data_7F87 # _model_server_result.job_id 3JfqQJr3CqjN92QWG6gjeQ _model_server_result.datetime_utc '2025-01-16 09:56:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":302}' # _entry.id 7F87 # _exptl.entry_id 7F87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.22 _cell.angle_gamma 90 _cell.entry_id 7F87 _cell.length_a 34.608 _cell.length_b 55.674 _cell.length_c 75.312 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,K,M 1 1 B,D,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 116 A THR 200 1_555 A N CSD 117 A CSD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C CSD 117 A CSD 201 1_555 A N ALA 118 A ALA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 B C THR 116 B THR 200 1_555 B N CSD 117 B CSD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale4 B C CSD 117 B CSD 201 1_555 B N ALA 118 B ALA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 271 n n P O2 PO4 sing 272 n n P O3 PO4 sing 273 n n P O4 PO4 sing 274 n n # _atom_sites.entry_id 7F87 _atom_sites.fract_transf_matrix[1][1] 0.028895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006786 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013639 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PO4 A 1 301 1 PO4 PO4 . F 3 PO4 A 1 302 4 PO4 PO4 . G 3 PO4 A 1 303 5 PO4 PO4 . H 3 PO4 B 1 301 2 PO4 PO4 . I 3 PO4 B 1 302 3 PO4 PO4 . J 4 EDO B 1 303 401 EDO EDO . K 5 HOH A 1 401 202 HOH HOH . K 5 HOH A 2 402 31 HOH HOH . K 5 HOH A 3 403 223 HOH HOH . K 5 HOH A 4 404 39 HOH HOH . K 5 HOH A 5 405 79 HOH HOH . K 5 HOH A 6 406 233 HOH HOH . K 5 HOH A 7 407 21 HOH HOH . K 5 HOH A 8 408 220 HOH HOH . K 5 HOH A 9 409 198 HOH HOH . K 5 HOH A 10 410 80 HOH HOH . K 5 HOH A 11 411 23 HOH HOH . K 5 HOH A 12 412 221 HOH HOH . K 5 HOH A 13 413 20 HOH HOH . K 5 HOH A 14 414 19 HOH HOH . K 5 HOH A 15 415 224 HOH HOH . K 5 HOH A 16 416 44 HOH HOH . K 5 HOH A 17 417 219 HOH HOH . K 5 HOH A 18 418 28 HOH HOH . K 5 HOH A 19 419 191 HOH HOH . K 5 HOH A 20 420 15 HOH HOH . K 5 HOH A 21 421 236 HOH HOH . K 5 HOH A 22 422 195 HOH HOH . K 5 HOH A 23 423 247 HOH HOH . K 5 HOH A 24 424 232 HOH HOH . K 5 HOH A 25 425 10 HOH HOH . K 5 HOH A 26 426 248 HOH HOH . K 5 HOH A 27 427 231 HOH HOH . K 5 HOH A 28 428 159 HOH HOH . K 5 HOH A 29 429 56 HOH HOH . K 5 HOH A 30 430 115 HOH HOH . K 5 HOH A 31 431 160 HOH HOH . K 5 HOH A 32 432 106 HOH HOH . K 5 HOH A 33 433 209 HOH HOH . K 5 HOH A 34 434 194 HOH HOH . K 5 HOH A 35 435 22 HOH HOH . K 5 HOH A 36 436 9 HOH HOH . K 5 HOH A 37 437 200 HOH HOH . K 5 HOH A 38 438 81 HOH HOH . K 5 HOH A 39 439 57 HOH HOH . K 5 HOH A 40 440 226 HOH HOH . K 5 HOH A 41 441 89 HOH HOH . K 5 HOH A 42 442 62 HOH HOH . K 5 HOH A 43 443 78 HOH HOH . K 5 HOH A 44 444 225 HOH HOH . K 5 HOH A 45 445 17 HOH HOH . K 5 HOH A 46 446 54 HOH HOH . K 5 HOH A 47 447 117 HOH HOH . K 5 HOH A 48 448 52 HOH HOH . K 5 HOH A 49 449 69 HOH HOH . K 5 HOH A 50 450 193 HOH HOH . K 5 HOH A 51 451 205 HOH HOH . K 5 HOH A 52 452 105 HOH HOH . K 5 HOH A 53 453 61 HOH HOH . K 5 HOH A 54 454 227 HOH HOH . K 5 HOH A 55 455 208 HOH HOH . K 5 HOH A 56 456 229 HOH HOH . K 5 HOH A 57 457 6 HOH HOH . K 5 HOH A 58 458 11 HOH HOH . K 5 HOH A 59 459 130 HOH HOH . K 5 HOH A 60 460 24 HOH HOH . K 5 HOH A 61 461 201 HOH HOH . K 5 HOH A 62 462 121 HOH HOH . K 5 HOH A 63 463 171 HOH HOH . K 5 HOH A 64 464 83 HOH HOH . K 5 HOH A 65 465 228 HOH HOH . K 5 HOH A 66 466 16 HOH HOH . K 5 HOH A 67 467 98 HOH HOH . K 5 HOH A 68 468 215 HOH HOH . K 5 HOH A 69 469 84 HOH HOH . K 5 HOH A 70 470 182 HOH HOH . K 5 HOH A 71 471 82 HOH HOH . K 5 HOH A 72 472 197 HOH HOH . K 5 HOH A 73 473 112 HOH HOH . K 5 HOH A 74 474 212 HOH HOH . K 5 HOH A 75 475 173 HOH HOH . K 5 HOH A 76 476 154 HOH HOH . K 5 HOH A 77 477 138 HOH HOH . L 5 HOH B 1 401 66 HOH HOH . L 5 HOH B 2 402 128 HOH HOH . L 5 HOH B 3 403 42 HOH HOH . L 5 HOH B 4 404 41 HOH HOH . L 5 HOH B 5 405 59 HOH HOH . L 5 HOH B 6 406 235 HOH HOH . L 5 HOH B 7 407 7 HOH HOH . L 5 HOH B 8 408 189 HOH HOH . L 5 HOH B 9 409 113 HOH HOH . L 5 HOH B 10 410 206 HOH HOH . L 5 HOH B 11 411 26 HOH HOH . L 5 HOH B 12 412 77 HOH HOH . L 5 HOH B 13 413 13 HOH HOH . L 5 HOH B 14 414 101 HOH HOH . L 5 HOH B 15 415 35 HOH HOH . L 5 HOH B 16 416 55 HOH HOH . L 5 HOH B 17 417 12 HOH HOH . L 5 HOH B 18 418 238 HOH HOH . L 5 HOH B 19 419 27 HOH HOH . L 5 HOH B 20 420 87 HOH HOH . L 5 HOH B 21 421 33 HOH HOH . L 5 HOH B 22 422 141 HOH HOH . L 5 HOH B 23 423 70 HOH HOH . L 5 HOH B 24 424 76 HOH HOH . L 5 HOH B 25 425 158 HOH HOH . L 5 HOH B 26 426 45 HOH HOH . L 5 HOH B 27 427 48 HOH HOH . L 5 HOH B 28 428 5 HOH HOH . L 5 HOH B 29 429 211 HOH HOH . L 5 HOH B 30 430 47 HOH HOH . L 5 HOH B 31 431 64 HOH HOH . L 5 HOH B 32 432 75 HOH HOH . L 5 HOH B 33 433 192 HOH HOH . L 5 HOH B 34 434 63 HOH HOH . L 5 HOH B 35 435 147 HOH HOH . L 5 HOH B 36 436 1 HOH HOH . L 5 HOH B 37 437 29 HOH HOH . L 5 HOH B 38 438 25 HOH HOH . L 5 HOH B 39 439 95 HOH HOH . L 5 HOH B 40 440 96 HOH HOH . L 5 HOH B 41 441 230 HOH HOH . L 5 HOH B 42 442 85 HOH HOH . L 5 HOH B 43 443 60 HOH HOH . L 5 HOH B 44 444 203 HOH HOH . L 5 HOH B 45 445 3 HOH HOH . L 5 HOH B 46 446 174 HOH HOH . L 5 HOH B 47 447 207 HOH HOH . L 5 HOH B 48 448 4 HOH HOH . L 5 HOH B 49 449 190 HOH HOH . L 5 HOH B 50 450 90 HOH HOH . L 5 HOH B 51 451 237 HOH HOH . L 5 HOH B 52 452 93 HOH HOH . L 5 HOH B 53 453 216 HOH HOH . L 5 HOH B 54 454 65 HOH HOH . L 5 HOH B 55 455 74 HOH HOH . L 5 HOH B 56 456 36 HOH HOH . L 5 HOH B 57 457 116 HOH HOH . L 5 HOH B 58 458 172 HOH HOH . L 5 HOH B 59 459 127 HOH HOH . L 5 HOH B 60 460 18 HOH HOH . L 5 HOH B 61 461 50 HOH HOH . L 5 HOH B 62 462 218 HOH HOH . L 5 HOH B 63 463 199 HOH HOH . L 5 HOH B 64 464 242 HOH HOH . L 5 HOH B 65 465 178 HOH HOH . L 5 HOH B 66 466 164 HOH HOH . L 5 HOH B 67 467 114 HOH HOH . L 5 HOH B 68 468 129 HOH HOH . L 5 HOH B 69 469 14 HOH HOH . L 5 HOH B 70 470 222 HOH HOH . L 5 HOH B 71 471 34 HOH HOH . L 5 HOH B 72 472 58 HOH HOH . L 5 HOH B 73 473 131 HOH HOH . L 5 HOH B 74 474 72 HOH HOH . L 5 HOH B 75 475 68 HOH HOH . L 5 HOH B 76 476 234 HOH HOH . L 5 HOH B 77 477 246 HOH HOH . L 5 HOH B 78 478 241 HOH HOH . L 5 HOH B 79 479 181 HOH HOH . L 5 HOH B 80 480 244 HOH HOH . L 5 HOH B 81 481 32 HOH HOH . L 5 HOH B 82 482 176 HOH HOH . L 5 HOH B 83 483 245 HOH HOH . M 5 HOH F 1 101 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . I 3 -4.676 -23.378 37.849 1 83.83 ? P PO4 302 B 1 HETATM 2 O O1 PO4 . . . I 3 -4.06 -23.912 36.549 1 72.48 ? O1 PO4 302 B 1 HETATM 3 O O2 PO4 . . . I 3 -6.186 -23.226 37.689 1 89.69 ? O2 PO4 302 B 1 HETATM 4 O O3 PO4 . . . I 3 -4.067 -22.017 38.178 1 63.31 ? O3 PO4 302 B 1 HETATM 5 O O4 PO4 . . . I 3 -4.394 -24.358 38.984 1 86.37 ? O4 PO4 302 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #