data_7F8J # _model_server_result.job_id LzSuLIFOZO3sHp1QDto_NA _model_server_result.datetime_utc '2024-11-19 14:48:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f8j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"WA","auth_seq_id":506}' # _entry.id 7F8J # _exptl.entry_id 7F8J _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _entity.pdbx_number_of_molecules 42 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F8J _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F8J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N ? 2 KA N N ? 2 LA N N ? 2 MA N N ? 2 NA N N ? 2 OA N N ? 2 PA N N ? 2 QA N N ? 2 RA N N ? 2 SA N N ? 2 TA N N ? 2 UA N N ? 2 VA N N ? 2 WA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 84 A CYS 84 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 66 B CYS 66 1_555 B SG CYS 265 B CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 84 B CYS 84 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 C SG CYS 66 C CYS 66 1_555 C SG CYS 265 C CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 84 C CYS 84 1_555 C SG CYS 246 C CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 D SG CYS 66 D CYS 66 1_555 D SG CYS 265 D CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 D SG CYS 84 D CYS 84 1_555 D SG CYS 246 D CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 E SG CYS 66 E CYS 66 1_555 E SG CYS 265 E CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 E SG CYS 84 E CYS 84 1_555 E SG CYS 246 E CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 F SG CYS 66 F CYS 66 1_555 F SG CYS 265 F CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 F SG CYS 84 F CYS 84 1_555 F SG CYS 246 F CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 G SG CYS 66 G CYS 66 1_555 G SG CYS 265 G CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf14 G SG CYS 84 G CYS 84 1_555 G SG CYS 246 G CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id LBN _chem_comp.mon_nstd_flag . _chem_comp.name 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N1 LBN sing 171 n n O3 P1 LBN sing 172 n n O2 C9 LBN sing 173 n n O2 P1 LBN sing 174 n n C9 C6 LBN sing 175 n n O4 P1 LBN doub 176 n n P1 O1 LBN sing 177 n n C6 N1 LBN sing 178 n n N1 C15 LBN sing 179 n n N1 C18 LBN sing 180 n n O1 C1 LBN sing 181 n n C2 C1 LBN sing 182 n n C2 C3 LBN sing 183 n n C2 O7 LBN sing 184 n n C3 O5 LBN sing 185 n n O6 C25 LBN doub 186 n n O5 C25 LBN sing 187 n n O7 C34 LBN sing 188 n n C25 C26 LBN sing 189 n n C34 C35 LBN sing 190 n n C34 O8 LBN doub 191 n n C26 C27 LBN sing 192 n n C35 C36 LBN sing 193 n n C27 C28 LBN sing 194 n n C36 C37 LBN sing 195 n n C28 C29 LBN sing 196 n n C37 C38 LBN sing 197 n n C29 C30 LBN sing 198 n n C39 C38 LBN sing 199 n n C39 C40 LBN sing 200 n n C41 C40 LBN sing 201 n n C41 C42 LBN sing 202 n n C30 C31 LBN sing 203 n n C42 C5 LBN doub 204 z n C31 C32 LBN sing 205 n n C5 C8 LBN sing 206 n n C8 C11 LBN sing 207 n n C32 C33 LBN sing 208 n n C11 C14 LBN sing 209 n n C33 C4 LBN sing 210 n n C14 C17 LBN sing 211 n n C4 C7 LBN sing 212 n n C17 C20 LBN sing 213 n n C7 C10 LBN sing 214 n n C20 C22 LBN sing 215 n n C10 C13 LBN sing 216 n n C22 C23 LBN sing 217 n n C13 C16 LBN sing 218 n n C23 C24 LBN sing 219 n n C16 C19 LBN sing 220 n n C19 C21 LBN sing 221 n n C1 H1 LBN sing 222 n n C1 H2 LBN sing 223 n n C2 H3 LBN sing 224 n n C3 H4 LBN sing 225 n n C3 H5 LBN sing 226 n n C4 H6 LBN sing 227 n n C4 H7 LBN sing 228 n n C5 H8 LBN sing 229 n n C6 H9 LBN sing 230 n n C6 H10 LBN sing 231 n n C7 H11 LBN sing 232 n n C7 H12 LBN sing 233 n n C8 H13 LBN sing 234 n n C8 H14 LBN sing 235 n n C9 H15 LBN sing 236 n n C9 H16 LBN sing 237 n n C10 H17 LBN sing 238 n n C10 H18 LBN sing 239 n n C11 H19 LBN sing 240 n n C12 H20 LBN sing 241 n n C12 H21 LBN sing 242 n n C12 H22 LBN sing 243 n n C13 H23 LBN sing 244 n n C13 H24 LBN sing 245 n n C14 H25 LBN sing 246 n n C15 H26 LBN sing 247 n n C15 H27 LBN sing 248 n n C15 H28 LBN sing 249 n n C16 H30 LBN sing 250 n n C16 H31 LBN sing 251 n n C17 H32 LBN sing 252 n n C17 H33 LBN sing 253 n n C18 H34 LBN sing 254 n n C18 H35 LBN sing 255 n n C18 H36 LBN sing 256 n n C19 H37 LBN sing 257 n n C19 H38 LBN sing 258 n n C20 H39 LBN sing 259 n n C20 H40 LBN sing 260 n n C21 H41 LBN sing 261 n n C21 H42 LBN sing 262 n n C21 H43 LBN sing 263 n n C22 H44 LBN sing 264 n n C22 H45 LBN sing 265 n n C23 H46 LBN sing 266 n n C23 H47 LBN sing 267 n n C24 H48 LBN sing 268 n n C24 H49 LBN sing 269 n n C24 H50 LBN sing 270 n n C26 H51 LBN sing 271 n n C26 H52 LBN sing 272 n n C27 H53 LBN sing 273 n n C27 H54 LBN sing 274 n n C28 H55 LBN sing 275 n n C28 H56 LBN sing 276 n n C29 H57 LBN sing 277 n n C29 H58 LBN sing 278 n n C30 H59 LBN sing 279 n n C30 H60 LBN sing 280 n n C31 H61 LBN sing 281 n n C31 H62 LBN sing 282 n n C32 H63 LBN sing 283 n n C32 H64 LBN sing 284 n n C33 H65 LBN sing 285 n n C33 H66 LBN sing 286 n n C35 H67 LBN sing 287 n n C35 H68 LBN sing 288 n n C36 H69 LBN sing 289 n n C36 H70 LBN sing 290 n n C37 H71 LBN sing 291 n n C37 H72 LBN sing 292 n n C38 H73 LBN sing 293 n n C38 H74 LBN sing 294 n n C39 H75 LBN sing 295 n n C40 H76 LBN sing 296 n n C41 H77 LBN sing 297 n n C41 H78 LBN sing 298 n n C42 H79 LBN sing 299 n n C11 H80 LBN sing 300 n n C14 H81 LBN sing 301 n n C39 H82 LBN sing 302 n n C40 H83 LBN sing 303 n n # _atom_sites.entry_id 7F8J _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 LBN A 1 501 501 LBN LBN . I 2 LBN A 1 502 505 LBN LBN . J 2 LBN A 1 503 502 LBN LBN . K 2 LBN A 1 504 503 LBN LBN . L 2 LBN A 1 505 504 LBN LBN . M 2 LBN A 1 506 506 LBN LBN . N 2 LBN B 1 501 501 LBN LBN . O 2 LBN B 1 502 505 LBN LBN . P 2 LBN B 1 503 502 LBN LBN . Q 2 LBN B 1 504 503 LBN LBN . R 2 LBN B 1 505 504 LBN LBN . S 2 LBN B 1 506 506 LBN LBN . T 2 LBN C 1 501 501 LBN LBN . U 2 LBN C 1 502 505 LBN LBN . V 2 LBN C 1 503 502 LBN LBN . W 2 LBN C 1 504 503 LBN LBN . X 2 LBN C 1 505 504 LBN LBN . Y 2 LBN C 1 506 506 LBN LBN . Z 2 LBN D 1 501 502 LBN LBN . AA 2 LBN D 1 502 503 LBN LBN . BA 2 LBN D 1 503 504 LBN LBN . CA 2 LBN D 1 504 506 LBN LBN . DA 2 LBN D 1 505 501 LBN LBN . EA 2 LBN D 1 506 505 LBN LBN . FA 2 LBN E 1 501 501 LBN LBN . GA 2 LBN E 1 502 505 LBN LBN . HA 2 LBN E 1 503 502 LBN LBN . IA 2 LBN E 1 504 503 LBN LBN . JA 2 LBN E 1 505 504 LBN LBN . KA 2 LBN E 1 506 506 LBN LBN . LA 2 LBN F 1 501 501 LBN LBN . MA 2 LBN F 1 502 505 LBN LBN . NA 2 LBN F 1 503 502 LBN LBN . OA 2 LBN F 1 504 503 LBN LBN . PA 2 LBN F 1 505 504 LBN LBN . QA 2 LBN F 1 506 506 LBN LBN . RA 2 LBN G 1 501 502 LBN LBN . SA 2 LBN G 1 502 503 LBN LBN . TA 2 LBN G 1 503 504 LBN LBN . UA 2 LBN G 1 504 506 LBN LBN . VA 2 LBN G 1 505 501 LBN LBN . WA 2 LBN G 1 506 505 LBN LBN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LBN . . . WA 2 136.073 82.394 88.118 1 43.97 ? C1 LBN 506 G 1 HETATM 2 P P1 LBN . . . WA 2 134.158 84.214 88.316 1 43.97 ? P1 LBN 506 G 1 HETATM 3 C C2 LBN . . . WA 2 136.522 81.723 89.449 1 43.97 ? C2 LBN 506 G 1 HETATM 4 C C3 LBN . . . WA 2 136.248 80.151 89.348 1 43.97 ? C3 LBN 506 G 1 HETATM 5 C C4 LBN . . . WA 2 136.7 80.45 100.444 1 43.97 ? C4 LBN 506 G 1 HETATM 6 C C5 LBN . . . WA 2 140.011 85.995 100.95 1 43.97 ? C5 LBN 506 G 1 HETATM 7 O O1 LBN . . . WA 2 134.703 82.625 88.004 1 43.97 ? O1 LBN 506 G 1 HETATM 8 C C7 LBN . . . WA 2 137.302 79.439 101.458 1 43.97 ? C7 LBN 506 G 1 HETATM 9 C C8 LBN . . . WA 2 140.921 87.192 101.189 1 43.97 ? C8 LBN 506 G 1 HETATM 10 O O2 LBN . . . WA 2 132.414 84.032 88.019 1 43.97 ? O2 LBN 506 G 1 HETATM 11 C C10 LBN . . . WA 2 136.287 78.401 102.02 1 43.97 ? C10 LBN 506 G 1 HETATM 12 C C11 LBN . . . WA 2 141.801 87.149 102.48 1 43.97 ? C11 LBN 506 G 1 HETATM 13 O O3 LBN . . . WA 2 134.598 85.212 87.342 1 43.97 ? O3 LBN 506 G 1 HETATM 14 C C13 LBN . . . WA 2 136.221 77.056 101.246 1 43.97 ? C13 LBN 506 G 1 HETATM 15 C C14 LBN . . . WA 2 141.04 87.31 103.837 1 43.97 ? C14 LBN 506 G 1 HETATM 16 O O4 LBN . . . WA 2 134.207 84.461 89.806 1 43.97 ? O4 LBN 506 G 1 HETATM 17 C C17 LBN . . . WA 2 140.465 85.992 104.442 1 43.97 ? C17 LBN 506 G 1 HETATM 18 C C20 LBN . . . WA 2 141.415 84.76 104.391 1 43.97 ? C20 LBN 506 G 1 HETATM 19 C C22 LBN . . . WA 2 140.761 83.389 104.705 1 43.97 ? C22 LBN 506 G 1 HETATM 20 C C23 LBN . . . WA 2 139.708 82.956 103.662 1 43.97 ? C23 LBN 506 G 1 HETATM 21 C C24 LBN . . . WA 2 138.991 81.652 104.021 1 43.97 ? C24 LBN 506 G 1 HETATM 22 C C25 LBN . . . WA 2 135.959 79.145 91.56 1 43.97 ? C25 LBN 506 G 1 HETATM 23 O O5 LBN . . . WA 2 135.413 79.576 90.372 1 43.97 ? O5 LBN 506 G 1 HETATM 24 C C26 LBN . . . WA 2 135.134 78.268 92.523 1 43.97 ? C26 LBN 506 G 1 HETATM 25 O O6 LBN . . . WA 2 137.112 79.473 91.821 1 43.97 ? O6 LBN 506 G 1 HETATM 26 C C27 LBN . . . WA 2 134.526 79.025 93.743 1 43.97 ? C27 LBN 506 G 1 HETATM 27 C C28 LBN . . . WA 2 135.528 79.839 94.625 1 43.97 ? C28 LBN 506 G 1 HETATM 28 C C29 LBN . . . WA 2 135.15 79.917 96.133 1 43.97 ? C29 LBN 506 G 1 HETATM 29 C C30 LBN . . . WA 2 135.35 81.303 96.811 1 43.97 ? C30 LBN 506 G 1 HETATM 30 C C31 LBN . . . WA 2 136.822 81.764 97.014 1 43.97 ? C31 LBN 506 G 1 HETATM 31 C C32 LBN . . . WA 2 137.18 82.146 98.476 1 43.97 ? C32 LBN 506 G 1 HETATM 32 C C33 LBN . . . WA 2 137.678 80.961 99.354 1 43.97 ? C33 LBN 506 G 1 HETATM 33 C C34 LBN . . . WA 2 138.193 83.101 90.586 1 43.97 ? C34 LBN 506 G 1 HETATM 34 O O7 LBN . . . WA 2 137.883 82.063 89.737 1 43.97 ? O7 LBN 506 G 1 HETATM 35 C C35 LBN . . . WA 2 138.157 82.861 92.103 1 43.97 ? C35 LBN 506 G 1 HETATM 36 O O8 LBN . . . WA 2 138.49 84.181 90.093 1 43.97 ? O8 LBN 506 G 1 HETATM 37 C C36 LBN . . . WA 2 139.126 83.717 92.956 1 43.97 ? C36 LBN 506 G 1 HETATM 38 C C37 LBN . . . WA 2 138.895 83.63 94.494 1 43.97 ? C37 LBN 506 G 1 HETATM 39 C C38 LBN . . . WA 2 139.253 84.919 95.287 1 43.97 ? C38 LBN 506 G 1 HETATM 40 C C39 LBN . . . WA 2 138.338 85.194 96.514 1 43.97 ? C39 LBN 506 G 1 HETATM 41 C C40 LBN . . . WA 2 138.803 86.354 97.435 1 43.97 ? C40 LBN 506 G 1 HETATM 42 C C41 LBN . . . WA 2 140 86.035 98.381 1 43.97 ? C41 LBN 506 G 1 HETATM 43 C C42 LBN . . . WA 2 139.622 85.506 99.756 1 43.97 ? C42 LBN 506 G 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 43 #