data_7F83 # _model_server_result.job_id fQ5YFovajC-lfasgMDgerg _model_server_result.datetime_utc '2024-11-04 22:54:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f83 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1203}' # _entry.id 7F83 # _exptl.entry_id 7F83 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 512.669 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(2-methylimidazo[2,1-b][1,3]thiazol-6-yl)-1-[2-[(1R)-5-(6-methylpyrimidin-4-yl)-2,3-dihydro-1H-inden-1-yl]-2,7-diazaspiro[3.5]nonan-7-yl]ethanone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.6 _cell.angle_gamma 90 _cell.entry_id 7F83 _cell.length_a 84.71 _cell.length_b 58.68 _cell.length_c 119.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 82 A CYS 116 1_555 A SG CYS 164 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? disulf ? disulf2 B SG CYS 82 B CYS 116 1_555 B SG CYS 164 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C29 H32 N6 O S' _chem_comp.formula_weight 512.669 _chem_comp.id 1KQ _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2-methylimidazo[2,1-b][1,3]thiazol-6-yl)-1-[2-[(1R)-5-(6-methylpyrimidin-4-yl)-2,3-dihydro-1H-inden-1-yl]-2,7-diazaspiro[3.5]nonan-7-yl]ethanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C12 1KQ doub 1 n y C11 C10 1KQ sing 2 n y C11 C16 1KQ sing 3 n n C12 C13 1KQ sing 4 n y C12 C14 1KQ sing 5 n n C13 C08 1KQ doub 6 n y C14 C15 1KQ sing 7 n n C01 C02 1KQ sing 8 n n C02 C07 1KQ doub 9 n y C02 N03 1KQ sing 10 n y C04 N03 1KQ doub 11 n y C04 N05 1KQ sing 12 n y C06 C07 1KQ sing 13 n y C06 C08 1KQ sing 14 n n C06 N05 1KQ doub 15 n y C08 C09 1KQ sing 16 n y C09 C10 1KQ doub 17 n y C15 C16 1KQ sing 18 n n C16 N17 1KQ sing 19 n n C18 C19 1KQ sing 20 n n C18 N17 1KQ sing 21 n n C19 C20 1KQ sing 22 n n C19 C21 1KQ sing 23 n n C19 C25 1KQ sing 24 n n C20 N17 1KQ sing 25 n n C21 C22 1KQ sing 26 n n C22 N23 1KQ sing 27 n n C24 C25 1KQ sing 28 n n C24 N23 1KQ sing 29 n n C26 C28 1KQ sing 30 n n C26 N23 1KQ sing 31 n n C26 O27 1KQ doub 32 n n C28 C29 1KQ sing 33 n n C29 C33 1KQ doub 34 n y C29 N30 1KQ sing 35 n y C31 N30 1KQ doub 36 n y C31 N32 1KQ sing 37 n y C31 S36 1KQ sing 38 n y C33 N32 1KQ sing 39 n y C34 C35 1KQ doub 40 n y C34 N32 1KQ sing 41 n y C35 C37 1KQ sing 42 n n C35 S36 1KQ sing 43 n y C13 H1 1KQ sing 44 n n C14 H2 1KQ sing 45 n n C14 H3 1KQ sing 46 n n C01 H4 1KQ sing 47 n n C01 H5 1KQ sing 48 n n C01 H6 1KQ sing 49 n n C04 H7 1KQ sing 50 n n C07 H8 1KQ sing 51 n n C09 H9 1KQ sing 52 n n C10 H10 1KQ sing 53 n n C15 H11 1KQ sing 54 n n C15 H12 1KQ sing 55 n n C16 H13 1KQ sing 56 n n C18 H14 1KQ sing 57 n n C18 H15 1KQ sing 58 n n C20 H16 1KQ sing 59 n n C20 H17 1KQ sing 60 n n C21 H18 1KQ sing 61 n n C21 H19 1KQ sing 62 n n C22 H20 1KQ sing 63 n n C22 H21 1KQ sing 64 n n C24 H22 1KQ sing 65 n n C24 H23 1KQ sing 66 n n C25 H24 1KQ sing 67 n n C25 H25 1KQ sing 68 n n C28 H26 1KQ sing 69 n n C28 H27 1KQ sing 70 n n C33 H28 1KQ sing 71 n n C34 H29 1KQ sing 72 n n C37 H30 1KQ sing 73 n n C37 H31 1KQ sing 74 n n C37 H32 1KQ sing 75 n n # _atom_sites.entry_id 7F83 _atom_sites.fract_transf_matrix[1][1] 0.011805 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000123 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OLC A 1 1201 1201 OLC OLC . D 2 OLC A 1 1202 1202 OLC OLC . E 3 1KQ A 1 1203 1203 1KQ 1KQ . F 2 OLC B 1 1201 1201 OLC OLC . G 2 OLC B 1 1202 1202 OLC OLC . H 2 OLC B 1 1203 1203 OLC OLC . I 2 OLC B 1 1204 1204 OLC OLC . J 3 1KQ B 1 1205 1205 1KQ 1KQ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 1KQ . . . E 3 -8.447 7.627 17.452 1 39.96 ? C11 1KQ 1203 A 1 HETATM 2 C C12 1KQ . . . E 3 -8.146 7.932 18.781 1 38.13 ? C12 1KQ 1203 A 1 HETATM 3 C C13 1KQ . . . E 3 -9.147 8.465 19.622 1 40.63 ? C13 1KQ 1203 A 1 HETATM 4 C C14 1KQ . . . E 3 -6.662 7.599 19.038 1 34.77 ? C14 1KQ 1203 A 1 HETATM 5 C C01 1KQ . . . E 3 -12.679 9.176 23.495 1 44.13 ? C01 1KQ 1203 A 1 HETATM 6 C C02 1KQ . . . E 3 -12.617 9.371 21.978 1 41.06 ? C02 1KQ 1203 A 1 HETATM 7 C C04 1KQ . . . E 3 -13.569 10.144 20.03 1 45.6 ? C04 1KQ 1203 A 1 HETATM 8 C C06 1KQ . . . E 3 -11.507 9.149 19.879 1 47.7 ? C06 1KQ 1203 A 1 HETATM 9 C C07 1KQ . . . E 3 -11.519 8.918 21.251 1 47.34 ? C07 1KQ 1203 A 1 HETATM 10 C C08 1KQ . . . E 3 -10.442 8.674 19.105 1 48.39 ? C08 1KQ 1203 A 1 HETATM 11 C C09 1KQ . . . E 3 -10.732 8.335 17.776 1 43.07 ? C09 1KQ 1203 A 1 HETATM 12 C C10 1KQ . . . E 3 -9.745 7.822 16.955 1 35.57 ? C10 1KQ 1203 A 1 HETATM 13 C C15 1KQ . . . E 3 -6.069 7.235 17.685 1 38.59 ? C15 1KQ 1203 A 1 HETATM 14 C C16 1KQ . . . E 3 -7.234 7.019 16.725 1 52.54 ? C16 1KQ 1203 A 1 HETATM 15 C C18 1KQ . . . E 3 -6.077 5.428 15.777 1 50.06 ? C18 1KQ 1203 A 1 HETATM 16 C C19 1KQ . . . E 3 -6.987 4.503 15.175 1 45.7 ? C19 1KQ 1203 A 1 HETATM 17 C C20 1KQ . . . E 3 -8.031 5.376 15.611 1 44.83 ? C20 1KQ 1203 A 1 HETATM 18 C C21 1KQ . . . E 3 -7.506 3.185 15.603 1 41.65 ? C21 1KQ 1203 A 1 HETATM 19 C C22 1KQ . . . E 3 -6.699 2.002 15.055 1 27.6 ? C22 1KQ 1203 A 1 HETATM 20 C C24 1KQ . . . E 3 -6.078 3.461 13.138 1 35.13 ? C24 1KQ 1203 A 1 HETATM 21 C C25 1KQ . . . E 3 -7.013 4.535 13.696 1 47.43 ? C25 1KQ 1203 A 1 HETATM 22 C C26 1KQ . . . E 3 -6.5 0.918 12.646 1 42.15 ? C26 1KQ 1203 A 1 HETATM 23 C C28 1KQ . . . E 3 -6.203 1.118 11.137 1 28.99 ? C28 1KQ 1203 A 1 HETATM 24 C C29 1KQ . . . E 3 -4.702 0.915 10.879 1 33.39 ? C29 1KQ 1203 A 1 HETATM 25 C C31 1KQ . . . E 3 -2.756 -0.008 10.732 1 38.47 ? C31 1KQ 1203 A 1 HETATM 26 C C33 1KQ . . . E 3 -3.771 1.86 10.456 1 45.13 ? C33 1KQ 1203 A 1 HETATM 27 C C34 1KQ . . . E 3 -1.292 1.613 10.029 1 22.13 ? C34 1KQ 1203 A 1 HETATM 28 C C35 1KQ . . . E 3 -0.366 0.592 10.118 1 26.86 ? C35 1KQ 1203 A 1 HETATM 29 C C37 1KQ . . . E 3 1.117 0.562 9.831 1 33.19 ? C37 1KQ 1203 A 1 HETATM 30 N N03 1KQ . . . E 3 -13.604 9.971 21.341 1 42.09 ? N03 1KQ 1203 A 1 HETATM 31 N N05 1KQ . . . E 3 -12.548 9.726 19.298 1 45.22 ? N05 1KQ 1203 A 1 HETATM 32 N N17 1KQ . . . E 3 -7.136 5.915 16.601 1 54.27 ? N17 1KQ 1203 A 1 HETATM 33 N N23 1KQ . . . E 3 -6.438 2.069 13.573 1 35.3 ? N23 1KQ 1203 A 1 HETATM 34 N N30 1KQ . . . E 3 -4.044 -0.222 11.045 1 34.76 ? N30 1KQ 1203 A 1 HETATM 35 N N32 1KQ . . . E 3 -2.56 1.241 10.371 1 42.37 ? N32 1KQ 1203 A 1 HETATM 36 O O27 1KQ . . . E 3 -6.784 -0.171 13.028 1 39.67 ? O27 1KQ 1203 A 1 HETATM 37 S S36 1KQ . . . E 3 -1.217 -0.809 10.638 1 58.66 ? S36 1KQ 1203 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #