data_7F6Y # _model_server_result.job_id 7OetzCJVWeb3hOP4EFpbkg _model_server_result.datetime_utc '2024-11-21 10:26:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f6y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 7F6Y # _exptl.entry_id 7F6Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F6Y _cell.length_a 80.28 _cell.length_b 149.071 _cell.length_c 146.686 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F6Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 R CYS 336 1_555 A SG CYS 43 R CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 61 R CYS 379 1_555 A SG CYS 114 R CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 73 R CYS 391 1_555 A SG CYS 207 R CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 162 R CYS 480 1_555 A SG CYS 170 R CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 B SG CYS 144 H CYS 144 1_555 B SG CYS 200 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf8 C SG CYS 135 L CYS 135 1_555 C SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 25 R ASN 343 1_555 D C1 NAG . R NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7F6Y _atom_sites.fract_transf_matrix[1][1] 0.012456 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 601 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 -12.677 -0.634 -10.487 1 76.65 ? C1 NAG 601 R 1 HETATM 2 C C2 NAG . . . D 4 -12.83 -0.915 -11.981 1 77.03 ? C2 NAG 601 R 1 HETATM 3 C C3 NAG . . . D 4 -14.305 -0.806 -12.379 1 77.74 ? C3 NAG 601 R 1 HETATM 4 C C4 NAG . . . D 4 -15.142 -1.789 -11.561 1 78.37 ? C4 NAG 601 R 1 HETATM 5 C C5 NAG . . . D 4 -14.925 -1.608 -10.051 1 78.44 ? C5 NAG 601 R 1 HETATM 6 C C6 NAG . . . D 4 -15.562 -2.733 -9.244 1 79.14 ? C6 NAG 601 R 1 HETATM 7 C C7 NAG . . . D 4 -11.398 -0.411 -13.926 1 76.33 ? C7 NAG 601 R 1 HETATM 8 C C8 NAG . . . D 4 -10.538 0.625 -14.603 1 75.55 ? C8 NAG 601 R 1 HETATM 9 N N2 NAG . . . D 4 -11.992 -0.032 -12.784 1 76.59 ? N2 NAG 601 R 1 HETATM 10 O O3 NAG . . . D 4 -14.477 -1.082 -13.767 1 77.78 ? O3 NAG 601 R 1 HETATM 11 O O4 NAG . . . D 4 -16.528 -1.635 -11.861 1 79.06 ? O4 NAG 601 R 1 HETATM 12 O O5 NAG . . . D 4 -13.518 -1.581 -9.718 1 77.69 ? O5 NAG 601 R 1 HETATM 13 O O6 NAG . . . D 4 -15.189 -2.734 -7.87 1 79.31 ? O6 NAG 601 R 1 HETATM 14 O O7 NAG . . . D 4 -11.554 -1.536 -14.4 1 76.8 ? O7 NAG 601 R 1 HETATM 15 H H1 NAG . . . D 4 -12.967 0.28 -10.3 1 74 ? H1 NAG 601 R 1 HETATM 16 H H2 NAG . . . D 4 -12.547 -1.834 -12.143 1 74.56 ? H2 NAG 601 R 1 HETATM 17 H H3 NAG . . . D 4 -14.615 0.101 -12.196 1 74.98 ? H3 NAG 601 R 1 HETATM 18 H H4 NAG . . . D 4 -14.874 -2.696 -11.803 1 75.06 ? H4 NAG 601 R 1 HETATM 19 H H5 NAG . . . D 4 -15.327 -0.762 -9.777 1 75.03 ? H5 NAG 601 R 1 HETATM 20 H H61 NAG . . . D 4 -15.299 -3.587 -9.639 1 75.15 ? H61 NAG 601 R 1 HETATM 21 H H62 NAG . . . D 4 -16.532 -2.648 -9.303 1 75.15 ? H62 NAG 601 R 1 HETATM 22 H H81 NAG . . . D 4 -9.818 0.895 -14.001 1 74.03 ? H81 NAG 601 R 1 HETATM 23 H H82 NAG . . . D 4 -11.083 1.403 -14.828 1 74.03 ? H82 NAG 601 R 1 HETATM 24 H H83 NAG . . . D 4 -10.156 0.249 -15.419 1 74.03 ? H83 NAG 601 R 1 HETATM 25 H HN2 NAG . . . D 4 -11.832 0.81 -12.473 1 74.58 ? HN2 NAG 601 R 1 HETATM 26 H HO3 NAG . . . D 4 -15.097 -1.709 -13.87 1 75.04 ? HO3 NAG 601 R 1 HETATM 27 H HO4 NAG . . . D 4 -16.692 -0.789 -12.077 1 75.4 ? HO4 NAG 601 R 1 HETATM 28 H HO6 NAG . . . D 4 -15.376 -1.944 -7.512 1 75.18 ? HO6 NAG 601 R 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #