data_7F9Q # _model_server_result.job_id SoDKb5iZlru92IvdnSWQNQ _model_server_result.datetime_utc '2024-11-24 08:28:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f9q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":901}' # _entry.id 7F9Q # _exptl.entry_id 7F9Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.531 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(3S)-3-cyclopropyl-3-(hydroxymethyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F9Q _cell.length_a 76.479 _cell.length_b 76.479 _cell.length_c 407.543 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F9Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 176 A ASP 506 1_555 E CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc2 A OE2 GLU 304 A GLU 634 1_555 E CA CA . A CA 903 7_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc3 E CA CA . A CA 903 1_555 H O HOH . A HOH 1009 7_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? # _chem_comp.formula 'C26 H28 F N5 O3' _chem_comp.formula_weight 477.531 _chem_comp.id 1XK _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(3S)-3-cyclopropyl-3-(hydroxymethyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C23 1XK sing 1 n n C24 C22 1XK sing 2 n n C23 C22 1XK sing 3 n n C22 C20 1XK sing 4 n n O1 C21 1XK sing 5 n n O2 C25 1XK doub 6 n n C20 C25 1XK sing 7 n n C20 C21 1XK sing 8 n n C20 C19 1XK sing 9 n n C25 N4 1XK sing 10 n n C C1 1XK sing 11 n n C2 C1 1XK doub 12 n y C2 C3 1XK sing 13 n y C19 C18 1XK sing 14 n n N4 C3 1XK sing 15 n n N4 C18 1XK sing 16 n n C1 N 1XK sing 17 n y C3 C4 1XK doub 18 n y N C5 1XK doub 19 n y C4 C5 1XK sing 20 n y C5 C6 1XK sing 21 n n C6 N1 1XK sing 22 n n C6 O 1XK doub 23 n n N1 C7 1XK sing 24 n n C7 C8 1XK sing 25 n n C8 C9 1XK doub 26 n y C8 C13 1XK sing 27 n y C9 C10 1XK sing 28 n y C13 C12 1XK doub 29 n y C10 F 1XK sing 30 n n C10 C11 1XK doub 31 n y C12 C11 1XK sing 32 n y C12 C14 1XK sing 33 n n C14 C15 1XK sing 34 n y C14 C17 1XK doub 35 n y C15 N2 1XK doub 36 n y C17 N3 1XK sing 37 n y N2 N3 1XK sing 38 n y N3 C16 1XK sing 39 n n C4 H1 1XK sing 40 n n C H2 1XK sing 41 n n C H3 1XK sing 42 n n C H4 1XK sing 43 n n N1 H5 1XK sing 44 n n C2 H6 1XK sing 45 n n C11 H7 1XK sing 46 n n C13 H8 1XK sing 47 n n C15 H9 1XK sing 48 n n C16 H10 1XK sing 49 n n C16 H11 1XK sing 50 n n C16 H12 1XK sing 51 n n C17 H13 1XK sing 52 n n C18 H14 1XK sing 53 n n C18 H15 1XK sing 54 n n C19 H16 1XK sing 55 n n C19 H17 1XK sing 56 n n C21 H18 1XK sing 57 n n C21 H19 1XK sing 58 n n C22 H20 1XK sing 59 n n C23 H21 1XK sing 60 n n C23 H22 1XK sing 61 n n C24 H23 1XK sing 62 n n C24 H24 1XK sing 63 n n C7 H25 1XK sing 64 n n C7 H26 1XK sing 65 n n C9 H27 1XK sing 66 n n O1 H28 1XK sing 67 n n # _atom_sites.entry_id 7F9Q _atom_sites.fract_transf_matrix[1][1] 0.013075 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013075 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1XK A 1 901 901 1XK L97 . D 3 9SF A 1 902 1001 9SF 9SF . E 4 CA A 1 903 1101 CA CA . F 2 1XK B 1 901 901 1XK L97 . G 3 9SF B 1 902 1001 9SF 9SF . H 5 HOH A 1 1001 12 HOH HOH . H 5 HOH A 2 1002 6 HOH HOH . H 5 HOH A 3 1003 9 HOH HOH . H 5 HOH A 4 1004 5 HOH HOH . H 5 HOH A 5 1005 13 HOH HOH . H 5 HOH A 6 1006 1 HOH HOH . H 5 HOH A 7 1007 3 HOH HOH . H 5 HOH A 8 1008 8 HOH HOH . H 5 HOH A 9 1009 16 HOH HOH . H 5 HOH A 10 1010 15 HOH HOH . H 5 HOH A 11 1011 4 HOH HOH . H 5 HOH A 12 1012 14 HOH HOH . H 5 HOH A 13 1013 18 HOH HOH . H 5 HOH A 14 1014 11 HOH HOH . H 5 HOH A 15 1015 2 HOH HOH . I 5 HOH B 1 1001 10 HOH HOH . I 5 HOH B 2 1002 7 HOH HOH . I 5 HOH B 3 1003 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 1XK . . . F 2 28.783 -20.706 -42.789 0.88 48.07 ? C4 1XK 901 B 1 HETATM 2 C C 1XK . . . F 2 27.175 -23.804 -40.393 0.88 42.21 ? C 1XK 901 B 1 HETATM 3 N N 1XK . . . F 2 27.21 -22.479 -42.419 0.88 62.01 ? N 1XK 901 B 1 HETATM 4 N N1 1XK . . . F 2 25.909 -21.865 -44.735 0.88 58.51 ? N1 1XK 901 B 1 HETATM 5 C C3 1XK . . . F 2 29.32 -20.896 -41.525 0.88 43.29 ? C3 1XK 901 B 1 HETATM 6 C C2 1XK . . . F 2 28.815 -21.917 -40.726 0.88 43.38 ? C2 1XK 901 B 1 HETATM 7 C C1 1XK . . . F 2 27.758 -22.689 -41.205 0.88 54.73 ? C1 1XK 901 B 1 HETATM 8 O O 1XK . . . F 2 27.478 -20.358 -45.261 0.88 71.41 ? O 1XK 901 B 1 HETATM 9 C C10 1XK . . . F 2 24.57 -24.783 -47.935 0.88 63.9 ? C10 1XK 901 B 1 HETATM 10 C C11 1XK . . . F 2 25.682 -24.908 -48.727 0.88 65.73 ? C11 1XK 901 B 1 HETATM 11 C C12 1XK . . . F 2 26.663 -23.924 -48.642 0.88 66.7 ? C12 1XK 901 B 1 HETATM 12 C C13 1XK . . . F 2 26.492 -22.863 -47.759 0.88 68.09 ? C13 1XK 901 B 1 HETATM 13 C C14 1XK . . . F 2 27.851 -23.98 -49.536 0.88 76.8 ? C14 1XK 901 B 1 HETATM 14 C C15 1XK . . . F 2 28.877 -23.048 -49.718 0.88 78.13 ? C15 1XK 901 B 1 HETATM 15 C C16 1XK . . . F 2 30.056 -25.418 -52.004 0.88 89.56 ? C16 1XK 901 B 1 HETATM 16 C C17 1XK . . . F 2 28.163 -24.991 -50.415 0.88 82.08 ? C17 1XK 901 B 1 HETATM 17 C C18 1XK . . . F 2 30.812 -18.952 -41.927 0.88 41.9 ? C18 1XK 901 B 1 HETATM 18 C C19 1XK . . . F 2 31.474 -17.97 -40.975 0.88 41.27 ? C19 1XK 901 B 1 HETATM 19 C C20 1XK . . . F 2 31.92 -18.829 -39.776 0.88 50.72 ? C20 1XK 901 B 1 HETATM 20 C C21 1XK . . . F 2 33.421 -19.088 -39.869 0.88 63.25 ? C21 1XK 901 B 1 HETATM 21 C C22 1XK . . . F 2 31.552 -18.246 -38.447 0.88 55.7 ? C22 1XK 901 B 1 HETATM 22 C C23 1XK . . . F 2 30.351 -17.355 -38.269 0.88 68.1 ? C23 1XK 901 B 1 HETATM 23 C C24 1XK . . . F 2 31.731 -16.775 -38.238 0.88 59.94 ? C24 1XK 901 B 1 HETATM 24 C C25 1XK . . . F 2 31.032 -20.079 -39.893 0.88 52.06 ? C25 1XK 901 B 1 HETATM 25 C C5 1XK . . . F 2 27.719 -21.503 -43.184 0.88 51.61 ? C5 1XK 901 B 1 HETATM 26 C C6 1XK . . . F 2 27.035 -21.2 -44.49 0.88 56.26 ? C6 1XK 901 B 1 HETATM 27 C C7 1XK . . . F 2 25.181 -21.643 -45.976 0.88 52.93 ? C7 1XK 901 B 1 HETATM 28 C C8 1XK . . . F 2 25.354 -22.774 -46.961 0.88 63.28 ? C8 1XK 901 B 1 HETATM 29 C C9 1XK . . . F 2 24.377 -23.754 -47.062 0.88 56.96 ? C9 1XK 901 B 1 HETATM 30 F F 1XK . . . F 2 23.602 -25.732 -48.021 0.88 73.88 ? F 1XK 901 B 1 HETATM 31 N N2 1XK . . . F 2 29.758 -23.44 -50.62 0.88 69.8 ? N2 1XK 901 B 1 HETATM 32 N N3 1XK . . . F 2 29.303 -24.645 -51.031 0.88 78.18 ? N3 1XK 901 B 1 HETATM 33 N N4 1XK . . . F 2 30.292 -19.981 -41.031 0.88 45.72 ? N4 1XK 901 B 1 HETATM 34 O O1 1XK . . . F 2 33.925 -19.367 -38.572 0.88 80.76 ? O1 1XK 901 B 1 HETATM 35 O O2 1XK . . . F 2 31 -21.009 -39.111 0.88 54.4 ? O2 1XK 901 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #