data_7F97
#
_model_server_result.job_id            UsDVReTRq9vqetHOZN8MHQ 
_model_server_result.datetime_utc      '2024-11-08 21:09:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7f97 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":802}' 
#
_entry.id    7F97 
#
_exptl.entry_id    7F97 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              477.531 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[(3S)-3-cyclopropyl-3-(hydroxymethyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7F97 
_cell.length_a            82.02 
_cell.length_b            140.6 
_cell.length_c            187.09 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7F97 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L,M,N,O,Y,Z 1 1 
C,D,P,Q,R,S,T,U,V,W,X,AA,BA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 L N N 
? 3 Q N N 
? 3 V N N 
#
_chem_comp.formula           'C26 H28 F N5 O3' 
_chem_comp.formula_weight    477.531 
_chem_comp.id                1XK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[(3S)-3-cyclopropyl-3-(hydroxymethyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C24 C23 1XK sing 1 n n 
C24 C22 1XK sing 2 n n 
C23 C22 1XK sing 3 n n 
C22 C20 1XK sing 4 n n 
O1 C21 1XK sing 5 n n 
O2 C25 1XK doub 6 n n 
C20 C25 1XK sing 7 n n 
C20 C21 1XK sing 8 n n 
C20 C19 1XK sing 9 n n 
C25 N4 1XK sing 10 n n 
C C1 1XK sing 11 n n 
C2 C1 1XK doub 12 n y 
C2 C3 1XK sing 13 n y 
C19 C18 1XK sing 14 n n 
N4 C3 1XK sing 15 n n 
N4 C18 1XK sing 16 n n 
C1 N 1XK sing 17 n y 
C3 C4 1XK doub 18 n y 
N C5 1XK doub 19 n y 
C4 C5 1XK sing 20 n y 
C5 C6 1XK sing 21 n n 
C6 N1 1XK sing 22 n n 
C6 O 1XK doub 23 n n 
N1 C7 1XK sing 24 n n 
C7 C8 1XK sing 25 n n 
C8 C9 1XK doub 26 n y 
C8 C13 1XK sing 27 n y 
C9 C10 1XK sing 28 n y 
C13 C12 1XK doub 29 n y 
C10 F 1XK sing 30 n n 
C10 C11 1XK doub 31 n y 
C12 C11 1XK sing 32 n y 
C12 C14 1XK sing 33 n n 
C14 C15 1XK sing 34 n y 
C14 C17 1XK doub 35 n y 
C15 N2 1XK doub 36 n y 
C17 N3 1XK sing 37 n y 
N2 N3 1XK sing 38 n y 
N3 C16 1XK sing 39 n n 
C4 H1 1XK sing 40 n n 
C H2 1XK sing 41 n n 
C H3 1XK sing 42 n n 
C H4 1XK sing 43 n n 
N1 H5 1XK sing 44 n n 
C2 H6 1XK sing 45 n n 
C11 H7 1XK sing 46 n n 
C13 H8 1XK sing 47 n n 
C15 H9 1XK sing 48 n n 
C16 H10 1XK sing 49 n n 
C16 H11 1XK sing 50 n n 
C16 H12 1XK sing 51 n n 
C17 H13 1XK sing 52 n n 
C18 H14 1XK sing 53 n n 
C18 H15 1XK sing 54 n n 
C19 H16 1XK sing 55 n n 
C19 H17 1XK sing 56 n n 
C21 H18 1XK sing 57 n n 
C21 H19 1XK sing 58 n n 
C22 H20 1XK sing 59 n n 
C23 H21 1XK sing 60 n n 
C23 H22 1XK sing 61 n n 
C24 H23 1XK sing 62 n n 
C24 H24 1XK sing 63 n n 
C7 H25 1XK sing 64 n n 
C7 H26 1XK sing 65 n n 
C9 H27 1XK sing 66 n n 
O1 H28 1XK sing 67 n n 
#
_atom_sites.entry_id                     7F97 
_atom_sites.fract_transf_matrix[1][1]    0.012192 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007112 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005345 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PRO A 1 801 801 PRO PRO . 
F 3 1XK A 1 802 901 1XK 1XK . 
G 4 BU1 A 1 803 902 BU1 BU1 . 
H 5 CL A 1 804 903 CL CL . 
I 5 CL A 1 805 904 CL CL . 
J 5 CL A 1 806 905 CL CL . 
K 2 PRO B 1 801 801 PRO PRO . 
L 3 1XK B 1 802 901 1XK 1XK . 
M 5 CL B 1 803 902 CL CL . 
N 5 CL B 1 804 903 CL CL . 
O 5 CL B 1 805 904 CL CL . 
P 2 PRO C 1 801 801 PRO PRO . 
Q 3 1XK C 1 802 901 1XK 1XK . 
R 6 HEZ C 1 803 902 HEZ HEZ . 
S 5 CL C 1 804 903 CL CL . 
T 5 CL C 1 805 904 CL CL . 
U 2 PRO D 1 801 801 PRO PRO . 
V 3 1XK D 1 802 901 1XK 1XK . 
W 5 CL D 1 803 902 CL CL . 
X 5 CL D 1 804 903 CL CL . 
Y 7 HOH A 1 901 4 HOH HOH . 
Y 7 HOH A 2 902 1 HOH HOH . 
Y 7 HOH A 3 903 2 HOH HOH . 
Y 7 HOH A 4 904 23 HOH HOH . 
Y 7 HOH A 5 905 7 HOH HOH . 
Y 7 HOH A 6 906 15 HOH HOH . 
Y 7 HOH A 7 907 3 HOH HOH . 
Y 7 HOH A 8 908 6 HOH HOH . 
Y 7 HOH A 9 909 9 HOH HOH . 
Y 7 HOH A 10 910 17 HOH HOH . 
Y 7 HOH A 11 911 10 HOH HOH . 
Y 7 HOH A 12 912 5 HOH HOH . 
Y 7 HOH A 13 913 8 HOH HOH . 
Y 7 HOH A 14 914 12 HOH HOH . 
Y 7 HOH A 15 915 11 HOH HOH . 
Y 7 HOH A 16 916 13 HOH HOH . 
Y 7 HOH A 17 917 14 HOH HOH . 
Z 7 HOH B 1 901 25 HOH HOH . 
Z 7 HOH B 2 902 28 HOH HOH . 
Z 7 HOH B 3 903 24 HOH HOH . 
Z 7 HOH B 4 904 16 HOH HOH . 
Z 7 HOH B 5 905 27 HOH HOH . 
Z 7 HOH B 6 906 30 HOH HOH . 
Z 7 HOH B 7 907 29 HOH HOH . 
Z 7 HOH B 8 908 21 HOH HOH . 
Z 7 HOH B 9 909 32 HOH HOH . 
Z 7 HOH B 10 910 31 HOH HOH . 
Z 7 HOH B 11 911 34 HOH HOH . 
Z 7 HOH B 12 912 19 HOH HOH . 
Z 7 HOH B 13 913 33 HOH HOH . 
Z 7 HOH B 14 914 35 HOH HOH . 
Z 7 HOH B 15 915 26 HOH HOH . 
Z 7 HOH B 16 916 36 HOH HOH . 
AA 7 HOH C 1 901 45 HOH HOH . 
AA 7 HOH C 2 902 47 HOH HOH . 
AA 7 HOH C 3 903 46 HOH HOH . 
AA 7 HOH C 4 904 20 HOH HOH . 
AA 7 HOH C 5 905 48 HOH HOH . 
AA 7 HOH C 6 906 53 HOH HOH . 
AA 7 HOH C 7 907 22 HOH HOH . 
AA 7 HOH C 8 908 50 HOH HOH . 
AA 7 HOH C 9 909 49 HOH HOH . 
AA 7 HOH C 10 910 52 HOH HOH . 
AA 7 HOH C 11 911 55 HOH HOH . 
AA 7 HOH C 12 912 56 HOH HOH . 
AA 7 HOH C 13 913 54 HOH HOH . 
AA 7 HOH C 14 914 51 HOH HOH . 
BA 7 HOH D 1 901 39 HOH HOH . 
BA 7 HOH D 2 902 38 HOH HOH . 
BA 7 HOH D 3 903 40 HOH HOH . 
BA 7 HOH D 4 904 37 HOH HOH . 
BA 7 HOH D 5 905 44 HOH HOH . 
BA 7 HOH D 6 906 43 HOH HOH . 
BA 7 HOH D 7 907 42 HOH HOH . 
BA 7 HOH D 8 908 41 HOH HOH . 
BA 7 HOH D 9 909 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 1XK . . . L 3 50.071 -6.067 -22.551 0.95 45.53 ? C4 1XK 802 B 1 
HETATM 2 C C 1XK . . . L 3 46.266 -4.502 -23.699 0.95 51.03 ? C 1XK 802 B 1 
HETATM 3 N N 1XK . . . L 3 48.192 -4.692 -22.162 0.95 54.21 ? N 1XK 802 B 1 
HETATM 4 N N1 1XK . . . L 3 49.146 -4.338 -19.371 0.95 53.94 ? N1 1XK 802 B 1 
HETATM 5 C C3 1XK . . . L 3 49.525 -6.502 -23.743 0.95 54.97 ? C3 1XK 802 B 1 
HETATM 6 C C2 1XK . . . L 3 48.275 -6.01 -24.149 0.95 53.64 ? C2 1XK 802 B 1 
HETATM 7 C C1 1XK . . . L 3 47.636 -5.089 -23.309 0.95 54.11 ? C1 1XK 802 B 1 
HETATM 8 O O 1XK . . . L 3 51.212 -4.819 -20.347 0.95 54.18 ? O 1XK 802 B 1 
HETATM 9 C C10 1XK . . . L 3 49.019 -0.184 -17.686 0.95 60.23 ? C10 1XK 802 B 1 
HETATM 10 C C11 1XK . . . L 3 50.168 0.379 -18.263 0.95 49 ? C11 1XK 802 B 1 
HETATM 11 C C12 1XK . . . L 3 51.171 -0.463 -18.772 0.95 55.3 ? C12 1XK 802 B 1 
HETATM 12 C C13 1XK . . . L 3 51.016 -1.86 -18.722 0.95 48.1 ? C13 1XK 802 B 1 
HETATM 13 C C14 1XK . . . L 3 52.444 0.144 -19.411 0.95 63.78 ? C14 1XK 802 B 1 
HETATM 14 C C15 1XK . . . L 3 53.724 -0.464 -19.548 0.95 67.54 ? C15 1XK 802 B 1 
HETATM 15 C C16 1XK . . . L 3 54.404 2.699 -21.11 0.95 80.63 ? C16 1XK 802 B 1 
HETATM 16 C C17 1XK . . . L 3 52.591 1.425 -20.01 0.95 71.12 ? C17 1XK 802 B 1 
HETATM 17 C C18 1XK . . . L 3 51.318 -8.219 -23.932 0.95 63.5 ? C18 1XK 802 B 1 
HETATM 18 C C19 1XK . . . L 3 52.348 -8.59 -25.171 0.95 61.11 ? C19 1XK 802 B 1 
HETATM 19 C C20 1XK . . . L 3 51.488 -8.885 -26.141 0.95 64.8 ? C20 1XK 802 B 1 
HETATM 20 C C21 1XK . . . L 3 52.211 -8.862 -27.507 0.95 74.21 ? C21 1XK 802 B 1 
HETATM 21 C C22 1XK . . . L 3 50.801 -10.289 -25.824 0.95 67.8 ? C22 1XK 802 B 1 
HETATM 22 C C23 1XK . . . L 3 49.988 -11.353 -26.208 0.95 68.74 ? C23 1XK 802 B 1 
HETATM 23 C C24 1XK . . . L 3 50.571 -11.341 -24.945 0.95 71.55 ? C24 1XK 802 B 1 
HETATM 24 C C25 1XK . . . L 3 50.425 -7.724 -26.045 0.95 60.84 ? C25 1XK 802 B 1 
HETATM 25 C C5 1XK . . . L 3 49.375 -5.158 -21.785 0.95 50.88 ? C5 1XK 802 B 1 
HETATM 26 C C6 1XK . . . L 3 50.03 -4.745 -20.465 0.95 53.05 ? C6 1XK 802 B 1 
HETATM 27 C C7 1XK . . . L 3 49.672 -3.929 -18.069 0.95 54.85 ? C7 1XK 802 B 1 
HETATM 28 C C8 1XK . . . L 3 49.863 -2.401 -18.142 0.95 50.94 ? C8 1XK 802 B 1 
HETATM 29 C C9 1XK . . . L 3 48.867 -1.572 -17.628 0.95 54.23 ? C9 1XK 802 B 1 
HETATM 30 F F 1XK . . . L 3 48.033 0.611 -17.169 0.95 69.79 ? F 1XK 802 B 1 
HETATM 31 N N2 1XK . . . L 3 54.506 0.403 -20.161 0.95 72.62 ? N2 1XK 802 B 1 
HETATM 32 N N3 1XK . . . L 3 53.838 1.526 -20.435 0.95 74.52 ? N3 1XK 802 B 1 
HETATM 33 N N4 1XK . . . L 3 50.331 -7.482 -24.48 0.95 61.13 ? N4 1XK 802 B 1 
HETATM 34 O O1 1XK . . . L 3 51.454 -9.674 -28.366 0.95 81.59 ? O1 1XK 802 B 1 
HETATM 35 O O2 1XK . . . L 3 49.278 -8.024 -26.497 0.95 58.97 ? O2 1XK 802 B 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#