data_7F97 # _model_server_result.job_id PDgbcjCQ53yo-a1dSpPnUQ _model_server_result.datetime_utc '2024-11-08 21:08:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f97 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":802}' # _entry.id 7F97 # _exptl.entry_id 7F97 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.531 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(3S)-3-cyclopropyl-3-(hydroxymethyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F97 _cell.length_a 82.02 _cell.length_b 140.6 _cell.length_c 187.09 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F97 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,Y,Z 1 1 C,D,P,Q,R,S,T,U,V,W,X,AA,BA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 L N N ? 3 Q N N ? 3 V N N # _chem_comp.formula 'C26 H28 F N5 O3' _chem_comp.formula_weight 477.531 _chem_comp.id 1XK _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(3S)-3-cyclopropyl-3-(hydroxymethyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C23 1XK sing 1 n n C24 C22 1XK sing 2 n n C23 C22 1XK sing 3 n n C22 C20 1XK sing 4 n n O1 C21 1XK sing 5 n n O2 C25 1XK doub 6 n n C20 C25 1XK sing 7 n n C20 C21 1XK sing 8 n n C20 C19 1XK sing 9 n n C25 N4 1XK sing 10 n n C C1 1XK sing 11 n n C2 C1 1XK doub 12 n y C2 C3 1XK sing 13 n y C19 C18 1XK sing 14 n n N4 C3 1XK sing 15 n n N4 C18 1XK sing 16 n n C1 N 1XK sing 17 n y C3 C4 1XK doub 18 n y N C5 1XK doub 19 n y C4 C5 1XK sing 20 n y C5 C6 1XK sing 21 n n C6 N1 1XK sing 22 n n C6 O 1XK doub 23 n n N1 C7 1XK sing 24 n n C7 C8 1XK sing 25 n n C8 C9 1XK doub 26 n y C8 C13 1XK sing 27 n y C9 C10 1XK sing 28 n y C13 C12 1XK doub 29 n y C10 F 1XK sing 30 n n C10 C11 1XK doub 31 n y C12 C11 1XK sing 32 n y C12 C14 1XK sing 33 n n C14 C15 1XK sing 34 n y C14 C17 1XK doub 35 n y C15 N2 1XK doub 36 n y C17 N3 1XK sing 37 n y N2 N3 1XK sing 38 n y N3 C16 1XK sing 39 n n C4 H1 1XK sing 40 n n C H2 1XK sing 41 n n C H3 1XK sing 42 n n C H4 1XK sing 43 n n N1 H5 1XK sing 44 n n C2 H6 1XK sing 45 n n C11 H7 1XK sing 46 n n C13 H8 1XK sing 47 n n C15 H9 1XK sing 48 n n C16 H10 1XK sing 49 n n C16 H11 1XK sing 50 n n C16 H12 1XK sing 51 n n C17 H13 1XK sing 52 n n C18 H14 1XK sing 53 n n C18 H15 1XK sing 54 n n C19 H16 1XK sing 55 n n C19 H17 1XK sing 56 n n C21 H18 1XK sing 57 n n C21 H19 1XK sing 58 n n C22 H20 1XK sing 59 n n C23 H21 1XK sing 60 n n C23 H22 1XK sing 61 n n C24 H23 1XK sing 62 n n C24 H24 1XK sing 63 n n C7 H25 1XK sing 64 n n C7 H26 1XK sing 65 n n C9 H27 1XK sing 66 n n O1 H28 1XK sing 67 n n # _atom_sites.entry_id 