data_7F8C # _model_server_result.job_id yzH181USHFBJt-IRFO0Qag _model_server_result.datetime_utc '2025-02-19 20:03:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7F8C # _exptl.entry_id 7F8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SINEFUNGIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F8C _cell.length_a 78.018 _cell.length_b 78.018 _cell.length_c 101.536 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H23 N7 O5' _chem_comp.formula_weight 381.387 _chem_comp.id SFG _chem_comp.mon_nstd_flag . _chem_comp.name SINEFUNGIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ADENOSYL-ORNITHINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SFG sing 277 n n N HN1 SFG sing 278 n n N HN2 SFG sing 279 n n CA C SFG sing 280 n n CA CB SFG sing 281 n n CA HA SFG sing 282 n n C O SFG doub 283 n n C OXT SFG sing 284 n n OXT HXT SFG sing 285 n n CB CG SFG sing 286 n n CB HB1 SFG sing 287 n n CB HB2 SFG sing 288 n n CG CD SFG sing 289 n n CG HG1 SFG sing 290 n n CG HG2 SFG sing 291 n n CD NE SFG sing 292 n n CD C5' SFG sing 293 n n CD HD SFG sing 294 n n NE HNE1 SFG sing 295 n n NE HNE2 SFG sing 296 n n C5' C4' SFG sing 297 n n C5' "H5'1" SFG sing 298 n n C5' "H5'2" SFG sing 299 n n C4' O4' SFG sing 300 n n C4' C3' SFG sing 301 n n C4' H4' SFG sing 302 n n O4' C1' SFG sing 303 n n C3' O3' SFG sing 304 n n C3' C2' SFG sing 305 n n C3' H3' SFG sing 306 n n O3' HO3' SFG sing 307 n n C2' O2' SFG sing 308 n n C2' C1' SFG sing 309 n n C2' H2' SFG sing 310 n n O2' HO2' SFG sing 311 n n C1' N9 SFG sing 312 n n C1' H1' SFG sing 313 n n N9 C8 SFG sing 314 n y N9 C4 SFG sing 315 n y C8 N7 SFG doub 316 n y C8 H8 SFG sing 317 n n N7 C5 SFG sing 318 n y C5 C6 SFG sing 319 n y C5 C4 SFG doub 320 n y C6 N6 SFG sing 321 n n C6 N1 SFG doub 322 n y N6 HN61 SFG sing 323 n n N6 HN62 SFG sing 324 n n N1 C2 SFG sing 325 n y C2 N3 SFG doub 326 n y C2 H2 SFG sing 327 n n N3 C4 SFG sing 328 n y # _atom_sites.entry_id 7F8C _atom_sites.fract_transf_matrix[1][1] 0.012818 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SFG A 1 301 400 SFG SFG . C 3 SIN A 1 302 501 SIN SIN . D 4 HOH A 1 401 51 HOH HOH . D 4 HOH A 2 402 7 HOH HOH . D 4 HOH A 3 403 53 HOH HOH . D 4 HOH A 4 404 79 HOH HOH . D 4 HOH A 5 405 125 HOH HOH . D 4 HOH A 6 406 14 HOH HOH . D 4 HOH A 7 407 109 HOH HOH . D 4 HOH A 8 408 11 HOH HOH . D 4 HOH A 9 409 1 HOH HOH . D 4 HOH A 10 410 62 HOH HOH . D 4 HOH A 11 411 26 HOH HOH . D 4 HOH A 12 412 92 HOH HOH . D 4 HOH A 13 413 10 HOH HOH . D 4 HOH A 14 414 56 HOH HOH . D 4 HOH A 15 415 45 HOH HOH . D 4 HOH A 16 416 12 HOH HOH . D 4 HOH A 17 417 93 HOH HOH . D 4 HOH A 18 418 60 HOH HOH . D 4 HOH A 19 419 55 HOH HOH . D 4 HOH A 20 420 30 HOH HOH . D 4 HOH A 21 421 27 HOH HOH . D 4 HOH A 22 422 43 HOH HOH . D 4 HOH A 23 423 65 HOH HOH . D 4 HOH A 24 424 128 HOH HOH . D 4 HOH A 25 425 110 HOH HOH . D 4 HOH A 26 426 23 HOH HOH . D 4 HOH A 27 427 131 HOH HOH . D 4 HOH A 28 428 20 HOH HOH . D 4 HOH A 29 429 2 HOH HOH . D 4 HOH A 30 430 54 HOH HOH . D 4 HOH A 31 431 16 HOH HOH . D 4 HOH A 32 432 71 HOH HOH . D 4 HOH A 33 433 74 HOH HOH . D 4 HOH A 34 434 40 HOH HOH . D 4 HOH A 35 435 34 HOH HOH . D 4 HOH A 36 436 121 HOH HOH . D 4 HOH A 37 437 80 HOH HOH . D 4 HOH A 38 438 118 HOH HOH . D 4 HOH A 39 439 139 HOH HOH . D 4 HOH A 40 440 64 HOH HOH . D 4 HOH A 41 441 122 HOH HOH . D 4 HOH A 42 442 4 HOH HOH . D 4 HOH A 43 443 90 HOH HOH . D 4 HOH A 44 444 52 HOH HOH . D 4 HOH A 45 445 116 HOH HOH . D 4 HOH A 46 446 59 HOH HOH . D 4 HOH A 47 447 96 HOH HOH . D 4 HOH A 48 448 13 HOH HOH . D 4 HOH A 49 449 18 HOH HOH . D 4 HOH A 50 450 88 HOH HOH . D 4 HOH A 51 451 115 HOH HOH . D 4 HOH A 52 452 15 HOH HOH . D 4 HOH A 53 453 61 HOH HOH . D 4 HOH A 54 454 39 HOH HOH . D 4 HOH A 55 455 78 HOH HOH . D 4 HOH A 56 456 8 HOH HOH . D 4 HOH A 57 457 9 HOH HOH . D 4 HOH A 58 458 24 HOH HOH . D 4 HOH A 59 459 82 HOH HOH . D 4 HOH A 60 460 98 HOH HOH . D 4 HOH A 61 461 126 HOH HOH . D 4 HOH A 62 462 19 HOH HOH . D 4 HOH A 63 463 94 HOH HOH . D 4 HOH A 64 464 120 HOH HOH . D 4 HOH A 65 465 58 HOH HOH . D 4 HOH A 66 466 119 HOH HOH . D 4 HOH A 67 467 85 HOH HOH . D 4 HOH A 68 468 49 HOH HOH . D 4 HOH A 69 469 140 HOH HOH . D 4 HOH A 70 470 123 HOH HOH . D 4 HOH A 71 471 28 HOH HOH . D 4 HOH A 72 472 106 HOH HOH . D 4 HOH A 73 473 6 HOH HOH . D 4 HOH A 74 474 3 HOH HOH . D 4 HOH A 75 475 69 HOH HOH . D 4 HOH A 76 476 50 HOH HOH . D 4 HOH A 77 477 70 HOH HOH . D 4 HOH A 78 478 5 HOH HOH . D 4 HOH A 79 479 25 HOH HOH . D 4 HOH A 80 480 47 HOH HOH . D 4 HOH A 81 481 17 HOH HOH . D 4 HOH A 82 482 100 HOH HOH . D 4 HOH A 83 483 57 HOH HOH . D 4 HOH A 84 484 107 HOH HOH . D 4 HOH A 85 485 33 HOH HOH . D 4 HOH A 86 486 32 HOH HOH . D 4 HOH A 87 487 46 HOH HOH . D 4 HOH A 88 488 111 HOH HOH . D 4 HOH A 89 489 97 HOH HOH . D 4 HOH A 90 490 127 HOH HOH . D 4 HOH A 91 491 21 HOH HOH . D 4 HOH A 92 492 112 HOH HOH . D 4 HOH A 93 493 77 HOH HOH . D 4 HOH A 94 494 86 HOH HOH . D 4 HOH A 95 495 105 HOH HOH . D 4 HOH A 96 496 38 HOH HOH . D 4 HOH A 97 497 117 HOH HOH . D 4 HOH A 98 498 84 HOH HOH . D 4 HOH A 99 499 63 HOH HOH . D 4 HOH A 100 500 141 HOH HOH . D 4 HOH A 101 501 42 HOH HOH . D 4 HOH A 102 502 37 HOH HOH . D 4 HOH A 103 503 29 HOH HOH . D 4 HOH A 104 504 31 HOH HOH . D 4 HOH A 105 505 83 HOH HOH . D 4 HOH A 106 506 22 HOH HOH . D 4 HOH A 107 507 44 HOH HOH . D 4 HOH A 108 508 73 HOH HOH . D 4 HOH A 109 509 66 HOH HOH . D 4 HOH A 110 510 133 HOH HOH . D 4 HOH A 111 511 103 HOH HOH . D 4 HOH A 112 512 114 HOH HOH . D 4 HOH A 113 513 101 HOH HOH . D 4 HOH A 114 514 113 HOH HOH . D 4 HOH A 115 515 91 HOH HOH . D 4 HOH A 116 516 35 HOH HOH . D 4 HOH A 117 517 68 HOH HOH . D 4 HOH A 118 518 76 HOH HOH . D 4 HOH A 119 519 75 HOH HOH . D 4 HOH A 120 520 36 HOH HOH . D 4 HOH A 121 521 130 HOH HOH . D 4 HOH A 122 522 41 HOH HOH . D 4 HOH A 123 523 67 HOH HOH . D 4 HOH A 124 524 99 HOH HOH . D 4 HOH A 125 525 89 HOH HOH . D 4 HOH A 126 526 108 HOH HOH . D 4 HOH A 127 527 124 HOH HOH . D 4 HOH A 128 528 87 HOH HOH . D 4 HOH A 129 529 72 HOH HOH . D 4 HOH A 130 530 81 HOH HOH . D 4 HOH A 131 531 132 HOH HOH . D 4 HOH A 132 532 48 HOH HOH . D 4 HOH A 133 533 95 HOH HOH . D 4 HOH A 134 534 104 HOH HOH . D 4 HOH A 135 535 102 HOH HOH . D 4 HOH A 136 536 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SFG . . . B 2 38.446 10.522 33.571 1 59.84 ? N SFG 301 A 1 HETATM 2 C CA SFG . . . B 2 39.019 9.277 34.113 1 59.48 ? CA SFG 301 A 1 HETATM 3 C C SFG . . . B 2 38.96 8.238 33.002 1 59.18 ? C SFG 301 A 1 HETATM 4 O O SFG . . . B 2 37.851 8.118 32.437 1 58.23 ? O SFG 301 A 1 HETATM 5 O OXT SFG . . . B 2 40.086 7.783 32.61 1 59.6 ? OXT SFG 301 A 1 HETATM 6 C CB SFG . . . B 2 38.444 8.859 35.489 1 59.37 ? CB SFG 301 A 1 HETATM 7 C CG SFG . . . B 2 36.946 8.543 35.563 1 59.84 ? CG SFG 301 A 1 HETATM 8 C CD SFG . . . B 2 36.404 8.146 36.987 1 60.53 ? CD SFG 301 A 1 HETATM 9 N NE SFG . . . B 2 34.989 7.737 36.898 1 61.12 ? NE SFG 301 A 1 HETATM 10 C C5' SFG . . . B 2 36.502 9.213 38.107 1 60.31 ? C5' SFG 301 A 1 HETATM 11 C C4' SFG . . . B 2 37.896 9.672 38.54 1 60.63 ? C4' SFG 301 A 1 HETATM 12 O O4' SFG . . . B 2 37.656 10.561 39.656 1 61.03 ? O4' SFG 301 A 1 HETATM 13 C C3' SFG . . . B 2 38.762 8.524 39.088 1 60.68 ? C3' SFG 301 A 1 HETATM 14 O O3' SFG . . . B 2 40.039 8.599 38.438 1 60.67 ? O3' SFG 301 A 1 HETATM 15 C C2' SFG . . . B 2 38.931 8.873 40.594 1 60.98 ? C2' SFG 301 A 1 HETATM 16 O O2' SFG . . . B 2 40.249 8.509 41.118 1 60.9 ? O2' SFG 301 A 1 HETATM 17 C C1' SFG . . . B 2 38.764 10.377 40.565 1 60.94 ? C1' SFG 301 A 1 HETATM 18 N N9 SFG . . . B 2 38.331 10.985 41.848 1 60.7 ? N9 SFG 301 A 1 HETATM 19 C C8 SFG . . . B 2 37.402 10.427 42.624 1 60.46 ? C8 SFG 301 A 1 HETATM 20 N N7 SFG . . . B 2 36.996 11.349 43.501 1 60.3 ? N7 SFG 301 A 1 HETATM 21 C C5 SFG . . . B 2 37.551 12.512 43.162 1 60.27 ? C5 SFG 301 A 1 HETATM 22 C C6 SFG . . . B 2 37.478 13.728 43.721 1 60 ? C6 SFG 301 A 1 HETATM 23 N N6 SFG . . . B 2 36.669 13.837 44.77 1 60.15 ? N6 SFG 301 A 1 HETATM 24 N N1 SFG . . . B 2 38.146 14.793 43.242 1 59.63 ? N1 SFG 301 A 1 HETATM 25 C C2 SFG . . . B 2 38.967 14.689 42.002 1 59.76 ? C2 SFG 301 A 1 HETATM 26 N N3 SFG . . . B 2 39.011 13.292 41.496 1 59.92 ? N3 SFG 301 A 1 HETATM 27 C C4 SFG . . . B 2 38.257 12.307 42.036 1 60.4 ? C4 SFG 301 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #