data_7F8Y # _model_server_result.job_id CUSMVSG0YtACuYJcenuThA _model_server_result.datetime_utc '2024-12-21 14:19:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 7F8Y # _exptl.entry_id 7F8Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.452 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3S)-1-methyl-2-oxidanylidene-5-phenyl-3H-1,4-benzodiazepin-3-yl]-1H-indole-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.284 _cell.angle_gamma 90 _cell.entry_id 7F8Y _cell.length_a 54.78 _cell.length_b 72.42 _cell.length_c 86.14 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F8Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 123 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 114 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 205 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 196 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.058 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H20 N4 O2' _chem_comp.formula_weight 408.452 _chem_comp.id 1OZ _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3S)-1-methyl-2-oxidanylidene-5-phenyl-3H-1,4-benzodiazepin-3-yl]-1H-indole-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD CAE 1OZ doub 1 n y CAD CAF 1OZ sing 2 n y CAE CAK 1OZ sing 3 n y CAF CAL 1OZ doub 4 n y CAK CAX 1OZ doub 5 n y CAL CAX 1OZ sing 6 n y CAX CAV 1OZ sing 7 n n CAM CAG 1OZ doub 8 n y CAM CAZ 1OZ sing 9 n y CAG CAH 1OZ sing 10 n y CAV CAZ 1OZ sing 11 n n CAV N 1OZ doub 12 n n CAZ CBA 1OZ doub 13 n y CAH CAN 1OZ doub 14 n y N CA 1OZ sing 15 n n CBA CAN 1OZ sing 16 n y CBA NBE 1OZ sing 17 n n CA NAS 1OZ sing 18 n n CA C 1OZ sing 19 n n NBE C 1OZ sing 20 n n NBE CAA 1OZ sing 21 n n NAS CAU 1OZ sing 22 n n C O 1OZ doub 23 n n CAU OAB 1OZ doub 24 n n CAU CAY 1OZ sing 25 n n CAQ CAY 1OZ doub 26 n y CAQ CBB 1OZ sing 27 n y CAY NAT 1OZ sing 28 n y CBB CAO 1OZ doub 29 n y CBB CBC 1OZ sing 30 n y CAO CAI 1OZ sing 31 n y NAT CBC 1OZ sing 32 n y CBC CAP 1OZ doub 33 n y CAI CAJ 1OZ doub 34 n y CAP CAJ 1OZ sing 35 n y CA H3 1OZ sing 36 n n CAA H4 1OZ sing 37 n n CAA H5 1OZ sing 38 n n CAA H6 1OZ sing 39 n n CAD H7 1OZ sing 40 n n CAE H8 1OZ sing 41 n n CAF H9 1OZ sing 42 n n CAG H10 1OZ sing 43 n n CAH H11 1OZ sing 44 n n CAI H12 1OZ sing 45 n n CAJ H13 1OZ sing 46 n n CAK H14 1OZ sing 47 n n CAL H15 1OZ sing 48 n n CAM H16 1OZ sing 49 n n CAN H17 1OZ sing 50 n n CAO H18 1OZ sing 51 n n CAP H19 1OZ sing 52 n n CAQ H20 1OZ sing 53 n n NAS H22 1OZ sing 54 n n NAT H23 1OZ sing 55 n n # _atom_sites.entry_id 7F8Y _atom_sites.fract_transf_matrix[1][1] 0.018255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00568 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 1OZ _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1501 _pdbx_nonpoly_scheme.auth_seq_num 1201 _pdbx_nonpoly_scheme.pdb_mon_id 1OZ _pdbx_nonpoly_scheme.auth_mon_id DRG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 1OZ . . . B 2 5.723 21.373 54.143 1 73.37 ? N 1OZ 1501 A 1 HETATM 2 C CA 1OZ . . . B 2 6.262 21.979 55.339 1 75.44 ? CA 1OZ 1501 A 1 HETATM 3 C C 1OZ . . . B 2 5.103 22.266 56.33 1 81.17 ? C 1OZ 1501 A 1 HETATM 4 O O 1OZ . . . B 2 4.855 21.627 57.363 1 84.89 ? O 1OZ 1501 A 1 HETATM 5 C CAA 1OZ . . . B 2 3.148 23.694 56.846 1 75.49 ? CAA 1OZ 1501 A 1 HETATM 6 C CAD 1OZ . . . B 2 3.154 20.5 50.054 1 57.45 ? CAD 1OZ 1501 A 1 HETATM 7 C CAE 1OZ . . . B 2 4.532 20.247 50.126 1 62.24 ? CAE 1OZ 1501 A 1 HETATM 8 C CAF 1OZ . . . B 2 2.546 21.373 50.978 1 63.7 ? CAF 1OZ 1501 A 1 HETATM 9 C CAG 1OZ . . . B 2 4.699 26.091 52.553 1 69.02 ? CAG 1OZ 1501 A 1 HETATM 10 C CAH 1OZ . . . B 2 4.146 26.514 53.814 1 76.2 ? CAH 1OZ 1501 A 1 HETATM 11 C CAI 1OZ . . . B 2 11.645 17.383 59.551 1 62.91 ? CAI 1OZ 1501 A 1 HETATM 12 C CAJ 1OZ . . . B 2 11.915 18.493 60.418 1 64.67 ? CAJ 1OZ 1501 A 1 HETATM 13 C CAK 1OZ . . . B 2 5.286 20.871 51.127 1 67.09 ? CAK 1OZ 1501 A 1 HETATM 14 C CAL 1OZ . . . B 2 3.293 21.998 51.978 1 61.05 ? CAL 1OZ 1501 A 1 HETATM 15 C CAM 1OZ . . . B 2 5.122 24.771 52.386 1 63.3 ? CAM 1OZ 1501 A 1 HETATM 16 C CAN 1OZ . . . B 2 4.01 25.601 54.908 1 76.34 ? CAN 1OZ 1501 A 1 HETATM 17 C CAO 1OZ . . . B 2 10.806 17.535 58.48 1 59.07 ? CAO 1OZ 1501 A 1 HETATM 18 C CAP 1OZ . . . B 2 11.353 19.736 60.196 1 54.41 ? CAP 1OZ 1501 A 1 HETATM 19 C CAQ 1OZ . . . B 2 9.322 19.369 57.232 1 50.25 ? CAQ 1OZ 1501 A 1 HETATM 20 C CAU 1OZ . . . B 2 8.231 21.697 56.759 1 61.77 ? CAU 1OZ 1501 A 1 HETATM 21 C CAV 1OZ . . . B 2 5.539 22.369 53.119 1 77.42 ? CAV 1OZ 1501 A 1 HETATM 22 C CAX 1OZ . . . B 2 4.67 21.732 52.036 1 69.63 ? CAX 1OZ 1501 A 1 HETATM 23 C CAY 1OZ . . . B 2 9.154 20.72 57.521 1 50.7 ? CAY 1OZ 1501 A 1 HETATM 24 C CAZ 1OZ . . . B 2 4.976 23.8 53.509 1 71.17 ? CAZ 1OZ 1501 A 1 HETATM 25 C CBA 1OZ . . . B 2 4.454 24.216 54.718 1 73.51 ? CBA 1OZ 1501 A 1 HETATM 26 C CBB 1OZ . . . B 2 10.22 18.852 58.22 1 51.15 ? CBB 1OZ 1501 A 1 HETATM 27 C CBC 1OZ . . . B 2 10.491 19.898 59.04 1 61.81 ? CBC 1OZ 1501 A 1 HETATM 28 N NAS 1OZ . . . B 2 7.212 21.101 56.003 1 69.77 ? NAS 1OZ 1501 A 1 HETATM 29 N NAT 1OZ . . . B 2 9.815 21.022 58.583 1 61.47 ? NAT 1OZ 1501 A 1 HETATM 30 N NBE 1OZ . . . B 2 4.265 23.373 55.939 1 75.18 ? NBE 1OZ 1501 A 1 HETATM 31 O OAB 1OZ . . . B 2 8.325 22.826 56.873 1 57.72 ? OAB 1OZ 1501 A 1 # _model_server_stats.io_time_ms 122 _model_server_stats.parse_time_ms 44 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 1177 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 31 #