data_7F6J # _model_server_result.job_id NeNCzu3yRMIo6rInzBVEyA _model_server_result.datetime_utc '2024-11-21 23:46:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f6j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 7F6J # _exptl.entry_id 7F6J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7F6J _cell.length_a 84.226 _cell.length_b 84.226 _cell.length_c 154.622 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F6J _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 27 A THR 22 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc2 A OG1 THR 45 A THR 40 1_555 D MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc3 D MG MG . A MG 501 1_555 E O2B GTP . A GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc4 D MG MG . A MG 501 1_555 E O1G GTP . A GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc5 D MG MG . A MG 501 1_555 H O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc6 D MG MG . A MG 501 1_555 H O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc7 B OG1 THR 27 B THR 22 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc8 B OG1 THR 45 B THR 40 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc9 F MG MG . B MG 501 1_555 G O1G GTP . B GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc10 F MG MG . B MG 501 1_555 G O2B GTP . B GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? metalc ? metalc11 F MG MG . B MG 501 1_555 I O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc12 F MG MG . B MG 501 1_555 I O HOH . B HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 7F6J _atom_sites.fract_transf_matrix[1][1] 0.011873 _atom_sites.fract_transf_matrix[1][2] 0.006855 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MG A 1 501 501 MG MG . E 4 GTP A 1 502 502 GTP GTP . F 3 MG B 1 501 501 MG MG . G 4 GTP B 1 502 502 GTP GTP . H 5 HOH A 1 601 92 HOH HOH . H 5 HOH A 2 602 34 HOH HOH . H 5 HOH A 3 603 124 HOH HOH . H 5 HOH A 4 604 117 HOH HOH . H 5 HOH A 5 605 48 HOH HOH . H 5 HOH A 6 606 55 HOH HOH . H 5 HOH A 7 607 81 HOH HOH . H 5 HOH A 8 608 1 HOH HOH . H 5 HOH A 9 609 2 HOH HOH . H 5 HOH A 10 610 42 HOH HOH . H 5 HOH A 11 611 69 HOH HOH . H 5 HOH A 12 612 38 HOH HOH . H 5 HOH A 13 613 73 HOH HOH . H 5 HOH A 14 614 5 HOH HOH . H 5 HOH A 15 615 118 HOH HOH . H 5 HOH A 16 616 167 HOH HOH . H 5 HOH A 17 617 16 HOH HOH . H 5 HOH A 18 618 17 HOH HOH . H 5 HOH A 19 619 85 HOH HOH . H 5 HOH A 20 620 11 HOH HOH . H 5 HOH A 21 621 46 HOH HOH . H 5 HOH A 22 622 66 HOH HOH . H 5 HOH A 23 623 72 HOH HOH . H 5 HOH A 24 624 59 HOH HOH . H 5 HOH A 25 625 165 HOH HOH . H 5 HOH A 26 626 63 HOH HOH . H 5 HOH A 27 627 145 HOH HOH . H 5 HOH A 28 628 109 HOH HOH . H 5 HOH A 29 629 3 HOH HOH . H 5 HOH A 30 630 84 HOH HOH . H 5 HOH A 31 631 115 HOH HOH . H 5 HOH A 32 632 153 HOH HOH . H 5 HOH A 33 633 7 HOH HOH . H 5 HOH A 34 634 50 HOH HOH . H 5 HOH A 35 635 47 HOH HOH . H 5 HOH A 36 636 110 HOH HOH . H 5 HOH A 37 637 39 HOH HOH . H 5 HOH A 38 638 49 HOH HOH . H 5 HOH A 39 639 62 HOH HOH . H 5 HOH A 40 640 27 HOH HOH . H 5 HOH A 41 641 14 HOH HOH . H 5 HOH A 42 642 24 HOH HOH . H 5 HOH A 43 643 97 HOH HOH . H 5 HOH A 44 644 80 HOH HOH . H 5 HOH A 45 645 83 HOH HOH . H 5 HOH A 46 646 30 HOH HOH . H 5 HOH A 47 647 61 HOH HOH . H 5 HOH A 48 648 138 HOH HOH . H 5 HOH A 49 649 132 HOH HOH . H 5 HOH A 50 650 44 HOH HOH . H 5 HOH A 51 651 142 HOH HOH . H 5 HOH A 52 652 128 HOH HOH . H 5 HOH A 53 653 147 HOH HOH . H 5 HOH A 54 654 156 HOH HOH . H 5 HOH A 55 655 114 HOH HOH . H 5 HOH A 56 656 158 HOH HOH . H 5 HOH A 57 657 116 HOH HOH . H 5 HOH A 58 658 41 HOH HOH . H 5 HOH A 59 659 163 HOH HOH . H 5 HOH A 60 660 144 HOH HOH . H 5 HOH A 61 661 53 HOH HOH . H 5 HOH A 62 662 136 HOH HOH . H 5 HOH A 63 663 161 HOH HOH . I 5 HOH B 1 601 151 HOH HOH . I 5 HOH B 2 602 107 HOH HOH . I 5 HOH B 3 603 58 HOH HOH . I 5 HOH B 4 604 52 HOH HOH . I 5 HOH B 5 605 18 HOH HOH . I 5 HOH B 6 606 78 HOH HOH . I 5 HOH B 7 607 60 HOH HOH . I 5 HOH B 8 608 169 HOH HOH . I 5 HOH B 9 609 75 HOH HOH . I 5 HOH B 10 610 29 HOH HOH . I 5 HOH B 11 611 146 HOH HOH . I 5 HOH B 12 612 28 HOH HOH . I 5 HOH B 13 613 141 HOH HOH . I 5 HOH B 14 614 112 HOH HOH . I 5 HOH B 15 615 123 HOH HOH . I 5 HOH B 16 616 93 HOH HOH . I 5 HOH B 17 617 19 HOH HOH . I 5 HOH B 18 618 82 HOH HOH . I 5 HOH B 19 619 127 HOH HOH . I 5 HOH B 20 620 4 HOH HOH . I 5 HOH B 21 621 22 HOH HOH . I 5 HOH B 22 622 125 HOH HOH . I 5 HOH B 23 623 121 HOH HOH . I 5 HOH B 24 624 65 HOH HOH . I 5 HOH B 25 625 32 HOH HOH . I 5 HOH B 26 626 56 HOH HOH . I 5 HOH B 27 627 74 HOH HOH . I 5 HOH B 28 628 155 HOH HOH . I 5 HOH B 29 629 15 HOH HOH . I 5 HOH B 30 630 35 HOH HOH . I 5 HOH B 31 631 148 HOH HOH . I 5 HOH B 32 632 108 HOH HOH . I 5 HOH B 33 633 43 HOH HOH . I 5 HOH B 34 634 23 HOH HOH . I 5 HOH B 35 635 10 HOH HOH . I 5 HOH B 36 636 36 HOH HOH . I 5 HOH B 37 637 129 HOH HOH . I 5 HOH B 38 638 87 HOH HOH . I 5 HOH B 39 639 130 HOH HOH . I 5 HOH B 40 640 12 HOH HOH . I 5 HOH B 41 641 88 HOH HOH . I 5 HOH B 42 642 149 HOH HOH . I 5 HOH B 43 643 119 HOH HOH . I 5 HOH B 44 644 133 HOH HOH . I 5 HOH B 45 645 103 HOH HOH . I 5 HOH B 46 646 101 HOH HOH . I 5 HOH B 47 647 67 HOH HOH . I 5 HOH B 48 648 106 HOH HOH . I 5 HOH B 49 649 168 HOH HOH . I 5 HOH B 50 650 105 HOH HOH . I 5 HOH B 51 651 70 HOH HOH . I 5 HOH B 52 652 90 HOH HOH . I 5 HOH B 53 653 162 HOH HOH . I 5 HOH B 54 654 68 HOH HOH . I 5 HOH B 55 655 139 HOH HOH . I 5 HOH B 56 656 99 HOH HOH . I 5 HOH B 57 657 159 HOH HOH . J 5 HOH C 1 1201 54 HOH HOH . J 5 HOH C 2 1202 33 HOH HOH . J 5 HOH C 3 1203 64 HOH HOH . J 5 HOH C 4 1204 51 HOH HOH . J 5 HOH C 5 1205 9 HOH HOH . J 5 HOH C 6 1206 76 HOH HOH . J 5 HOH C 7 1207 26 HOH HOH . J 5 HOH C 8 1208 57 HOH HOH . J 5 HOH C 9 1209 160 HOH HOH . J 5 HOH C 10 1210 45 HOH HOH . J 5 HOH C 11 1211 95 HOH HOH . J 5 HOH C 12 1212 98 HOH HOH . J 5 HOH C 13 1213 77 HOH HOH . J 5 HOH C 14 1214 13 HOH HOH . J 5 HOH C 15 1215 94 HOH HOH . J 5 HOH C 16 1216 100 HOH HOH . J 5 HOH C 17 1217 21 HOH HOH . J 5 HOH C 18 1218 111 HOH HOH . J 5 HOH C 19 1219 96 HOH HOH . J 5 HOH C 20 1220 6 HOH HOH . J 5 HOH C 21 1221 25 HOH HOH . J 5 HOH C 22 1222 20 HOH HOH . J 5 HOH C 23 1223 40 HOH HOH . J 5 HOH C 24 1224 8 HOH HOH . J 5 HOH C 25 1225 131 HOH HOH . J 5 HOH C 26 1226 86 HOH HOH . J 5 HOH C 27 1227 102 HOH HOH . J 5 HOH C 28 1228 89 HOH HOH . J 5 HOH C 29 1229 164 HOH HOH . J 5 HOH C 30 1230 152 HOH HOH . J 5 HOH C 31 1231 31 HOH HOH . J 5 HOH C 32 1232 166 HOH HOH . J 5 HOH C 33 1233 122 HOH HOH . J 5 HOH C 34 1234 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . G 4 25.701 -14.513 -1.301 1 60.9 ? PG GTP 502 B 1 HETATM 2 O O1G GTP . . . G 4 26.928 -13.631 -1.137 1 52.38 ? O1G GTP 502 B 1 HETATM 3 O O2G GTP . . . G 4 25.888 -15.817 -0.554 1 61.69 ? O2G GTP 502 B 1 HETATM 4 O O3G GTP . . . G 4 25.364 -14.896 -2.734 1 63.27 ? O3G GTP 502 B 1 HETATM 5 O O3B GTP . . . G 4 24.518 -13.699 -0.65 1 38.87 ? O3B GTP 502 B 1 HETATM 6 P PB GTP . . . G 4 23.751 -12.421 -1.225 1 37.73 ? PB GTP 502 B 1 HETATM 7 O O1B GTP . . . G 4 22.874 -12.021 -0.055 1 34.67 ? O1B GTP 502 B 1 HETATM 8 O O2B GTP . . . G 4 24.714 -11.311 -1.57 1 36.8 ? O2B GTP 502 B 1 HETATM 9 O O3A GTP . . . G 4 22.782 -12.884 -2.399 1 35.02 ? O3A GTP 502 B 1 HETATM 10 P PA GTP . . . G 4 22.974 -12.54 -3.969 1 35.52 ? PA GTP 502 B 1 HETATM 11 O O1A GTP . . . G 4 22.623 -11.074 -4.178 1 37.28 ? O1A GTP 502 B 1 HETATM 12 O O2A GTP . . . G 4 24.373 -12.913 -4.408 1 37.14 ? O2A GTP 502 B 1 HETATM 13 O O5' GTP . . . G 4 21.804 -13.357 -4.659 1 40.78 ? O5' GTP 502 B 1 HETATM 14 C C5' GTP . . . G 4 21.437 -14.686 -4.323 1 41.29 ? C5' GTP 502 B 1 HETATM 15 C C4' GTP . . . G 4 20.533 -15.209 -5.433 1 38.94 ? C4' GTP 502 B 1 HETATM 16 O O4' GTP . . . G 4 19.252 -14.66 -5.243 1 31.67 ? O4' GTP 502 B 1 HETATM 17 C C3' GTP . . . G 4 20.948 -14.752 -6.82 1 48.52 ? C3' GTP 502 B 1 HETATM 18 O O3' GTP . . . G 4 20.567 -15.772 -7.714 1 56.45 ? O3' GTP 502 B 1 HETATM 19 C C2' GTP . . . G 4 20.041 -13.586 -7.134 1 42.97 ? C2' GTP 502 B 1 HETATM 20 O O2' GTP . . . G 4 19.811 -13.511 -8.519 1 50.16 ? O2' GTP 502 B 1 HETATM 21 C C1' GTP . . . G 4 18.778 -13.973 -6.395 1 39.95 ? C1' GTP 502 B 1 HETATM 22 N N9 GTP . . . G 4 17.976 -12.806 -5.989 1 39.08 ? N9 GTP 502 B 1 HETATM 23 C C8 GTP . . . G 4 18.426 -11.707 -5.285 1 35.66 ? C8 GTP 502 B 1 HETATM 24 N N7 GTP . . . G 4 17.366 -10.871 -5.09 1 38.06 ? N7 GTP 502 B 1 HETATM 25 C C5 GTP . . . G 4 16.257 -11.411 -5.641 1 37.33 ? C5 GTP 502 B 1 HETATM 26 C C6 GTP . . . G 4 14.938 -10.969 -5.719 1 42.57 ? C6 GTP 502 B 1 HETATM 27 O O6 GTP . . . G 4 14.666 -9.883 -5.191 1 43.9 ? O6 GTP 502 B 1 HETATM 28 N N1 GTP . . . G 4 13.952 -11.727 -6.362 1 44.3 ? N1 GTP 502 B 1 HETATM 29 C C2 GTP . . . G 4 14.406 -12.942 -6.9 1 44.72 ? C2 GTP 502 B 1 HETATM 30 N N2 GTP . . . G 4 13.589 -13.77 -7.544 1 50.68 ? N2 GTP 502 B 1 HETATM 31 N N3 GTP . . . G 4 15.712 -13.369 -6.831 1 43.53 ? N3 GTP 502 B 1 HETATM 32 C C4 GTP . . . G 4 16.637 -12.628 -6.2 1 39.25 ? C4 GTP 502 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #