data_7F9S # _model_server_result.job_id 8lDcnK-9WWXImivxbUUk4A _model_server_result.datetime_utc '2024-12-12 16:28:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7f9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 7F9S # _exptl.entry_id 7F9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.34 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.39 _cell.angle_gamma 90 _cell.entry_id 7F9S _cell.length_a 116.51 _cell.length_b 73.65 _cell.length_c 75.03 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7F9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 188 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 518 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id S2 _struct_conn.ptnr2_label_comp_id BME _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BME _struct_conn.ptnr2_auth_seq_id 905 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.054 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H19 N3 O3' _chem_comp.formula_weight 301.34 _chem_comp.id 9SF _chem_comp.mon_nstd_flag . _chem_comp.name 3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4' C5' 9SF sing 68 n n C4' C39 9SF sing 69 n n C5' C6' 9SF sing 70 n n O7' C39 9SF sing 71 n n C39 C2' 9SF sing 72 n n C6' N1' 9SF sing 73 n n C2' N1' 9SF sing 74 n n C2' C3' 9SF sing 75 n n C3' C21 9SF sing 76 n n C21 O4' 9SF doub 77 n n C21 C1' 9SF sing 78 n n C1' N3 9SF sing 79 n n N3 C2 9SF sing 80 n n N3 C4 9SF sing 81 n n O11 C4 9SF doub 82 n n C2 N1 9SF doub 83 n n C4 C10 9SF sing 84 n n N1 C9 9SF sing 85 n n C10 C9 9SF doub 86 n y C10 C5 9SF sing 87 n y C9 C8 9SF sing 88 n y C5 C6 9SF doub 89 n y C8 C7 9SF doub 90 n y C6 C7 9SF sing 91 n y C2 H1 9SF sing 92 n n C5 H2 9SF sing 93 n n C6 H3 9SF sing 94 n n C7 H4 9SF sing 95 n n C8 H5 9SF sing 96 n n C1' H6 9SF sing 97 n n C1' H7 9SF sing 98 n n C2' H8 9SF sing 99 n n C3' H9 9SF sing 100 n n C3' H10 9SF sing 101 n n C39 H11 9SF sing 102 n n C4' H12 9SF sing 103 n n C4' H13 9SF sing 104 n n C5' H14 9SF sing 105 n n C5' H15 9SF sing 106 n n C6' H16 9SF sing 107 n n C6' H17 9SF sing 108 n n N1' H18 9SF sing 109 n n O7' H20 9SF sing 110 n n # _atom_sites.entry_id 7F9S _atom_sites.fract_transf_matrix[1][1] 0.008583 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003362 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1TI A 1 901 901 1TI T35 . C 3 9SF A 1 902 902 9SF 9SF . D 4 BCN A 1 903 903 BCN BCN . E 5 GOL A 1 904 904 GOL GOL . F 6 BME A 1 905 905 BME BME . G 7 FMT A 1 906 906 FMT FMT . H 7 FMT A 1 907 907 FMT FMT . I 7 FMT A 1 908 908 FMT FMT . J 8 HOH A 1 1001 161 HOH HOH . J 8 HOH A 2 1002 105 HOH HOH . J 8 HOH A 3 1003 84 HOH HOH . J 8 HOH A 4 1004 166 HOH HOH . J 8 HOH A 5 1005 15 HOH HOH . J 8 HOH A 6 1006 107 HOH HOH . J 8 HOH A 7 1007 191 HOH HOH . J 8 HOH A 8 1008 73 HOH HOH . J 8 HOH A 9 1009 34 HOH HOH . J 8 HOH A 10 1010 148 HOH HOH . J 8 HOH A 11 1011 63 HOH HOH . J 8 HOH A 12 1012 87 HOH HOH . J 8 HOH A 13 1013 181 HOH HOH . J 8 HOH A 14 1014 50 HOH HOH . J 8 HOH A 15 1015 59 HOH HOH . J 8 HOH A 16 1016 80 HOH HOH . J 8 HOH A 17 1017 49 HOH HOH . J 8 HOH A 18 1018 112 HOH HOH . J 8 HOH A 19 1019 195 HOH HOH . J 8 HOH A 20 1020 54 HOH HOH . J 8 HOH A 21 1021 9 HOH HOH . J 8 HOH A 22 1022 18 HOH HOH . J 8 HOH A 23 1023 78 HOH HOH . J 8 HOH A 24 1024 192 HOH HOH . J 8 HOH A 25 1025 1 HOH HOH . J 8 HOH A 26 1026 108 HOH HOH . J 8 HOH A 27 1027 21 HOH HOH . J 8 HOH A 28 1028 176 HOH HOH . J 8 HOH A 29 1029 24 HOH HOH . J 8 HOH A 30 1030 99 HOH HOH . J 8 HOH A 31 1031 28 HOH HOH . J 8 HOH A 32 1032 16 HOH HOH . J 8 HOH A 33 1033 43 HOH HOH . J 8 HOH A 34 1034 139 HOH HOH . J 8 HOH A 35 1035 103 HOH HOH . J 8 HOH A 36 1036 72 HOH HOH . J 8 HOH A 37 1037 125 HOH HOH . J 8 HOH A 38 1038 86 HOH HOH . J 8 HOH A 39 1039 91 HOH HOH . J 8 HOH A 40 1040 186 HOH HOH . J 8 HOH A 41 1041 71 HOH HOH . J 8 HOH A 42 1042 40 HOH HOH . J 8 HOH A 43 1043 53 HOH HOH . J 8 HOH A 44 1044 25 HOH HOH . J 8 HOH A 45 1045 106 HOH HOH . J 8 HOH A 46 1046 6 HOH HOH . J 8 HOH A 47 1047 175 HOH HOH . J 8 HOH A 48 1048 41 HOH HOH . J 8 HOH A 49 1049 111 HOH HOH . J 8 HOH A 50 1050 74 HOH HOH . J 8 HOH A 51 1051 26 HOH HOH . J 8 HOH A 52 1052 57 HOH HOH . J 8 HOH A 53 1053 2 HOH HOH . J 8 HOH A 54 1054 46 HOH HOH . J 8 HOH A 55 1055 101 HOH HOH . J 8 HOH A 56 1056 115 HOH HOH . J 8 HOH A 57 1057 32 HOH HOH . J 8 HOH A 58 1058 144 HOH HOH . J 8 HOH A 59 1059 180 HOH HOH . J 8 HOH A 60 1060 132 HOH HOH . J 8 HOH A 61 1061 3 HOH HOH . J 8 HOH A 62 1062 51 HOH HOH . J 8 HOH A 63 1063 37 HOH HOH . J 8 HOH A 64 1064 114 HOH HOH . J 8 HOH A 65 1065 88 HOH HOH . J 8 HOH A 66 1066 31 HOH HOH . J 8 HOH A 67 1067 124 HOH HOH . J 8 HOH A 68 1068 155 HOH HOH . J 8 HOH A 69 1069 208 HOH HOH . J 8 HOH A 70 1070 134 HOH HOH . J 8 HOH A 71 1071 12 HOH HOH . J 8 HOH A 72 1072 95 HOH HOH . J 8 HOH A 73 1073 127 HOH HOH . J 8 HOH A 74 1074 39 HOH HOH . J 8 HOH A 75 1075 98 HOH HOH . J 8 HOH A 76 1076 33 HOH HOH . J 8 HOH A 77 1077 69 HOH HOH . J 8 HOH A 78 1078 158 HOH HOH . J 8 HOH A 79 1079 5 HOH HOH . J 8 HOH A 80 1080 156 HOH HOH . J 8 HOH A 81 1081 70 HOH HOH . J 8 HOH A 82 1082 109 HOH HOH . J 8 HOH A 83 1083 190 HOH HOH . J 8 HOH A 84 1084 52 HOH HOH . J 8 HOH A 85 1085 82 HOH HOH . J 8 HOH A 86 1086 29 HOH HOH . J 8 HOH A 87 1087 65 HOH HOH . J 8 HOH A 88 1088 100 HOH HOH . J 8 HOH A 89 1089 83 HOH HOH . J 8 HOH A 90 1090 48 HOH HOH . J 8 HOH A 91 1091 141 HOH HOH . J 8 HOH A 92 1092 64 HOH HOH . J 8 HOH A 93 1093 4 HOH HOH . J 8 HOH A 94 1094 150 HOH HOH . J 8 HOH A 95 1095 36 HOH HOH . J 8 HOH A 96 1096 182 HOH HOH . J 8 HOH A 97 1097 137 HOH HOH . J 8 HOH A 98 1098 20 HOH HOH . J 8 HOH A 99 1099 11 HOH HOH . J 8 HOH A 100 1100 58 HOH HOH . J 8 HOH A 101 1101 152 HOH HOH . J 8 HOH A 102 1102 75 HOH HOH . J 8 HOH A 103 1103 120 HOH HOH . J 8 HOH A 104 1104 77 HOH HOH . J 8 HOH A 105 1105 138 HOH HOH . J 8 HOH A 106 1106 76 HOH HOH . J 8 HOH A 107 1107 204 HOH HOH . J 8 HOH A 108 1108 45 HOH HOH . J 8 HOH A 109 1109 56 HOH HOH . J 8 HOH A 110 1110 93 HOH HOH . J 8 HOH A 111 1111 149 HOH HOH . J 8 HOH A 112 1112 19 HOH HOH . J 8 HOH A 113 1113 92 HOH HOH . J 8 HOH A 114 1114 79 HOH HOH . J 8 HOH A 115 1115 35 HOH HOH . J 8 HOH A 116 1116 122 HOH HOH . J 8 HOH A 117 1117 174 HOH HOH . J 8 HOH A 118 1118 135 HOH HOH . J 8 HOH A 119 1119 7 HOH HOH . J 8 HOH A 120 1120 17 HOH HOH . J 8 HOH A 121 1121 113 HOH HOH . J 8 HOH A 122 1122 23 HOH HOH . J 8 HOH A 123 1123 164 HOH HOH . J 8 HOH A 124 1124 185 HOH HOH . J 8 HOH A 125 1125 14 HOH HOH . J 8 HOH A 126 1126 209 HOH HOH . J 8 HOH A 127 1127 201 HOH HOH . J 8 HOH A 128 1128 44 HOH HOH . J 8 HOH A 129 1129 62 HOH HOH . J 8 HOH A 130 1130 27 HOH HOH . J 8 HOH A 131 1131 196 HOH HOH . J 8 HOH A 132 1132 55 HOH HOH . J 8 HOH A 133 1133 10 HOH HOH . J 8 HOH A 134 1134 193 HOH HOH . J 8 HOH A 135 1135 8 HOH HOH . J 8 HOH A 136 1136 13 HOH HOH . J 8 HOH A 137 1137 165 HOH HOH . J 8 HOH A 138 1138 128 HOH HOH . J 8 HOH A 139 1139 102 HOH HOH . J 8 HOH A 140 1140 90 HOH HOH . J 8 HOH A 141 1141 60 HOH HOH . J 8 HOH A 142 1142 110 HOH HOH . J 8 HOH A 143 1143 130 HOH HOH . J 8 HOH A 144 1144 177 HOH HOH . J 8 HOH A 145 1145 154 HOH HOH . J 8 HOH A 146 1146 22 HOH HOH . J 8 HOH A 147 1147 131 HOH HOH . J 8 HOH A 148 1148 119 HOH HOH . J 8 HOH A 149 1149 146 HOH HOH . J 8 HOH A 150 1150 143 HOH HOH . J 8 HOH A 151 1151 67 HOH HOH . J 8 HOH A 152 1152 172 HOH HOH . J 8 HOH A 153 1153 85 HOH HOH . J 8 HOH A 154 1154 187 HOH HOH . J 8 HOH A 155 1155 188 HOH HOH . J 8 HOH A 156 1156 66 HOH HOH . J 8 HOH A 157 1157 89 HOH HOH . J 8 HOH A 158 1158 68 HOH HOH . J 8 HOH A 159 1159 179 HOH HOH . J 8 HOH A 160 1160 159 HOH HOH . J 8 HOH A 161 1161 42 HOH HOH . J 8 HOH A 162 1162 61 HOH HOH . J 8 HOH A 163 1163 142 HOH HOH . J 8 HOH A 164 1164 145 HOH HOH . J 8 HOH A 165 1165 81 HOH HOH . J 8 HOH A 166 1166 207 HOH HOH . J 8 HOH A 167 1167 167 HOH HOH . J 8 HOH A 168 1168 157 HOH HOH . J 8 HOH A 169 1169 183 HOH HOH . J 8 HOH A 170 1170 136 HOH HOH . J 8 HOH A 171 1171 178 HOH HOH . J 8 HOH A 172 1172 194 HOH HOH . J 8 HOH A 173 1173 169 HOH HOH . J 8 HOH A 174 1174 96 HOH HOH . J 8 HOH A 175 1175 197 HOH HOH . J 8 HOH A 176 1176 118 HOH HOH . J 8 HOH A 177 1177 121 HOH HOH . J 8 HOH A 178 1178 47 HOH HOH . J 8 HOH A 179 1179 162 HOH HOH . J 8 HOH A 180 1180 147 HOH HOH . J 8 HOH A 181 1181 153 HOH HOH . J 8 HOH A 182 1182 200 HOH HOH . J 8 HOH A 183 1183 206 HOH HOH . J 8 HOH A 184 1184 168 HOH HOH . J 8 HOH A 185 1185 189 HOH HOH . J 8 HOH A 186 1186 170 HOH HOH . J 8 HOH A 187 1187 116 HOH HOH . J 8 HOH A 188 1188 202 HOH HOH . J 8 HOH A 189 1189 30 HOH HOH . J 8 HOH A 190 1190 163 HOH HOH . J 8 HOH A 191 1191 173 HOH HOH . J 8 HOH A 192 1192 171 HOH HOH . J 8 HOH A 193 1193 160 HOH HOH . J 8 HOH A 194 1194 198 HOH HOH . J 8 HOH A 195 1195 97 HOH HOH . J 8 HOH A 196 1196 126 HOH HOH . J 8 HOH A 197 1197 184 HOH HOH . J 8 HOH A 198 1198 123 HOH HOH . J 8 HOH A 199 1199 38 HOH HOH . J 8 HOH A 200 1200 205 HOH HOH . J 8 HOH A 201 1201 94 HOH HOH . J 8 HOH A 202 1202 104 HOH HOH . J 8 HOH A 203 1203 140 HOH HOH . J 8 HOH A 204 1204 133 HOH HOH . J 8 HOH A 205 1205 151 HOH HOH . J 8 HOH A 206 1206 117 HOH HOH . J 8 HOH A 207 1207 203 HOH HOH . J 8 HOH A 208 1208 199 HOH HOH . J 8 HOH A 209 1209 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 9SF . . . C 3 15.828 -14.662 -0.434 0.93 43.41 ? N1 9SF 902 A 1 HETATM 2 C C2 9SF . . . C 3 16.461 -13.73 -1.05 0.93 44.67 ? C2 9SF 902 A 1 HETATM 3 C C5 9SF . . . C 3 14.585 -16.529 -3.392 0.93 48.7 ? C5 9SF 902 A 1 HETATM 4 C C6 9SF . . . C 3 13.929 -17.571 -2.761 0.93 49.8 ? C6 9SF 902 A 1 HETATM 5 C C7 9SF . . . C 3 13.895 -17.638 -1.38 0.93 47.76 ? C7 9SF 902 A 1 HETATM 6 C C8 9SF . . . C 3 14.512 -16.661 -0.614 0.93 46.46 ? C8 9SF 902 A 1 HETATM 7 C C10 9SF . . . C 3 15.218 -15.547 -2.632 0.93 43.07 ? C10 9SF 902 A 1 HETATM 8 C C1' 9SF . . . C 3 17.294 -12.455 -2.977 0.93 43.23 ? C1' 9SF 902 A 1 HETATM 9 C C2' 9SF . . . C 3 16.337 -8.889 -4.372 0.93 39.1 ? C2' 9SF 902 A 1 HETATM 10 C C21 9SF . . . C 3 16.392 -11.273 -3.361 0.93 45.83 ? C21 9SF 902 A 1 HETATM 11 C C3' 9SF . . . C 3 17.04 -10.249 -4.265 0.93 41.83 ? C3' 9SF 902 A 1 HETATM 12 C C39 9SF . . . C 3 16.145 -8.194 -3.026 0.93 42.64 ? C39 9SF 902 A 1 HETATM 13 C C4 9SF . . . C 3 15.945 -14.462 -3.29 0.93 45.29 ? C4 9SF 902 A 1 HETATM 14 C C4' 9SF . . . C 3 15.697 -6.757 -3.228 0.93 38.51 ? C4' 9SF 902 A 1 HETATM 15 C C5' 9SF . . . C 3 14.365 -6.756 -3.979 0.93 38.39 ? C5' 9SF 902 A 1 HETATM 16 C C6' 9SF . . . C 3 14.464 -7.614 -5.267 0.93 37.72 ? C6' 9SF 902 A 1 HETATM 17 C C9 9SF . . . C 3 15.184 -15.608 -1.234 0.93 46.97 ? C9 9SF 902 A 1 HETATM 18 N N1' 9SF . . . C 3 15.022 -8.954 -5.019 0.93 38.39 ? N1' 9SF 902 A 1 HETATM 19 N N3 9SF . . . C 3 16.555 -13.576 -2.411 0.93 46.47 ? N3 9SF 902 A 1 HETATM 20 O O11 9SF . . . C 3 16.005 -14.292 -4.497 0.93 46.96 ? O11 9SF 902 A 1 HETATM 21 O O4' 9SF . . . C 3 15.237 -11.194 -2.998 0.93 38 ? O4' 9SF 902 A 1 HETATM 22 O O7' 9SF . . . C 3 17.352 -8.278 -2.271 0.93 37.68 ? O7' 9SF 902 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 22 #