7F97 _atom_sites.fract_transf_matrix[1][1] 0.012192 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007112 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PRO A 1 801 801 PRO PRO . F 3 1XK A 1 802 901 1XK 1XK . G 4 BU1 A 1 803 902 BU1 BU1 . H 5 CL A 1 804 903 CL CL . I 5 CL A 1 805 904 CL CL . J 5 CL A 1 806 905 CL CL . K 2 PRO B 1 801 801 PRO PRO . L 3 1XK B 1 802 901 1XK 1XK . M 5 CL B 1 803 902 CL CL . N 5 CL B 1 804 903 CL CL . O 5 CL B 1 805 904 CL CL . P 2 PRO C 1 801 801 PRO PRO . Q 3 1XK C 1 802 901 1XK 1XK . R 6 HEZ C 1 803 902 HEZ HEZ . S 5 CL C 1 804 903 CL CL . T 5 CL C 1 805 904 CL CL . U 2 PRO D 1 801 801 PRO PRO . V 3 1XK D 1 802 901 1XK 1XK . W 5 CL D 1 803 902 CL CL . X 5 CL D 1 804 903 CL CL . Y 7 HOH A 1 901 4 HOH HOH . Y 7 HOH A 2 902 1 HOH HOH . Y 7 HOH A 3 903 2 HOH HOH . Y 7 HOH A 4 904 23 HOH HOH . Y 7 HOH A 5 905 7 HOH HOH . Y 7 HOH A 6 906 15 HOH HOH . Y 7 HOH A 7 907 3 HOH HOH . Y 7 HOH A 8 908 6 HOH HOH . Y 7 HOH A 9 909 9 HOH HOH . Y 7 HOH A 10 910 17 HOH HOH . Y 7 HOH A 11 911 10 HOH HOH . Y 7 HOH A 12 912 5 HOH HOH . Y 7 HOH A 13 913 8 HOH HOH . Y 7 HOH A 14 914 12 HOH HOH . Y 7 HOH A 15 915 11 HOH HOH . Y 7 HOH A 16 916 13 HOH HOH . Y 7 HOH A 17 917 14 HOH HOH . Z 7 HOH B 1 901 25 HOH HOH . Z 7 HOH B 2 902 28 HOH HOH . Z 7 HOH B 3 903 24 HOH HOH . Z 7 HOH B 4 904 16 HOH HOH . Z 7 HOH B 5 905 27 HOH HOH . Z 7 HOH B 6 906 30 HOH HOH . Z 7 HOH B 7 907 29 HOH HOH . Z 7 HOH B 8 908 21 HOH HOH . Z 7 HOH B 9 909 32 HOH HOH . Z 7 HOH B 10 910 31 HOH HOH . Z 7 HOH B 11 911 34 HOH HOH . Z 7 HOH B 12 912 19 HOH HOH . Z 7 HOH B 13 913 33 HOH HOH . Z 7 HOH B 14 914 35 HOH HOH . Z 7 HOH B 15 915 26 HOH HOH . Z 7 HOH B 16 916 36 HOH HOH . AA 7 HOH C 1 901 45 HOH HOH . AA 7 HOH C 2 902 47 HOH HOH . AA 7 HOH C 3 903 46 HOH HOH . AA 7 HOH C 4 904 20 HOH HOH . AA 7 HOH C 5 905 48 HOH HOH . AA 7 HOH C 6 906 53 HOH HOH . AA 7 HOH C 7 907 22 HOH HOH . AA 7 HOH C 8 908 50 HOH HOH . AA 7 HOH C 9 909 49 HOH HOH . AA 7 HOH C 10 910 52 HOH HOH . AA 7 HOH C 11 911 55 HOH HOH . AA 7 HOH C 12 912 56 HOH HOH . AA 7 HOH C 13 913 54 HOH HOH . AA 7 HOH C 14 914 51 HOH HOH . BA 7 HOH D 1 901 39 HOH HOH . BA 7 HOH D 2 902 38 HOH HOH . BA 7 HOH D 3 903 40 HOH HOH . BA 7 HOH D 4 904 37 HOH HOH . BA 7 HOH D 5 905 44 HOH HOH . BA 7 HOH D 6 906 43 HOH HOH . BA 7 HOH D 7 907 42 HOH HOH . BA 7 HOH D 8 908 41 HOH HOH . BA 7 HOH D 9 909 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 1XK . . . V 3 29.871 30.022 17.519 1 72.44 ? C4 1XK 802 D 1 HETATM 2 C C 1XK . . . V 3 33.736 31.024 19.105 1 55.31 ? C 1XK 802 D 1 HETATM 3 N N 1XK . . . V 3 31.949 31.154 17.38 1 72.17 ? N 1XK 802 D 1 HETATM 4 N N1 1XK . . . V 3 31.306 31.768 14.492 1 73.01 ? N1 1XK 802 D 1 HETATM 5 C C3 1XK . . . V 3 30.269 29.499 18.74 1 74.72 ? C3 1XK 802 D 1 HETATM 6 C C2 1XK . . . V 3 31.526 29.809 19.263 1 67.67 ? C2 1XK 802 D 1 HETATM 7 C C1 1XK . . . V 3 32.352 30.658 18.544 1 59.87 ? C1 1XK 802 D 1 HETATM 8 O O 1XK . . . V 3 29.14 31.566 15.333 1 75.56 ? O 1XK 802 D 1 HETATM 9 C C10 1XK . . . V 3 31.208 36.153 13.179 1 65.73 ? C10 1XK 802 D 1 HETATM 10 C C11 1XK . . . V 3 29.943 36.562 13.61 1 61.96 ? C11 1XK 802 D 1 HETATM 11 C C12 1XK . . . V 3 28.984 35.591 13.894 1 68.39 ? C12 1XK 802 D 1 HETATM 12 C C13 1XK . . . V 3 29.297 34.229 13.767 1 58.81 ? C13 1XK 802 D 1 HETATM 13 C C14 1XK . . . V 3 27.578 36.009 14.378 1 78.13 ? C14 1XK 802 D 1 HETATM 14 C C15 1XK . . . V 3 26.368 35.266 14.281 1 82.28 ? C15 1XK 802 D 1 HETATM 15 C C16 1XK . . . V 3 25.144 38.218 15.943 1 89.91 ? C16 1XK 802 D 1 HETATM 16 C C17 1XK . . . V 3 27.213 37.217 15.032 1 85.95 ? C17 1XK 802 D 1 HETATM 17 C C18 1XK . . . V 3 28.282 28.057 18.869 1 74.77 ? C18 1XK 802 D 1 HETATM 18 C C19 1XK . . . V 3 28.311 26.437 19.204 1 77.72 ? C19 1XK 802 D 1 HETATM 19 C C20 1XK . . . V 3 28.818 26.391 20.433 1 76.74 ? C20 1XK 802 D 1 HETATM 20 C C21 1XK . . . V 3 27.698 26.728 21.453 1 81.23 ? C21 1XK 802 D 1 HETATM 21 C C22 1XK . . . V 3 29.489 24.983 20.684 1 72.36 ? C22 1XK 802 D 1 HETATM 22 C C23 1XK . . . V 3 30.619 24.246 20.991 1 77.27 ? C23 1XK 802 D 1 HETATM 23 C C24 1XK . . . V 3 29.409 23.601 20.746 1 77.31 ? C24 1XK 802 D 1 HETATM 24 C C25 1XK . . . V 3 29.963 27.462 20.387 1 71.77 ? C25 1XK 802 D 1 HETATM 25 C C5 1XK . . . V 3 30.759 30.858 16.866 1 74.06 ? C5 1XK 802 D 1 HETATM 26 C C6 1XK . . . V 3 30.307 31.43 15.517 1 74.22 ? C6 1XK 802 D 1 HETATM 27 C C7 1XK . . . V 3 30.901 32.322 13.187 1 71.98 ? C7 1XK 802 D 1 HETATM 28 C C8 1XK . . . V 3 30.56 33.828 13.335 1 61.23 ? C8 1XK 802 D 1 HETATM 29 C C9 1XK . . . V 3 31.517 34.797 13.042 1 63.84 ? C9 1XK 802 D 1 HETATM 30 F F 1XK . . . V 3 32.164 37.084 12.886 1 69.52 ? F 1XK 802 D 1 HETATM 31 N N2 1XK . . . V 3 25.418 35.996 14.832 1 86.15 ? N2 1XK 802 D 1 HETATM 32 N N3 1XK . . . V 3 25.915 37.159 15.277 1 88.78 ? N3 1XK 802 D 1 HETATM 33 N N4 1XK . . . V 3 29.366 28.6 19.454 1 75.52 ? N4 1XK 802 D 1 HETATM 34 O O1 1XK . . . V 3 28.221 26.726 22.762 1 83.91 ? O1 1XK 802 D 1 HETATM 35 O O2 1XK . . . V 3 30.319 27.912 21.522 1 65.07 ? O2 1XK 802 D 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #