data_7F80 # _model_server_result.job_id QDnwihCCStlTOLDfJP7auQ _model_server_result.datetime_utc '2024-11-23 11:02:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f80 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 7F80 # _exptl.entry_id 7F80 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 460.489 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R)-3-methyl-6-[2-[[5-methyl-2-[4-(trifluoromethyl)phenyl]imidazol-1-yl]methyl]phenoxy]hexanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.89 _cell.angle_gamma 90 _cell.entry_id 7F80 _cell.length_a 39.687 _cell.length_b 74.991 _cell.length_c 96.341 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F80 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C25 H27 F3 N2 O3' _chem_comp.formula_weight 460.489 _chem_comp.id 1KF _chem_comp.mon_nstd_flag . _chem_comp.name '(3R)-3-methyl-6-[2-[[5-methyl-2-[4-(trifluoromethyl)phenyl]imidazol-1-yl]methyl]phenoxy]hexanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O33 C2 1KF doub 1 n n O1 C2 1KF sing 2 n n C2 C3 1KF sing 3 n n C32 C31 1KF sing 4 n n C3 C4 1KF sing 5 n n C8 C7 1KF sing 6 n n C8 O9 1KF sing 7 n n C12 C11 1KF doub 8 n y C12 C13 1KF sing 9 n y C11 C10 1KF sing 10 n y C6 C4 1KF sing 11 n n C6 C7 1KF sing 12 n n C4 C5 1KF sing 13 n n C13 C14 1KF doub 14 n y C10 O9 1KF sing 15 n n C10 C15 1KF doub 16 n y C31 C30 1KF doub 17 n y C31 N17 1KF sing 18 n y C14 C15 1KF sing 19 n y C15 C16 1KF sing 20 n n C30 N29 1KF sing 21 n y C16 N17 1KF sing 22 n n N17 C18 1KF sing 23 n y N29 C18 1KF doub 24 n y C18 C19 1KF sing 25 n n C19 C20 1KF doub 26 n y C19 C28 1KF sing 27 n y C20 C21 1KF sing 28 n y C28 C27 1KF doub 29 n y C21 C22 1KF doub 30 n y C27 C22 1KF sing 31 n y C22 C23 1KF sing 32 n n C23 F25 1KF sing 33 n n C23 F24 1KF sing 34 n n C23 F26 1KF sing 35 n n C4 H34 1KF sing 36 n n C5 H38 1KF sing 37 n n C5 H37 1KF sing 38 n n C5 H39 1KF sing 39 n n C6 H41 1KF sing 40 n n C6 H40 1KF sing 41 n n C7 H42 1KF sing 42 n n C7 H43 1KF sing 43 n n C8 H45 1KF sing 44 n n C8 H44 1KF sing 45 n n C13 H48 1KF sing 46 n n C20 H52 1KF sing 47 n n C21 H53 1KF sing 48 n n C28 H55 1KF sing 49 n n O1 H1 1KF sing 50 n n C3 H36 1KF sing 51 n n C3 H35 1KF sing 52 n n C14 H49 1KF sing 53 n n C12 H47 1KF sing 54 n n C11 H46 1KF sing 55 n n C16 H51 1KF sing 56 n n C16 H50 1KF sing 57 n n C32 H57 1KF sing 58 n n C32 H59 1KF sing 59 n n C32 H58 1KF sing 60 n n C30 H56 1KF sing 61 n n C27 H54 1KF sing 62 n n # _atom_sites.entry_id 7F80 _atom_sites.fract_transf_matrix[1][1] 0.025197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003493 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010479 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1KF A 1 900 900 1KF LIG . D 2 1KF B 1 900 900 1KF LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 1KF . . . D 2 24.528 25.246 -2.031 1 39.21 ? C4 1KF 900 B 1 HETATM 2 C C5 1KF . . . D 2 24.654 25.043 -3.528 1 41.44 ? C5 1KF 900 B 1 HETATM 3 C C6 1KF . . . D 2 25.297 26.487 -1.577 1 35.4 ? C6 1KF 900 B 1 HETATM 4 C C7 1KF . . . D 2 24.652 27.757 -2.108 1 32.3 ? C7 1KF 900 B 1 HETATM 5 C C8 1KF . . . D 2 24.933 28.954 -1.216 1 30.79 ? C8 1KF 900 B 1 HETATM 6 C C10 1KF . . . D 2 26.911 30.504 -1.168 1 31.24 ? C10 1KF 900 B 1 HETATM 7 C C13 1KF . . . D 2 28.211 32.934 -0.836 1 32.37 ? C13 1KF 900 B 1 HETATM 8 C C15 1KF . . . D 2 28.299 30.601 -1.272 1 32.4 ? C15 1KF 900 B 1 HETATM 9 C C20 1KF . . . D 2 30.35 29.702 -4.466 1 43.79 ? C20 1KF 900 B 1 HETATM 10 C C21 1KF . . . D 2 30.41 29.875 -5.843 1 49.28 ? C21 1KF 900 B 1 HETATM 11 C C22 1KF . . . D 2 31.624 29.882 -6.534 1 48.36 ? C22 1KF 900 B 1 HETATM 12 C C28 1KF . . . D 2 32.722 29.543 -4.408 1 43.52 ? C28 1KF 900 B 1 HETATM 13 O O33 1KF . . . D 2 23.751 24.796 0.482 1 53.61 ? O33 1KF 900 B 1 HETATM 14 C C2 1KF . . . D 2 24.637 23.978 0.111 1 46.76 ? C2 1KF 900 B 1 HETATM 15 O O1 1KF . . . D 2 25.217 23.186 0.895 1 46.88 ? O1 1KF 900 B 1 HETATM 16 C C3 1KF . . . D 2 25.019 23.971 -1.351 1 41.55 ? C3 1KF 900 B 1 HETATM 17 O O9 1KF . . . D 2 26.32 29.263 -1.365 1 30.52 ? O9 1KF 900 B 1 HETATM 18 C C14 1KF . . . D 2 28.965 31.803 -1.115 1 31.7 ? C14 1KF 900 B 1 HETATM 19 C C12 1KF . . . D 2 26.826 32.855 -0.71 1 30.9 ? C12 1KF 900 B 1 HETATM 20 C C11 1KF . . . D 2 26.166 31.65 -0.884 1 30.63 ? C11 1KF 900 B 1 HETATM 21 C C16 1KF . . . D 2 29.039 29.343 -1.589 1 35.77 ? C16 1KF 900 B 1 HETATM 22 N N17 1KF . . . D 2 30.492 29.302 -1.419 1 40.51 ? N17 1KF 900 B 1 HETATM 23 C C31 1KF . . . D 2 31.041 29.117 -0.213 1 43.36 ? C31 1KF 900 B 1 HETATM 24 C C32 1KF . . . D 2 30.435 28.969 1.165 1 43.4 ? C32 1KF 900 B 1 HETATM 25 C C30 1KF . . . D 2 32.415 29.064 -0.292 1 44.71 ? C30 1KF 900 B 1 HETATM 26 N N29 1KF . . . D 2 32.681 29.212 -1.615 1 46.98 ? N29 1KF 900 B 1 HETATM 27 C C18 1KF . . . D 2 31.515 29.347 -2.323 1 44.16 ? C18 1KF 900 B 1 HETATM 28 C C19 1KF . . . D 2 31.506 29.529 -3.724 1 43.42 ? C19 1KF 900 B 1 HETATM 29 C C27 1KF . . . D 2 32.789 29.715 -5.786 1 45.13 ? C27 1KF 900 B 1 HETATM 30 C C23 1KF . . . D 2 31.64 30.09 -8.043 1 45.64 ? C23 1KF 900 B 1 HETATM 31 F F26 1KF . . . D 2 30.803 29.245 -8.615 1 42.3 ? F26 1KF 900 B 1 HETATM 32 F F25 1KF . . . D 2 32.819 29.773 -8.552 1 47.96 ? F25 1KF 900 B 1 HETATM 33 F F24 1KF . . . D 2 31.331 31.376 -8.326 1 40.12 ? F24 1KF 900 B 1 HETATM 34 H H34 1KF . . . D 2 23.462 25.382 -1.804 1 39.31 ? H34 1KF 900 B 1 HETATM 35 H H38 1KF . . . D 2 25.642 24.747 -3.754 1 40.72 ? H38 1KF 900 B 1 HETATM 36 H H37 1KF . . . D 2 24.427 25.939 -4.042 1 40.72 ? H37 1KF 900 B 1 HETATM 37 H H39 1KF . . . D 2 23.985 24.281 -3.832 1 40.77 ? H39 1KF 900 B 1 HETATM 38 H H41 1KF . . . D 2 26.329 26.424 -1.923 1 35.5 ? H41 1KF 900 B 1 HETATM 39 H H40 1KF . . . D 2 25.326 26.533 -0.487 1 35.56 ? H40 1KF 900 B 1 HETATM 40 H H42 1KF . . . D 2 25.023 27.968 -3.113 1 32.69 ? H42 1KF 900 B 1 HETATM 41 H H43 1KF . . . D 2 23.573 27.61 -2.179 1 32.7 ? H43 1KF 900 B 1 HETATM 42 H H45 1KF . . . D 2 24.703 28.722 -0.175 1 31.09 ? H45 1KF 900 B 1 HETATM 43 H H44 1KF . . . D 2 24.317 29.794 -1.531 1 31.08 ? H44 1KF 900 B 1 HETATM 44 H H48 1KF . . . D 2 28.708 33.886 -0.693 1 31.83 ? H48 1KF 900 B 1 HETATM 45 H H52 1KF . . . D 2 29.385 29.677 -3.995 1 44.77 ? H52 1KF 900 B 1 HETATM 46 H H53 1KF . . . D 2 29.489 29.976 -6.403 1 47.58 ? H53 1KF 900 B 1 HETATM 47 H H55 1KF . . . D 2 33.649 29.444 -3.858 1 43.92 ? H55 1KF 900 B 1 HETATM 48 H H36 1KF . . . D 2 24.57 23.102 -1.838 1 42.14 ? H36 1KF 900 B 1 HETATM 49 H H35 1KF . . . D 2 26.099 23.892 -1.46 1 42.15 ? H35 1KF 900 B 1 HETATM 50 H H49 1KF . . . D 2 30.043 31.866 -1.2 1 32.07 ? H49 1KF 900 B 1 HETATM 51 H H47 1KF . . . D 2 26.261 33.751 -0.496 1 31.21 ? H47 1KF 900 B 1 HETATM 52 H H46 1KF . . . D 2 25.089 31.615 -0.794 1 30.86 ? H46 1KF 900 B 1 HETATM 53 H H51 1KF . . . D 2 28.764 29.009 -2.585 1 36.05 ? H51 1KF 900 B 1 HETATM 54 H H50 1KF . . . D 2 28.642 28.574 -0.923 1 36.01 ? H50 1KF 900 B 1 HETATM 55 H H57 1KF . . . D 2 31.181 29.114 1.902 1 43.3 ? H57 1KF 900 B 1 HETATM 56 H H59 1KF . . . D 2 30.025 27.998 1.266 1 43.35 ? H59 1KF 900 B 1 HETATM 57 H H58 1KF . . . D 2 29.669 29.689 1.292 1 43.29 ? H58 1KF 900 B 1 HETATM 58 H H56 1KF . . . D 2 33.121 28.913 0.515 1 44.87 ? H56 1KF 900 B 1 HETATM 59 H H54 1KF . . . D 2 33.752 29.743 -6.275 1 45.32 ? H54 1KF 900 B 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 59 #