data_7F4T
#
_model_server_result.job_id            v0qS2oFA3eSA4eG77f5TvA 
_model_server_result.datetime_utc      '2025-10-01 16:12:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7f4t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":401}' 
#
_entry.id    7F4T 
#
_exptl.entry_id    7F4T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.642 
_cell.angle_gamma         90 
_cell.entry_id            7F4T 
_cell.length_a            98.13 
_cell.length_b            110.193 
_cell.length_c            102.636 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7F4T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I,O 1 1 
B,F,J,M,P 2 1 
C,G,K,Q 3 1 
D,H,L,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     ? 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 277 n n 
N HN1 SAM sing 278 n n 
N HN2 SAM sing 279 n n 
CA C SAM sing 280 n n 
CA CB SAM sing 281 n n 
CA HA SAM sing 282 n n 
C O SAM doub 283 n n 
C OXT SAM sing 284 n n 
CB CG SAM sing 285 n n 
CB HB1 SAM sing 286 n n 
CB HB2 SAM sing 287 n n 
CG SD SAM sing 288 n n 
CG HG1 SAM sing 289 n n 
CG HG2 SAM sing 290 n n 
SD CE SAM sing 291 n n 
SD C5' SAM sing 292 n n 
CE HE1 SAM sing 293 n n 
CE HE2 SAM sing 294 n n 
CE HE3 SAM sing 295 n n 
C5' C4' SAM sing 296 n n 
C5' "H5'1" SAM sing 297 n n 
C5' "H5'2" SAM sing 298 n n 
C4' O4' SAM sing 299 n n 
C4' C3' SAM sing 300 n n 
C4' H4' SAM sing 301 n n 
O4' C1' SAM sing 302 n n 
C3' O3' SAM sing 303 n n 
C3' C2' SAM sing 304 n n 
C3' H3' SAM sing 305 n n 
O3' HO3' SAM sing 306 n n 
C2' O2' SAM sing 307 n n 
C2' C1' SAM sing 308 n n 
C2' H2' SAM sing 309 n n 
O2' HO2' SAM sing 310 n n 
C1' N9 SAM sing 311 n n 
C1' H1' SAM sing 312 n n 
N9 C8 SAM sing 313 n y 
N9 C4 SAM sing 314 n y 
C8 N7 SAM doub 315 n y 
C8 H8 SAM sing 316 n n 
N7 C5 SAM sing 317 n y 
C5 C6 SAM sing 318 n y 
C5 C4 SAM doub 319 n y 
C6 N6 SAM sing 320 n n 
C6 N1 SAM doub 321 n y 
N6 HN61 SAM sing 322 n n 
N6 HN62 SAM sing 323 n n 
N1 C2 SAM sing 324 n y 
C2 N3 SAM doub 325 n y 
C2 H2 SAM sing 326 n n 
N3 C4 SAM sing 327 n y 
#
_atom_sites.entry_id                     7F4T 
_atom_sites.fract_transf_matrix[1][1]    0.010191 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000292 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009075 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009747 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 SAM A 1 401 1 SAM SAM ? 
J 3 SAM E 1 401 1 SAM SAM ? 
K 3 SAM H 1 401 1 SAM SAM ? 
L 3 SAM K 1 401 1 SAM SAM ? 
M 4 HOH E 1 501 8 HOH HOH ? 
N 4 HOH K 1 501 6 HOH HOH ? 
O 4 HOH B 1 201 10 HOH HOH ? 
O 4 HOH B 2 202 9 HOH HOH ? 
O 4 HOH B 3 203 7 HOH HOH ? 
P 4 HOH D 1 201 12 HOH HOH ? 
P 4 HOH D 2 202 1 HOH HOH ? 
P 4 HOH D 3 203 2 HOH HOH ? 
P 4 HOH D 4 204 13 HOH HOH ? 
P 4 HOH D 5 205 3 HOH HOH ? 
Q 4 HOH G 1 201 5 HOH HOH ? 
Q 4 HOH G 2 202 4 HOH HOH ? 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . K 3 -43.674 -28.933 16.931 1 41.65 ? N SAM 401 H 1 
HETATM 2 C CA SAM . . . K 3 -42.808 -27.794 16.978 1 39.76 ? CA SAM 401 H 1 
HETATM 3 C C SAM . . . K 3 -41.928 -27.907 15.803 1 34.35 ? C SAM 401 H 1 
HETATM 4 O O SAM . . . K 3 -40.915 -28.573 15.935 1 32.91 ? O SAM 401 H 1 
HETATM 5 O OXT SAM . . . K 3 -42.229 -27.37 14.74 1 33.9 ? OXT SAM 401 H 1 
HETATM 6 C CB SAM . . . K 3 -42.054 -27.908 18.293 1 39.9 ? CB SAM 401 H 1 
HETATM 7 C CG SAM . . . K 3 -43.011 -28.158 19.463 1 39.49 ? CG SAM 401 H 1 
HETATM 8 S SD SAM . . . K 3 -42.387 -27.437 20.819 1 44.38 ? SD SAM 401 H 1 
HETATM 9 C CE SAM . . . K 3 -42.533 -28.447 22.109 1 36.31 ? CE SAM 401 H 1 
HETATM 10 C C5' SAM . . . K 3 -43.166 -26.017 21.143 1 44.34 ? C5' SAM 401 H 1 
HETATM 11 C C4' SAM . . . K 3 -42.082 -24.971 21.261 1 42.98 ? C4' SAM 401 H 1 
HETATM 12 O O4' SAM . . . K 3 -42.485 -23.702 21.701 1 44.13 ? O4' SAM 401 H 1 
HETATM 13 C C3' SAM . . . K 3 -41.15 -25.28 22.369 1 41.73 ? C3' SAM 401 H 1 
HETATM 14 O O3' SAM . . . K 3 -40.626 -26.533 22.004 1 37.86 ? O3' SAM 401 H 1 
HETATM 15 C C2' SAM . . . K 3 -40.267 -24.079 22.284 1 40.07 ? C2' SAM 401 H 1 
HETATM 16 O O2' SAM . . . K 3 -39.553 -24.007 21.076 1 38.42 ? O2' SAM 401 H 1 
HETATM 17 C C1' SAM . . . K 3 -41.338 -23.032 22.179 1 44.04 ? C1' SAM 401 H 1 
HETATM 18 N N9 SAM . . . K 3 -41.713 -22.512 23.501 1 45.58 ? N9 SAM 401 H 1 
HETATM 19 C C8 SAM . . . K 3 -41.104 -22.759 24.664 1 39.87 ? C8 SAM 401 H 1 
HETATM 20 N N7 SAM . . . K 3 -41.697 -22.136 25.701 1 40.22 ? N7 SAM 401 H 1 
HETATM 21 C C5 SAM . . . K 3 -42.699 -21.452 25.198 1 44.91 ? C5 SAM 401 H 1 
HETATM 22 C C6 SAM . . . K 3 -43.693 -20.586 25.793 1 50.05 ? C6 SAM 401 H 1 
HETATM 23 N N6 SAM . . . K 3 -43.69 -20.343 27.107 1 50.85 ? N6 SAM 401 H 1 
HETATM 24 N N1 SAM . . . K 3 -44.587 -20.059 24.988 1 54.09 ? N1 SAM 401 H 1 
HETATM 25 C C2 SAM . . . K 3 -44.546 -20.34 23.686 1 55.22 ? C2 SAM 401 H 1 
HETATM 26 N N3 SAM . . . K 3 -43.659 -21.118 23.078 1 52.05 ? N3 SAM 401 H 1 
HETATM 27 C C4 SAM . . . K 3 -42.713 -21.706 23.773 1 47.04 ? C4 SAM 401 H 1 
#
_model_server_stats.io_time_ms              79 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           232 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           27 
#