data_7F6X # _model_server_result.job_id SMxvrPJXo4IpTxLnVUtqlQ _model_server_result.datetime_utc '2024-11-13 09:22:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f6x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 7F6X # _exptl.entry_id 7F6X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.051 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLYCOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7F6X _cell.length_a 66.909 _cell.length_b 66.909 _cell.length_c 117.036 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F6X _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 64 A HIS 64 1_555 D FE FE . A FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 D FE FE . A FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc3 A OE1 GLU 70 A GLU 70 1_555 D FE FE . A FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc4 A NE2 HIS 109 A HIS 109 1_555 D FE FE . A FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc5 D FE FE . A FE 202 1_555 G O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc6 B NE2 HIS 64 B HIS 64 1_555 F FE FE . B FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc7 B NE2 HIS 66 B HIS 66 1_555 F FE FE . B FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc8 B OE1 GLU 70 B GLU 70 1_555 F FE FE . B FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc9 B NE2 HIS 109 B HIS 109 1_555 F FE FE . B FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc10 E O GOA . B GOA 201 1_555 F FE FE . B FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc11 E O2 GOA . B GOA 201 1_555 F FE FE . B FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? # _chem_comp.formula 'C2 H4 O3' _chem_comp.formula_weight 76.051 _chem_comp.id GOA _chem_comp.mon_nstd_flag . _chem_comp.name 'GLYCOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HYDROXYACETIC ACID;HYDROXYETHANOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C CA GOA sing 113 n n C O GOA doub 114 n n C OXT GOA sing 115 n n CA O2 GOA sing 116 n n CA H22 GOA sing 117 n n CA H21 GOA sing 118 n n OXT HXT GOA sing 119 n n O2 H20 GOA sing 120 n n # _atom_sites.entry_id 7F6X _atom_sites.fract_transf_matrix[1][1] 0.014946 _atom_sites.fract_transf_matrix[1][2] 0.008629 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008544 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 I3A A 1 201 201 I3A DRG . D 3 FE A 1 202 1 FE FE . E 4 GOA B 1 201 201 GOA DR1 . F 3 FE B 1 202 2 FE FE . G 5 HOH A 1 301 8 HOH HOH . G 5 HOH A 2 302 24 HOH HOH . G 5 HOH A 3 303 31 HOH HOH . G 5 HOH A 4 304 26 HOH HOH . G 5 HOH A 5 305 42 HOH HOH . G 5 HOH A 6 306 27 HOH HOH . G 5 HOH A 7 307 81 HOH HOH . G 5 HOH A 8 308 19 HOH HOH . G 5 HOH A 9 309 48 HOH HOH . G 5 HOH A 10 310 46 HOH HOH . G 5 HOH A 11 311 32 HOH HOH . G 5 HOH A 12 312 72 HOH HOH . G 5 HOH A 13 313 38 HOH HOH . G 5 HOH A 14 314 85 HOH HOH . G 5 HOH A 15 315 74 HOH HOH . G 5 HOH A 16 316 25 HOH HOH . G 5 HOH A 17 317 14 HOH HOH . G 5 HOH A 18 318 58 HOH HOH . G 5 HOH A 19 319 11 HOH HOH . G 5 HOH A 20 320 20 HOH HOH . G 5 HOH A 21 321 50 HOH HOH . G 5 HOH A 22 322 52 HOH HOH . G 5 HOH A 23 323 45 HOH HOH . G 5 HOH A 24 324 9 HOH HOH . G 5 HOH A 25 325 40 HOH HOH . G 5 HOH A 26 326 22 HOH HOH . G 5 HOH A 27 327 21 HOH HOH . G 5 HOH A 28 328 44 HOH HOH . G 5 HOH A 29 329 69 HOH HOH . G 5 HOH A 30 330 28 HOH HOH . G 5 HOH A 31 331 79 HOH HOH . G 5 HOH A 32 332 57 HOH HOH . G 5 HOH A 33 333 53 HOH HOH . G 5 HOH A 34 334 33 HOH HOH . G 5 HOH A 35 335 56 HOH HOH . G 5 HOH A 36 336 2 HOH HOH . G 5 HOH A 37 337 6 HOH HOH . G 5 HOH A 38 338 78 HOH HOH . G 5 HOH A 39 339 62 HOH HOH . G 5 HOH A 40 340 63 HOH HOH . G 5 HOH A 41 341 66 HOH HOH . G 5 HOH A 42 342 35 HOH HOH . G 5 HOH A 43 343 55 HOH HOH . G 5 HOH A 44 344 82 HOH HOH . G 5 HOH A 45 345 80 HOH HOH . G 5 HOH A 46 346 15 HOH HOH . G 5 HOH A 47 347 64 HOH HOH . G 5 HOH A 48 348 4 HOH HOH . G 5 HOH A 49 349 90 HOH HOH . G 5 HOH A 50 350 88 HOH HOH . G 5 HOH A 51 351 12 HOH HOH . G 5 HOH A 52 352 51 HOH HOH . G 5 HOH A 53 353 60 HOH HOH . G 5 HOH A 54 354 76 HOH HOH . H 5 HOH B 1 301 65 HOH HOH . H 5 HOH B 2 302 75 HOH HOH . H 5 HOH B 3 303 86 HOH HOH . H 5 HOH B 4 304 92 HOH HOH . H 5 HOH B 5 305 54 HOH HOH . H 5 HOH B 6 306 43 HOH HOH . H 5 HOH B 7 307 37 HOH HOH . H 5 HOH B 8 308 83 HOH HOH . H 5 HOH B 9 309 39 HOH HOH . H 5 HOH B 10 310 41 HOH HOH . H 5 HOH B 11 311 3 HOH HOH . H 5 HOH B 12 312 13 HOH HOH . H 5 HOH B 13 313 5 HOH HOH . H 5 HOH B 14 314 18 HOH HOH . H 5 HOH B 15 315 61 HOH HOH . H 5 HOH B 16 316 91 HOH HOH . H 5 HOH B 17 317 7 HOH HOH . H 5 HOH B 18 318 49 HOH HOH . H 5 HOH B 19 319 36 HOH HOH . H 5 HOH B 20 320 73 HOH HOH . H 5 HOH B 21 321 16 HOH HOH . H 5 HOH B 22 322 71 HOH HOH . H 5 HOH B 23 323 17 HOH HOH . H 5 HOH B 24 324 47 HOH HOH . H 5 HOH B 25 325 30 HOH HOH . H 5 HOH B 26 326 89 HOH HOH . H 5 HOH B 27 327 34 HOH HOH . H 5 HOH B 28 328 68 HOH HOH . H 5 HOH B 29 329 10 HOH HOH . H 5 HOH B 30 330 59 HOH HOH . H 5 HOH B 31 331 84 HOH HOH . H 5 HOH B 32 332 29 HOH HOH . H 5 HOH B 33 333 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C GOA . . . E 4 -30.551 18.295 -3.824 1 43.79 ? C GOA 201 B 1 HETATM 2 C CA GOA . . . E 4 -29.112 18.009 -4.24 1 41.26 ? CA GOA 201 B 1 HETATM 3 O O GOA . . . E 4 -31 19.439 -4.06 1 40.31 ? O GOA 201 B 1 HETATM 4 O OXT GOA . . . E 4 -31.196 17.394 -3.244 1 44.02 -1 OXT GOA 201 B 1 HETATM 5 O O2 GOA . . . E 4 -28.432 19.252 -4.359 1 35.48 ? O2 GOA 201 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #