data_7F83 # _model_server_result.job_id 08cYQXF5GJR_9lIz-g63Iw _model_server_result.datetime_utc '2024-11-04 22:56:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f83 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1202}' # _entry.id 7F83 # _exptl.entry_id 7F83 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.6 _cell.angle_gamma 90 _cell.entry_id 7F83 _cell.length_a 84.71 _cell.length_b 58.68 _cell.length_c 119.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 82 A CYS 116 1_555 A SG CYS 164 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? disulf ? disulf2 B SG CYS 82 B CYS 116 1_555 B SG CYS 164 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 310 n n C10 C9 OLC doub 311 n n C10 C11 OLC sing 312 n n C9 C8 OLC sing 313 n n C17 C16 OLC sing 314 z n C11 C12 OLC sing 315 n n C8 C7 OLC sing 316 n n C24 C22 OLC sing 317 n n C24 O25 OLC sing 318 n n C16 C15 OLC sing 319 n n C12 C13 OLC sing 320 n n C7 C6 OLC sing 321 n n C15 C14 OLC sing 322 n n C13 C14 OLC sing 323 n n C6 C5 OLC sing 324 n n C5 C4 OLC sing 325 n n C4 C3 OLC sing 326 n n C3 C2 OLC sing 327 n n C2 C1 OLC sing 328 n n C21 C22 OLC sing 329 n n C21 O20 OLC sing 330 n n C1 O19 OLC doub 331 n n C1 O20 OLC sing 332 n n C22 O23 OLC sing 333 n n C18 H18 OLC sing 334 n n C18 H18A OLC sing 335 n n C18 H18B OLC sing 336 n n C10 H10 OLC sing 337 n n C9 H9 OLC sing 338 n n C17 H17 OLC sing 339 n n C17 H17A OLC sing 340 n n C11 H11 OLC sing 341 n n C11 H11A OLC sing 342 n n C8 H8 OLC sing 343 n n C8 H8A OLC sing 344 n n C24 H24 OLC sing 345 n n C24 H24A OLC sing 346 n n C16 H16 OLC sing 347 n n C16 H16A OLC sing 348 n n C12 H12 OLC sing 349 n n C12 H12A OLC sing 350 n n C7 H7 OLC sing 351 n n C7 H7A OLC sing 352 n n C15 H15 OLC sing 353 n n C15 H15A OLC sing 354 n n C13 H13 OLC sing 355 n n C13 H13A OLC sing 356 n n C6 H6 OLC sing 357 n n C6 H6A OLC sing 358 n n C14 H14 OLC sing 359 n n C14 H14A OLC sing 360 n n C5 H5 OLC sing 361 n n C5 H5A OLC sing 362 n n C4 H4 OLC sing 363 n n C4 H4A OLC sing 364 n n C3 H3 OLC sing 365 n n C3 H3A OLC sing 366 n n C2 H2 OLC sing 367 n n C2 H2A OLC sing 368 n n C21 H21 OLC sing 369 n n C21 H21A OLC sing 370 n n C22 H22 OLC sing 371 n n O25 HO25 OLC sing 372 n n O23 HO23 OLC sing 373 n n # _atom_sites.entry_id 7F83 _atom_sites.fract_transf_matrix[1][1] 0.011805 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000123 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OLC A 1 1201 1201 OLC OLC . D 2 OLC A 1 1202 1202 OLC OLC . E 3 1KQ A 1 1203 1203 1KQ 1KQ . F 2 OLC B 1 1201 1201 OLC OLC . G 2 OLC B 1 1202 1202 OLC OLC . H 2 OLC B 1 1203 1203 OLC OLC . I 2 OLC B 1 1204 1204 OLC OLC . J 3 1KQ B 1 1205 1205 1KQ 1KQ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . D 2 -8.058 -7.027 -3.053 1 34.37 ? C18 OLC 1202 A 1 HETATM 2 C C10 OLC . . . D 2 0.018 -11.91 0.365 1 61.35 ? C10 OLC 1202 A 1 HETATM 3 C C9 OLC . . . D 2 1.271 -11.886 0.79 1 66.15 ? C9 OLC 1202 A 1 HETATM 4 C C17 OLC . . . D 2 -7.533 -8.228 -2.253 1 42.59 ? C17 OLC 1202 A 1 HETATM 5 C C11 OLC . . . D 2 -0.891 -10.685 0.527 1 52.63 ? C11 OLC 1202 A 1 HETATM 6 C C8 OLC . . . D 2 2.192 -13.104 0.638 1 67.93 ? C8 OLC 1202 A 1 HETATM 7 C C24 OLC . . . D 2 13.702 -12.242 4.945 1 76.63 ? C24 OLC 1202 A 1 HETATM 8 C C16 OLC . . . D 2 -6.014 -8.364 -2.434 1 44.9 ? C16 OLC 1202 A 1 HETATM 9 C C12 OLC . . . D 2 -1.87 -10.58 -0.649 1 53.09 ? C12 OLC 1202 A 1 HETATM 10 C C7 OLC . . . D 2 3.358 -12.813 -0.315 1 56.9 ? C7 OLC 1202 A 1 HETATM 11 C C15 OLC . . . D 2 -5.364 -9.06 -1.233 1 46.47 ? C15 OLC 1202 A 1 HETATM 12 C C13 OLC . . . D 2 -3.193 -9.911 -0.247 1 50.76 ? C13 OLC 1202 A 1 HETATM 13 C C6 OLC . . . D 2 4.672 -13.305 0.295 1 54.73 ? C6 OLC 1202 A 1 HETATM 14 C C14 OLC . . . D 2 -3.866 -9.276 -1.474 1 45.25 ? C14 OLC 1202 A 1 HETATM 15 C C5 OLC . . . D 2 5.709 -12.17 0.309 1 65.63 ? C5 OLC 1202 A 1 HETATM 16 C C4 OLC . . . D 2 6.894 -12.535 1.218 1 68.71 ? C4 OLC 1202 A 1 HETATM 17 C C3 OLC . . . D 2 8.006 -11.472 1.212 1 54.87 ? C3 OLC 1202 A 1 HETATM 18 C C2 OLC . . . D 2 8.86 -11.615 2.481 1 59.2 ? C2 OLC 1202 A 1 HETATM 19 C C21 OLC . . . D 2 11.461 -11.364 4.234 1 66.73 ? C21 OLC 1202 A 1 HETATM 20 C C1 OLC . . . D 2 10.052 -10.647 2.461 1 68.7 ? C1 OLC 1202 A 1 HETATM 21 C C22 OLC . . . D 2 12.915 -10.987 4.543 1 72.05 ? C22 OLC 1202 A 1 HETATM 22 O O19 OLC . . . D 2 10.39 -10.169 1.431 1 70.48 ? O19 OLC 1202 A 1 HETATM 23 O O25 OLC . . . D 2 15.058 -12.121 4.597 1 60.6 ? O25 OLC 1202 A 1 HETATM 24 O O23 OLC . . . D 2 13.514 -10.416 3.412 1 76.31 ? O23 OLC 1202 A 1 HETATM 25 O O20 OLC . . . D 2 10.759 -10.308 3.633 1 62.83 ? O20 OLC 1202 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #