data_7FAM # _model_server_result.job_id A4EwT4cF7wurSc_PKcaiaA _model_server_result.datetime_utc '2024-10-15 13:14:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fam # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 7FAM # _exptl.entry_id 7FAM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.531 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 4-[(3S)-3-cyclopropyl-3-(hydroxymethyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.24 _cell.angle_gamma 90 _cell.entry_id 7FAM _cell.length_a 115.488 _cell.length_b 74.039 _cell.length_c 74.854 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FAM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H28 F N5 O3' _chem_comp.formula_weight 477.531 _chem_comp.id 1XK _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(3S)-3-cyclopropyl-3-(hydroxymethyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C23 1XK sing 1 n n C24 C22 1XK sing 2 n n C23 C22 1XK sing 3 n n C22 C20 1XK sing 4 n n O1 C21 1XK sing 5 n n O2 C25 1XK doub 6 n n C20 C25 1XK sing 7 n n C20 C21 1XK sing 8 n n C20 C19 1XK sing 9 n n C25 N4 1XK sing 10 n n C C1 1XK sing 11 n n C2 C1 1XK doub 12 n y C2 C3 1XK sing 13 n y C19 C18 1XK sing 14 n n N4 C3 1XK sing 15 n n N4 C18 1XK sing 16 n n C1 N 1XK sing 17 n y C3 C4 1XK doub 18 n y N C5 1XK doub 19 n y C4 C5 1XK sing 20 n y C5 C6 1XK sing 21 n n C6 N1 1XK sing 22 n n C6 O 1XK doub 23 n n N1 C7 1XK sing 24 n n C7 C8 1XK sing 25 n n C8 C9 1XK doub 26 n y C8 C13 1XK sing 27 n y C9 C10 1XK sing 28 n y C13 C12 1XK doub 29 n y C10 F 1XK sing 30 n n C10 C11 1XK doub 31 n y C12 C11 1XK sing 32 n y C12 C14 1XK sing 33 n n C14 C15 1XK sing 34 n y C14 C17 1XK doub 35 n y C15 N2 1XK doub 36 n y C17 N3 1XK sing 37 n y N2 N3 1XK sing 38 n y N3 C16 1XK sing 39 n n C4 H1 1XK sing 40 n n C H2 1XK sing 41 n n C H3 1XK sing 42 n n C H4 1XK sing 43 n n N1 H5 1XK sing 44 n n C2 H6 1XK sing 45 n n C11 H7 1XK sing 46 n n C13 H8 1XK sing 47 n n C15 H9 1XK sing 48 n n C16 H10 1XK sing 49 n n C16 H11 1XK sing 50 n n C16 H12 1XK sing 51 n n C17 H13 1XK sing 52 n n C18 H14 1XK sing 53 n n C18 H15 1XK sing 54 n n C19 H16 1XK sing 55 n n C19 H17 1XK sing 56 n n C21 H18 1XK sing 57 n n C21 H19 1XK sing 58 n n C22 H20 1XK sing 59 n n C23 H21 1XK sing 60 n n C23 H22 1XK sing 61 n n C24 H23 1XK sing 62 n n C24 H24 1XK sing 63 n n C7 H25 1XK sing 64 n n C7 H26 1XK sing 65 n n C9 H27 1XK sing 66 n n O1 H28 1XK sing 67 n n # _atom_sites.entry_id 7FAM _atom_sites.fract_transf_matrix[1][1] 0.008659 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003365 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014333 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1XK A 1 901 901 1XK L97 . C 3 PRO A 1 902 851 PRO PRO . D 4 HOH A 1 1001 49 HOH HOH . D 4 HOH A 2 1002 29 HOH HOH . D 4 HOH A 3 1003 22 HOH HOH . D 4 HOH A 4 1004 28 HOH HOH . D 4 HOH A 5 1005 21 HOH HOH . D 4 HOH A 6 1006 20 HOH HOH . D 4 HOH A 7 1007 44 HOH HOH . D 4 HOH A 8 1008 1 HOH HOH . D 4 HOH A 9 1009 4 HOH HOH . D 4 HOH A 10 1010 39 HOH HOH . D 4 HOH A 11 1011 41 HOH HOH . D 4 HOH A 12 1012 50 HOH HOH . D 4 HOH A 13 1013 14 HOH HOH . D 4 HOH A 14 1014 34 HOH HOH . D 4 HOH A 15 1015 19 HOH HOH . D 4 HOH A 16 1016 17 HOH HOH . D 4 HOH A 17 1017 2 HOH HOH . D 4 HOH A 18 1018 35 HOH HOH . D 4 HOH A 19 1019 8 HOH HOH . D 4 HOH A 20 1020 31 HOH HOH . D 4 HOH A 21 1021 51 HOH HOH . D 4 HOH A 22 1022 5 HOH HOH . D 4 HOH A 23 1023 9 HOH HOH . D 4 HOH A 24 1024 32 HOH HOH . D 4 HOH A 25 1025 36 HOH HOH . D 4 HOH A 26 1026 33 HOH HOH . D 4 HOH A 27 1027 6 HOH HOH . D 4 HOH A 28 1028 10 HOH HOH . D 4 HOH A 29 1029 25 HOH HOH . D 4 HOH A 30 1030 43 HOH HOH . D 4 HOH A 31 1031 18 HOH HOH . D 4 HOH A 32 1032 15 HOH HOH . D 4 HOH A 33 1033 11 HOH HOH . D 4 HOH A 34 1034 27 HOH HOH . D 4 HOH A 35 1035 37 HOH HOH . D 4 HOH A 36 1036 7 HOH HOH . D 4 HOH A 37 1037 3 HOH HOH . D 4 HOH A 38 1038 23 HOH HOH . D 4 HOH A 39 1039 30 HOH HOH . D 4 HOH A 40 1040 46 HOH HOH . D 4 HOH A 41 1041 16 HOH HOH . D 4 HOH A 42 1042 12 HOH HOH . D 4 HOH A 43 1043 47 HOH HOH . D 4 HOH A 44 1044 24 HOH HOH . D 4 HOH A 45 1045 13 HOH HOH . D 4 HOH A 46 1046 38 HOH HOH . D 4 HOH A 47 1047 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 1XK . . . B 2 14.878 -10.558 5.78 1 52.52 ? C4 1XK 901 A 1 HETATM 2 C C 1XK . . . B 2 11.917 -8.45 7.953 1 43.73 ? C 1XK 901 A 1 HETATM 3 N N 1XK . . . B 2 12.98 -10.509 7.243 1 49.63 ? N 1XK 901 A 1 HETATM 4 N N1 1XK . . . B 2 12.944 -13.292 7.148 1 48.94 ? N1 1XK 901 A 1 HETATM 5 C C3 1XK . . . B 2 14.82 -9.189 5.631 1 53.93 ? C3 1XK 901 A 1 HETATM 6 C C2 1XK . . . B 2 13.842 -8.47 6.323 1 52.84 ? C2 1XK 901 A 1 HETATM 7 C C1 1XK . . . B 2 12.942 -9.165 7.128 1 48.17 ? C1 1XK 901 A 1 HETATM 8 O O 1XK . . . B 2 15.072 -13.253 6.439 1 45.24 ? O 1XK 901 A 1 HETATM 9 C C10 1XK . . . B 2 12.507 -15.955 10.744 1 51.15 ? C10 1XK 901 A 1 HETATM 10 C C11 1XK . . . B 2 13.79 -16.063 11.217 1 48.61 ? C11 1XK 901 A 1 HETATM 11 C C12 1XK . . . B 2 14.838 -15.783 10.348 1 49.68 ? C12 1XK 901 A 1 HETATM 12 C C13 1XK . . . B 2 14.561 -15.387 9.039 1 47.42 ? C13 1XK 901 A 1 HETATM 13 C C14 1XK . . . B 2 16.247 -15.963 10.805 1 55.57 ? C14 1XK 901 A 1 HETATM 14 C C15 1XK . . . B 2 17.452 -15.906 10.077 1 56.99 ? C15 1XK 901 A 1 HETATM 15 C C16 1XK . . . B 2 18.867 -16.739 13.177 1 61.74 ? C16 1XK 901 A 1 HETATM 16 C C17 1XK . . . B 2 16.651 -16.3 12.079 1 56.48 ? C17 1XK 901 A 1 HETATM 17 C C18 1XK . . . B 2 16.544 -9.46 3.871 1 52.92 ? C18 1XK 901 A 1 HETATM 18 C C19 1XK . . . B 2 16.693 -8.645 2.596 1 55.39 ? C19 1XK 901 A 1 HETATM 19 C C20 1XK . . . B 2 16.687 -7.184 3.091 1 55.96 ? C20 1XK 901 A 1 HETATM 20 C C21 1XK . . . B 2 18.133 -6.75 3.417 1 53.72 ? C21 1XK 901 A 1 HETATM 21 C C22 1XK . . . B 2 15.872 -6.284 2.143 1 58.29 ? C22 1XK 901 A 1 HETATM 22 C C23 1XK . . . B 2 15.21 -6.918 0.957 1 60.93 ? C23 1XK 901 A 1 HETATM 23 C C24 1XK . . . B 2 16.364 -5.992 0.753 1 60.28 ? C24 1XK 901 A 1 HETATM 24 C C25 1XK . . . B 2 15.846 -7.27 4.369 1 50.72 ? C25 1XK 901 A 1 HETATM 25 C C5 1XK . . . B 2 13.945 -11.17 6.585 1 51.03 ? C5 1XK 901 A 1 HETATM 26 C C6 1XK . . . B 2 14.043 -12.661 6.738 1 47.94 ? C6 1XK 901 A 1 HETATM 27 C C7 1XK . . . B 2 12.934 -14.748 7.215 1 51.27 ? C7 1XK 901 A 1 HETATM 28 C C8 1XK . . . B 2 13.243 -15.261 8.598 1 48.89 ? C8 1XK 901 A 1 HETATM 29 C C9 1XK . . . B 2 12.203 -15.565 9.467 1 48.23 ? C9 1XK 901 A 1 HETATM 30 F F 1XK . . . B 2 11.481 -16.263 11.585 1 56.03 ? F 1XK 901 A 1 HETATM 31 N N2 1XK . . . B 2 18.504 -16.181 10.833 1 56.13 ? N2 1XK 901 A 1 HETATM 32 N N3 1XK . . . B 2 17.987 -16.414 12.059 1 57.4 ? N3 1XK 901 A 1 HETATM 33 N N4 1XK . . . B 2 15.741 -8.579 4.732 1 52.64 ? N4 1XK 901 A 1 HETATM 34 O O1 1XK . . . B 2 18.449 -5.466 2.888 1 55.26 ? O1 1XK 901 A 1 HETATM 35 O O2 1XK . . . B 2 15.357 -6.334 4.967 1 46.71 ? O2 1XK 901 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #