data_7F9Q # _model_server_result.job_id owEZ1oGb39M8OEgwN5dIMg _model_server_result.datetime_utc '2024-11-28 02:00:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f9q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":902}' # _entry.id 7F9Q # _exptl.entry_id 7F9Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.34 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7F9Q _cell.length_a 76.479 _cell.length_b 76.479 _cell.length_c 407.543 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F9Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 176 A ASP 506 1_555 E CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc2 A OE2 GLU 304 A GLU 634 1_555 E CA CA . A CA 903 7_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc3 E CA CA . A CA 903 1_555 H O HOH . A HOH 1009 7_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? # _chem_comp.formula 'C16 H19 N3 O3' _chem_comp.formula_weight 301.34 _chem_comp.id 9SF _chem_comp.mon_nstd_flag . _chem_comp.name 3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4' C5' 9SF sing 68 n n C4' C39 9SF sing 69 n n C5' C6' 9SF sing 70 n n O7' C39 9SF sing 71 n n C39 C2' 9SF sing 72 n n C6' N1' 9SF sing 73 n n C2' N1' 9SF sing 74 n n C2' C3' 9SF sing 75 n n C3' C21 9SF sing 76 n n C21 O4' 9SF doub 77 n n C21 C1' 9SF sing 78 n n C1' N3 9SF sing 79 n n N3 C2 9SF sing 80 n n N3 C4 9SF sing 81 n n O11 C4 9SF doub 82 n n C2 N1 9SF doub 83 n n C4 C10 9SF sing 84 n n N1 C9 9SF sing 85 n n C10 C9 9SF doub 86 n y C10 C5 9SF sing 87 n y C9 C8 9SF sing 88 n y C5 C6 9SF doub 89 n y C8 C7 9SF doub 90 n y C6 C7 9SF sing 91 n y C2 H1 9SF sing 92 n n C5 H2 9SF sing 93 n n C6 H3 9SF sing 94 n n C7 H4 9SF sing 95 n n C8 H5 9SF sing 96 n n C1' H6 9SF sing 97 n n C1' H7 9SF sing 98 n n C2' H8 9SF sing 99 n n C3' H9 9SF sing 100 n n C3' H10 9SF sing 101 n n C39 H11 9SF sing 102 n n C4' H12 9SF sing 103 n n C4' H13 9SF sing 104 n n C5' H14 9SF sing 105 n n C5' H15 9SF sing 106 n n C6' H16 9SF sing 107 n n C6' H17 9SF sing 108 n n N1' H18 9SF sing 109 n n O7' H20 9SF sing 110 n n # _atom_sites.entry_id 7F9Q _atom_sites.fract_transf_matrix[1][1] 0.013075 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013075 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1XK A 1 901 901 1XK L97 . D 3 9SF A 1 902 1001 9SF 9SF . E 4 CA A 1 903 1101 CA CA . F 2 1XK B 1 901 901 1XK L97 . G 3 9SF B 1 902 1001 9SF 9SF . H 5 HOH A 1 1001 12 HOH HOH . H 5 HOH A 2 1002 6 HOH HOH . H 5 HOH A 3 1003 9 HOH HOH . H 5 HOH A 4 1004 5 HOH HOH . H 5 HOH A 5 1005 13 HOH HOH . H 5 HOH A 6 1006 1 HOH HOH . H 5 HOH A 7 1007 3 HOH HOH . H 5 HOH A 8 1008 8 HOH HOH . H 5 HOH A 9 1009 16 HOH HOH . H 5 HOH A 10 1010 15 HOH HOH . H 5 HOH A 11 1011 4 HOH HOH . H 5 HOH A 12 1012 14 HOH HOH . H 5 HOH A 13 1013 18 HOH HOH . H 5 HOH A 14 1014 11 HOH HOH . H 5 HOH A 15 1015 2 HOH HOH . I 5 HOH B 1 1001 10 HOH HOH . I 5 HOH B 2 1002 7 HOH HOH . I 5 HOH B 3 1003 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 9SF . . . G 3 27.033 -13.621 -44.842 0.9 61.37 ? N1 9SF 902 B 1 HETATM 2 C C2 9SF . . . G 3 28.014 -13.22 -44.118 0.9 68.07 ? C2 9SF 902 B 1 HETATM 3 C C5 9SF . . . G 3 24.923 -10.575 -44.646 0.9 67.25 ? C5 9SF 902 B 1 HETATM 4 C C6 9SF . . . G 3 23.85 -10.979 -45.423 0.9 63.4 ? C6 9SF 902 B 1 HETATM 5 C C7 9SF . . . G 3 23.837 -12.235 -45.996 0.9 64.52 ? C7 9SF 902 B 1 HETATM 6 C C8 9SF . . . G 3 24.896 -13.107 -45.8 0.9 65.31 ? C8 9SF 902 B 1 HETATM 7 C C10 9SF . . . G 3 25.992 -11.445 -44.443 0.9 70.81 ? C10 9SF 902 B 1 HETATM 8 C C1' 9SF . . . G 3 29.307 -11.685 -42.709 0.9 74.89 ? C1' 9SF 902 B 1 HETATM 9 C C2' 9SF . . . G 3 29.778 -11.033 -38.856 0.9 77.85 ? C2' 9SF 902 B 1 HETATM 10 C C21 9SF . . . G 3 29.019 -11.659 -41.211 0.9 79.11 ? C21 9SF 902 B 1 HETATM 11 C C3' 9SF . . . G 3 30.024 -10.915 -40.366 0.9 76.48 ? C3' 9SF 902 B 1 HETATM 12 C C39 9SF . . . G 3 29.865 -12.472 -38.356 0.9 73.39 ? C39 9SF 902 B 1 HETATM 13 C C4 9SF . . . G 3 27.136 -11.032 -43.621 0.9 80.05 ? C4 9SF 902 B 1 HETATM 14 C C4' 9SF . . . G 3 29.817 -12.517 -36.839 0.9 62.09 ? C4' 9SF 902 B 1 HETATM 15 C C5' 9SF . . . G 3 28.977 -11.37 -36.287 0.9 66.01 ? C5' 9SF 902 B 1 HETATM 16 C C6' 9SF . . . G 3 27.9 -10.992 -37.266 0.9 69.7 ? C6' 9SF 902 B 1 HETATM 17 C C9 9SF . . . G 3 25.985 -12.719 -45.019 0.9 64.12 ? C9 9SF 902 B 1 HETATM 18 N N1' 9SF . . . G 3 28.472 -10.459 -38.509 0.9 75.62 ? N1' 9SF 902 B 1 HETATM 19 N N3 9SF . . . G 3 28.126 -12 -43.507 0.9 74.14 ? N3 9SF 902 B 1 HETATM 20 O O11 9SF . . . G 3 27.244 -9.949 -43.074 0.9 86.71 ? O11 9SF 902 B 1 HETATM 21 O O4' 9SF . . . G 3 28.047 -12.199 -40.73 0.9 87.35 ? O4' 9SF 902 B 1 HETATM 22 O O7' 9SF . . . G 3 31.074 -13.069 -38.822 0.9 79.68 ? O7' 9SF 902 B 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 407 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 22 #