data_7F4X
#
_model_server_result.job_id            uk7v0M9_wJHkFg-Pk-6E4A 
_model_server_result.datetime_utc      '2025-09-05 23:48:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7f4x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    7F4X 
#
loop_
_exptl.entry_id
_exptl.method
7F4X 'X-RAY DIFFRACTION' 
7F4X 'NEUTRON DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7F4X 
_cell.length_a            46.677 
_cell.length_b            64.618 
_cell.length_c            145.593 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7F4X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 8 A ASP 10 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc2 A O TYR 13 A TYR 15 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc3 B O2B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc4 B O2B ADP . A ADP 401 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc5 C MG MG . A MG 402 1_555 E O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc6 C MG MG . A MG 402 1_555 E O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc7 C MG MG . A MG 402 1_555 E O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc8 C MG MG . A MG 402 1_555 E O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc9 C MG MG . A MG 402 1_555 E O HOH . A HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc10 D NA NA . A NA 403 1_555 E O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? 
metalc ? metalc11 D NA NA . A NA 403 1_555 E O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7F4X 
_atom_sites.fract_transf_matrix[1][1]    0.021424 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015476 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006868 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 898 ADP ADP . 
C 3 MG A 1 402 900 MG MG . 
D 4 NA A 1 403 901 NA NA . 
E 5 HOH A 1 501 103 HOH HOH . 
E 5 HOH A 2 502 165 HOH HOH . 
E 5 HOH A 3 503 147 HOH HOH . 
E 5 HOH A 4 504 166 HOH HOH . 
E 5 HOH A 5 505 151 HOH HOH . 
E 5 HOH A 6 506 186 HOH HOH . 
E 5 HOH A 7 507 134 HOH HOH . 
E 5 HOH A 8 508 140 HOH HOH . 
E 5 HOH A 9 509 178 HOH HOH . 
E 5 HOH A 10 510 141 HOH HOH . 
E 5 HOH A 11 511 150 HOH HOH . 
E 5 HOH A 12 512 107 HOH HOH . 
E 5 HOH A 13 513 174 HOH HOH . 
E 5 HOH A 14 514 137 HOH HOH . 
E 5 HOH A 15 515 170 HOH HOH . 
E 5 HOH A 16 516 180 HOH HOH . 
E 5 HOH A 17 517 105 HOH HOH . 
E 5 HOH A 18 518 111 HOH HOH . 
E 5 HOH A 19 519 153 HOH HOH . 
E 5 HOH A 20 520 148 HOH HOH . 
E 5 HOH A 21 521 132 HOH HOH . 
E 5 HOH A 22 522 167 HOH HOH . 
E 5 HOH A 23 523 101 HOH HOH . 
E 5 HOH A 24 524 125 HOH HOH . 
E 5 HOH A 25 525 114 HOH HOH . 
E 5 HOH A 26 526 110 HOH HOH . 
E 5 HOH A 27 527 177 HOH HOH . 
E 5 HOH A 28 528 129 HOH HOH . 
E 5 HOH A 29 529 159 HOH HOH . 
E 5 HOH A 30 530 109 HOH HOH . 
E 5 HOH A 31 531 157 HOH HOH . 
E 5 HOH A 32 532 112 HOH HOH . 
E 5 HOH A 33 533 124 HOH HOH . 
E 5 HOH A 34 534 169 HOH HOH . 
E 5 HOH A 35 535 102 HOH HOH . 
E 5 HOH A 36 536 156 HOH HOH . 
E 5 HOH A 37 537 121 HOH HOH . 
E 5 HOH A 38 538 135 HOH HOH . 
E 5 HOH A 39 539 145 HOH HOH . 
E 5 HOH A 40 540 131 HOH HOH . 
E 5 HOH A 41 541 136 HOH HOH . 
E 5 HOH A 42 542 172 HOH HOH . 
E 5 HOH A 43 543 123 HOH HOH . 
E 5 HOH A 44 544 154 HOH HOH . 
E 5 HOH A 45 545 108 HOH HOH . 
E 5 HOH A 46 546 175 HOH HOH . 
E 5 HOH A 47 547 106 HOH HOH . 
E 5 HOH A 48 548 161 HOH HOH . 
E 5 HOH A 49 549 128 HOH HOH . 
E 5 HOH A 50 550 138 HOH HOH . 
E 5 HOH A 51 551 104 HOH HOH . 
E 5 HOH A 52 552 126 HOH HOH . 
E 5 HOH A 53 553 176 HOH HOH . 
E 5 HOH A 54 554 117 HOH HOH . 
E 5 HOH A 55 555 139 HOH HOH . 
E 5 HOH A 56 556 122 HOH HOH . 
E 5 HOH A 57 557 143 HOH HOH . 
E 5 HOH A 58 558 118 HOH HOH . 
E 5 HOH A 59 559 173 HOH HOH . 
E 5 HOH A 60 560 160 HOH HOH . 
E 5 HOH A 61 561 185 HOH HOH . 
E 5 HOH A 62 562 149 HOH HOH . 
E 5 HOH A 63 563 144 HOH HOH . 
E 5 HOH A 64 564 162 HOH HOH . 
E 5 HOH A 65 565 182 HOH HOH . 
E 5 HOH A 66 566 116 HOH HOH . 
E 5 HOH A 67 567 120 HOH HOH . 
E 5 HOH A 68 568 115 HOH HOH . 
E 5 HOH A 69 569 168 HOH HOH . 
E 5 HOH A 70 570 158 HOH HOH . 
E 5 HOH A 71 571 133 HOH HOH . 
E 5 HOH A 72 572 127 HOH HOH . 
E 5 HOH A 73 573 146 HOH HOH . 
E 5 HOH A 74 574 113 HOH HOH . 
E 5 HOH A 75 575 171 HOH HOH . 
E 5 HOH A 76 576 142 HOH HOH . 
E 5 HOH A 77 577 184 HOH HOH . 
E 5 HOH A 78 578 179 HOH HOH . 
E 5 HOH A 79 579 164 HOH HOH . 
E 5 HOH A 80 580 130 HOH HOH . 
E 5 HOH A 81 581 155 HOH HOH . 
E 5 HOH A 82 582 152 HOH HOH . 
E 5 HOH A 83 583 183 HOH HOH . 
E 5 HOH A 84 584 119 HOH HOH . 
E 5 HOH A 85 585 163 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -0.948 
_atom_site.Cartn_y               12.18 
_atom_site.Cartn_z               -17.831 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        19.86 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           403 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#