25A PGW sing 494 n n 
C26 C27 PGW sing 495 n n 
C26 H26 PGW sing 496 n n 
C26 H26A PGW sing 497 n n 
C27 C15 PGW sing 498 n n 
C27 H27 PGW sing 499 n n 
C27 H27A PGW sing 500 n n 
C28 H28 PGW sing 501 n n 
C28 H28A PGW sing 502 n n 
C29 H29 PGW sing 503 n n 
C29 H29A PGW sing 504 n n 
C29 H29B PGW sing 505 n n 
C30 C28 PGW sing 506 n n 
C30 C29 PGW sing 507 n n 
C30 H30 PGW sing 508 n n 
C30 H30A PGW sing 509 n n 
C9 H9 PGW sing 510 n n 
C10 H10 PGW sing 511 n n 
#
_atom_sites.entry_id                     7F47 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PGW A 1 901 901 PGW PHG . 
C 3 1K1 A 1 902 902 1K1 LPG . 
D 4 HOH A 1 1001 1004 HOH HOH . 
D 4 HOH A 2 1002 1002 HOH HOH . 
D 4 HOH A 3 1003 1001 HOH HOH . 
D 4 HOH A 4 1004 1003 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAD PGW . . . B 2 113.959 60.687 111.873 1 174.29 ? CAD PGW 901 A 1 
HETATM 2 O OAE PGW . . . B 2 115.33 60.799 111.5 1 176.11 ? OAE PGW 901 A 1 
HETATM 3 O OAF PGW . . . B 2 114.19 62.65 113.187 1 168.58 ? OAF PGW 901 A 1 
HETATM 4 P P PGW . . . B 2 110.198 60.817 111.042 1 224.5 ? P PGW 901 A 1 
HETATM 5 C C01 PGW . . . B 2 112.342 64.115 107.903 1 184.31 ? C01 PGW 901 A 1 
HETATM 6 C C1 PGW . . . B 2 109.543 64.57 107.15 1 175.04 ? C1 PGW 901 A 1 
HETATM 7 O O01 PGW . . . B 2 110.024 64.717 108.405 1 192.66 ? O01 PGW 901 A 1 
HETATM 8 C C02 PGW . . . B 2 111.179 63.947 108.865 1 192.55 ? C02 PGW 901 A 1 
HETATM 9 C C2 PGW . . . B 2 109.992 65.619 106.179 1 157.16 ? C2 PGW 901 A 1 
HETATM 10 O O02 PGW . . . B 2 108.768 63.707 106.829 1 189.53 ? O02 PGW 901 A 1 
HETATM 11 C C03 PGW . . . B 2 110.787 62.498 109.074 1 195.43 ? C03 PGW 901 A 1 
HETATM 12 C C3 PGW . . . B 2 110.427 65.048 104.876 1 148.73 ? C3 PGW 901 A 1 
HETATM 13 O O03 PGW . . . B 2 113.58 64.22 108.643 1 159.98 ? O03 PGW 901 A 1 
HETATM 14 C C04 PGW . . . B 2 111.944 62.037 112.664 1 173.03 ? C04 PGW 901 A 1 
HETATM 15 C C4 PGW . . . B 2 110.753 66.113 103.841 1 134.47 ? C4 PGW 901 A 1 
HETATM 16 O O04 PGW . . . B 2 113.604 65.574 110.403 1 179.27 ? O04 PGW 901 A 1 
HETATM 17 C C05 PGW . . . B 2 113.379 62.047 112.186 1 166.05 ? C05 PGW 901 A 1 
HETATM 18 C C5 PGW . . . B 2 112.216 66.421 103.718 1 117.93 ? C5 PGW 901 A 1 
HETATM 19 C C06 PGW . . . B 2 113.846 72.997 102.915 1 140.78 ? C06 PGW 901 A 1 
HETATM 20 C C6 PGW . . . B 2 112.599 67.191 102.477 1 117.68 ? C6 PGW 901 A 1 
HETATM 21 C C07 PGW . . . B 2 113.592 73.507 101.518 1 144.38 ? C07 PGW 901 A 1 
HETATM 22 C C7 PGW . . . B 2 112.754 68.694 102.69 1 133.92 ? C7 PGW 901 A 1 
HETATM 23 C C08 PGW . . . B 2 114.802 74.09 100.81 1 128.57 ? C08 PGW 901 A 1 
HETATM 24 C C8 PGW . . . B 2 114.12 69.121 103.127 1 152.44 ? C8 PGW 901 A 1 
HETATM 25 C C09 PGW . . . B 2 116.033 73.211 100.799 1 129.29 ? C09 PGW 901 A 1 
HETATM 26 C C9 PGW . . . B 2 114.285 70.592 103.371 1 151.02 ? C9 PGW 901 A 1 
HETATM 27 C C10 PGW . . . B 2 113.461 71.56 103.075 1 135.81 ? C10 PGW 901 A 1 
HETATM 28 C C11 PGW . . . B 2 116.871 73.358 99.554 1 123.09 ? C11 PGW 901 A 1 
HETATM 29 O O11 PGW . . . B 2 110.282 62.301 110.424 1 208.16 ? O11 PGW 901 A 1 
HETATM 30 C C12 PGW . . . B 2 118.354 73.332 99.782 1 119.26 ? C12 PGW 901 A 1 
HETATM 31 O O12 PGW . . . B 2 111.249 60.817 112.263 1 203.84 ? O12 PGW 901 A 1 
HETATM 32 C C13 PGW . . . B 2 119.139 73.075 98.515 1 111.61 ? C13 PGW 901 A 1 
HETATM 33 O O13 PGW . . . B 2 110.711 59.845 110.013 1 200.92 ? O13 PGW 901 A 1 
HETATM 34 C C14 PGW . . . B 2 120.587 73.517 98.571 1 110.63 ? C14 PGW 901 A 1 
HETATM 35 O O14 PGW . . . B 2 108.831 60.625 111.638 1 235.02 ? O14 PGW 901 A 1 
HETATM 36 C C15 PGW . . . B 2 113.544 75.369 108.764 1 173.89 ? C15 PGW 901 A 1 
HETATM 37 C C16 PGW . . . B 2 114.272 76.597 109.273 1 170.48 ? C16 PGW 901 A 1 
HETATM 38 C C17 PGW . . . B 2 115.726 76.383 109.628 1 166.29 ? C17 PGW 901 A 1 
HETATM 39 C C18 PGW . . . B 2 116.715 76.799 108.546 1 144.74 ? C18 PGW 901 A 1 
HETATM 40 C C19 PGW . . . B 2 113.816 65.385 109.239 1 158.97 ? C19 PGW 901 A 1 
HETATM 41 C C20 PGW . . . B 2 114.347 66.435 108.297 1 169.51 ? C20 PGW 901 A 1 
HETATM 42 C C21 PGW . . . B 2 113.752 67.805 108.525 1 178.91 ? C21 PGW 901 A 1 
HETATM 43 C C22 PGW . . . B 2 113.528 68.583 107.236 1 191.09 ? C22 PGW 901 A 1 
HETATM 44 C C23 PGW . . . B 2 112.842 69.929 107.407 1 187.9 ? C23 PGW 901 A 1 
HETATM 45 C C24 PGW . . . B 2 113.742 71.062 107.877 1 178.39 ? C24 PGW 901 A 1 
HETATM 46 C C25 PGW . . . B 2 113.568 72.358 107.112 1 181.4 ? C25 PGW 901 A 1 
HETATM 47 C C26 PGW . . . B 2 114.576 73.441 107.458 1 165.97 ? C26 PGW 901 A 1 
HETATM 48 C C27 PGW . . . B 2 114.011 74.843 107.422 1 160.53 ? C27 PGW 901 A 1 
HETATM 49 C C28 PGW . . . B 2 117.939 75.917 108.398 1 132.71 ? C28 PGW 901 A 1 
HETATM 50 C C29 PGW . . . B 2 119.766 77.048 109.683 1 125.88 ? C29 PGW 901 A 1 
HETATM 51 C C30 PGW . . . B 2 119.235 76.661 108.33 1 129.85 ? C30 PGW 901 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           219 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           51 
#