data_7F97 # _model_server_result.job_id UnZhM_TKcBbQWrIfIIXcQQ _model_server_result.datetime_utc '2024-11-08 20:48:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f97 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":802}' # _entry.id 7F97 # _exptl.entry_id 7F97 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.531 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(3S)-3-cyclopropyl-3-(hydroxymethyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F97 _cell.length_a 82.02 _cell.length_b 140.6 _cell.length_c 187.09 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F97 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,Y,Z 1 1 C,D,P,Q,R,S,T,U,V,W,X,AA,BA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 L N N ? 3 Q N N ? 3 V N N # _chem_comp.formula 'C26 H28 F N5 O3' _chem_comp.formula_weight 477.531 _chem_comp.id 1XK _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(3S)-3-cyclopropyl-3-(hydroxymethyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C23 1XK sing 1 n n C24 C22 1XK sing 2 n n C23 C22 1XK sing 3 n n C22 C20 1XK sing 4 n n O1 C21 1XK sing 5 n n O2 C25 1XK doub 6 n n C20 C25 1XK sing 7 n n C20 C21 1XK sing 8 n n C20 C19 1XK sing 9 n n C25 N4 1XK sing 10 n n C C1 1XK sing 11 n n C2 C1 1XK doub 12 n y C2 C3 1XK sing 13 n y C19 C18 1XK sing 14 n n N4 C3 1XK sing 15 n n N4 C18 1XK sing 16 n n C1 N 1XK sing 17 n y C3 C4 1XK doub 18 n y N C5 1XK doub 19 n y C4 C5 1XK sing 20 n y C5 C6 1XK sing 21 n n C6 N1 1XK sing 22 n n C6 O 1XK doub 23 n n N1 C7 1XK sing 24 n n C7 C8 1XK sing 25 n n C8 C9 1XK doub 26 n y C8 C13 1XK sing 27 n y C9 C10 1XK sing 28 n y C13 C12 1XK doub 29 n y C10 F 1XK sing 30 n n C10 C11 1XK doub 31 n y C12 C11 1XK sing 32 n y C12 C14 1XK sing 33 n n C14 C15 1XK sing 34 n y C14 C17 1XK doub 35 n y C15 N2 1XK doub 36 n y C17 N3 1XK sing 37 n y N2 N3 1XK sing 38 n y N3 C16 1XK sing 39 n n C4 H1 1XK sing 40 n n C H2 1XK sing 41 n n C H3 1XK sing 42 n n C H4 1XK sing 43 n n N1 H5 1XK sing 44 n n C2 H6 1XK sing 45 n n C11 H7 1XK sing 46 n n C13 H8 1XK sing 47 n n C15 H9 1XK sing 48 n n C16 H10 1XK sing 49 n n C16 H11 1XK sing 50 n n C16 H12 1XK sing 51 n n C17 H13 1XK sing 52 n n C18 H14 1XK sing 53 n n C18 H15 1XK sing 54 n n C19 H16 1XK sing 55 n n C19 H17 1XK sing 56 n n C21 H18 1XK sing 57 n n C21 H19 1XK sing 58 n n C22 H20 1XK sing 59 n n C23 H21 1XK sing 60 n n C23 H22 1XK sing 61 n n C24 H23 1XK sing 62 n n C24 H24 1XK sing 63 n n C7 H25 1XK sing 64 n n C7 H26 1XK sing 65 n n C9 H27 1XK sing 66 n n O1 H28 1XK sing 67 n n # _atom_sites.entry_id 7F97 _atom_sites.fract_transf_matrix[1][1] 0.012192 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007112 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PRO A 1 801 801 PRO PRO . F 3 1XK A 1 802 901 1XK 1XK . G 4 BU1 A 1 803 902 BU1 BU1 . H 5 CL A 1 804 903 CL CL . I 5 CL A 1 805 904 CL CL . J 5 CL A 1 806 905 CL CL . K 2 PRO B 1 801 801 PRO PRO . L 3 1XK B 1 802 901 1XK 1XK . M 5 CL B 1 803 902 CL CL . N 5 CL B 1 804 903 CL CL . O 5 CL B 1 805 904 CL CL . P 2 PRO C 1 801 801 PRO PRO . Q 3 1XK C 1 802 901 1XK 1XK . R 6 HEZ C 1 803 902 HEZ HEZ . S 5 CL C 1 804 903 CL CL . T 5 CL C 1 805 904 CL CL . U 2 PRO D 1 801 801 PRO PRO . V 3 1XK D 1 802 901 1XK 1XK . W 5 CL D 1 803 902 CL CL . X 5 CL D 1 804 903 CL CL . Y 7 HOH A 1 901 4 HOH HOH . Y 7 HOH A 2 902 1 HOH HOH . Y 7 HOH A 3 903 2 HOH HOH . Y 7 HOH A 4 904 23 HOH HOH . Y 7 HOH A 5 905 7 HOH HOH . Y 7 HOH A 6 906 15 HOH HOH . Y 7 HOH A 7 907 3 HOH HOH . Y 7 HOH A 8 908 6 HOH HOH . Y 7 HOH A 9 909 9 HOH HOH . Y 7 HOH A 10 910 17 HOH HOH . Y 7 HOH A 11 911 10 HOH HOH . Y 7 HOH A 12 912 5 HOH HOH . Y 7 HOH A 13 913 8 HOH HOH . Y 7 HOH A 14 914 12 HOH HOH . Y 7 HOH A 15 915 11 HOH HOH . Y 7 HOH A 16 916 13 HOH HOH . Y 7 HOH A 17 917 14 HOH HOH . Z 7 HOH B 1 901 25 HOH HOH . Z 7 HOH B 2 902 28 HOH HOH . Z 7 HOH B 3 903 24 HOH HOH . Z 7 HOH B 4 904 16 HOH HOH . Z 7 HOH B 5 905 27 HOH HOH . Z 7 HOH B 6 906 30 HOH HOH . Z 7 HOH B 7 907 29 HOH HOH . Z 7 HOH B 8 908 21 HOH HOH . Z 7 HOH B 9 909 32 HOH HOH . Z 7 HOH B 10 910 31 HOH HOH . Z 7 HOH B 11 911 34 HOH HOH . Z 7 HOH B 12 912 19 HOH HOH . Z 7 HOH B 13 913 33 HOH HOH . Z 7 HOH B 14 914 35 HOH HOH . Z 7 HOH B 15 915 26 HOH HOH . Z 7 HOH B 16 916 36 HOH HOH . AA 7 HOH C 1 901 45 HOH HOH . AA 7 HOH C 2 902 47 HOH HOH . AA 7 HOH C 3 903 46 HOH HOH . AA 7 HOH C 4 904 20 HOH HOH . AA 7 HOH C 5 905 48 HOH HOH . AA 7 HOH C 6 906 53 HOH HOH . AA 7 HOH C 7 907 22 HOH HOH . AA 7 HOH C 8 908 50 HOH HOH . AA 7 HOH C 9 909 49 HOH HOH . AA 7 HOH C 10 910 52 HOH HOH . AA 7 HOH C 11 911 55 HOH HOH . AA 7 HOH C 12 912 56 HOH HOH . AA 7 HOH C 13 913 54 HOH HOH . AA 7 HOH C 14 914 51 HOH HOH . BA 7 HOH D 1 901 39 HOH HOH . BA 7 HOH D 2 902 38 HOH HOH . BA 7 HOH D 3 903 40 HOH HOH . BA 7 HOH D 4 904 37 HOH HOH . BA 7 HOH D 5 905 44 HOH HOH . BA 7 HOH D 6 906 43 HOH HOH . BA 7 HOH D 7 907 42 HOH HOH . BA 7 HOH D 8 908 41 HOH HOH . BA 7 HOH D 9 909 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 1XK . . . Q 3 57.185 17.834 5.922 0.97 66.54 ? C4 1XK 802 C 1 HETATM 2 C C 1XK . . . Q 3 54.567 15.192 8.065 0.97 63.54 ? C 1XK 802 C 1 HETATM 3 N N 1XK . . . Q 3 55.228 16.492 6.04 0.97 68.76 ? N 1XK 802 C 1 HETATM 4 N N1 1XK . . . Q 3 54.305 17.639 3.438 0.97 63.48 ? N1 1XK 802 C 1 HETATM 5 C C3 1XK . . . Q 3 57.506 17.482 7.236 0.97 68.49 ? C3 1XK 802 C 1 HETATM 6 C C2 1XK . . . Q 3 56.652 16.623 7.939 0.97 65.18 ? C2 1XK 802 C 1 HETATM 7 C C1 1XK . . . Q 3 55.509 16.14 7.298 0.97 66.6 ? C1 1XK 802 C 1 HETATM 8 O O 1XK . . . Q 3 56.522 18.123 3.169 0.97 61.71 ? O 1XK 802 C 1 HETATM 9 C C10 1XK . . . Q 3 53.038 14.982 0.058 0.97 66.98 ? C10 1XK 802 C 1 HETATM 10 C C11 1XK . . . Q 3 54.277 14.535 -0.428 0.97 65.76 ? C11 1XK 802 C 1 HETATM 11 C C12 1XK . . . Q 3 55.453 15.232 -0.096 0.97 70.63 ? C12 1XK 802 C 1 HETATM 12 C C13 1XK . . . Q 3 55.394 16.372 0.71 0.97 66.19 ? C13 1XK 802 C 1 HETATM 13 C C14 1XK . . . Q 3 56.817 14.755 -0.635 0.97 76.5 ? C14 1XK 802 C 1 HETATM 14 C C15 1XK . . . Q 3 58.066 15.429 -0.558 0.97 79.64 ? C15 1XK 802 C 1 HETATM 15 C C16 1XK . . . Q 3 59.07 12.468 -2.349 0.97 83.86 ? C16 1XK 802 C 1 HETATM 16 C C17 1XK . . . Q 3 57.091 13.553 -1.34 0.97 80.65 ? C17 1XK 802 C 1 HETATM 17 C C18 1XK . . . Q 3 59.339 19.162 7.483 0.97 64.04 ? C18 1XK 802 C 1 HETATM 18 C C19 1XK . . . Q 3 60.698 19.225 8.426 0.97 63.5 ? C19 1XK 802 C 1 HETATM 19 C C20 1XK . . . Q 3 60.302 18.788 9.628 0.97 72.88 ? C20 1XK 802 C 1 HETATM 20 C C21 1XK . . . Q 3 61.291 17.754 10.227 0.97 76.38 ? C21 1XK 802 C 1 HETATM 21 C C22 1XK . . . Q 3 60.032 20.012 10.602 0.97 81.23 ? C22 1XK 802 C 1 HETATM 22 C C23 1XK . . . Q 3 59.12 20.849 11.225 0.97 83.33 ? C23 1XK 802 C 1 HETATM 23 C C24 1XK . . . Q 3 60.485 21.016 11.446 0.97 83.82 ? C24 1XK 802 C 1 HETATM 24 C C25 1XK . . . Q 3 58.906 18.109 9.432 0.97 69.21 ? C25 1XK 802 C 1 HETATM 25 C C5 1XK . . . Q 3 56.027 17.308 5.351 0.97 64.99 ? C5 1XK 802 C 1 HETATM 26 C C6 1XK . . . Q 3 55.684 17.717 3.907 0.97 60.84 ? C6 1XK 802 C 1 HETATM 27 C C7 1XK . . . Q 3 54.019 18.047 2.064 0.97 65.82 ? C7 1XK 802 C 1 HETATM 28 C C8 1XK . . . Q 3 54.147 16.803 1.173 0.97 67.39 ? C8 1XK 802 C 1 HETATM 29 C C9 1XK . . . Q 3 52.979 16.112 0.858 0.97 67.69 ? C9 1XK 802 C 1 HETATM 30 F F 1XK . . . Q 3 51.867 14.342 -0.233 0.97 71.73 ? F 1XK 802 C 1 HETATM 31 N N2 1XK . . . Q 3 58.954 14.66 -1.158 0.97 81.97 ? N2 1XK 802 C 1 HETATM 32 N N3 1XK . . . Q 3 58.379 13.545 -1.626 0.97 83.33 ? N3 1XK 802 C 1 HETATM 33 N N4 1XK . . . Q 3 58.721 18.029 7.862 0.97 69.04 ? N4 1XK 802 C 1 HETATM 34 O O1 1XK . . . Q 3 62.524 18.387 10.485 0.97 81.44 ? O1 1XK 802 C 1 HETATM 35 O O2 1XK . . . Q 3 58.908 16.961 9.946 0.97 70.9 ? O2 1XK 802 C 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 76 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #