data_7FD8 # _model_server_result.job_id n51S6JVPHcLbv1OXhgXcpA _model_server_result.datetime_utc '2025-01-09 21:10:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fd8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":903}' # _entry.id 7FD8 # _exptl.entry_id 7FD8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7FD8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 63 A CYS 57 1_555 A SG CYS 105 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 247 A CYS 241 1_555 A SG CYS 536 A CYS 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 282 A CYS 276 1_555 A SG CYS 284 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 371 A CYS 365 1_555 A SG CYS 387 A CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 425 A CYS 419 1_555 A SG CYS 432 A CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 517 A CYS 511 1_555 A SG CYS 537 A CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 521 A CYS 515 1_555 A SG CYS 540 A CYS 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 A SG CYS 543 A CYS 537 1_555 A SG CYS 555 A CYS 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 A SG CYS 558 A CYS 552 1_555 A SG CYS 571 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 A SG CYS 650 A CYS 644 1_555 A SG CYS 739 A CYS 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 B SG CYS 63 B CYS 57 1_555 B SG CYS 105 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 B SG CYS 247 B CYS 241 1_555 B SG CYS 536 B CYS 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf13 B SG CYS 282 B CYS 276 1_555 B SG CYS 284 B CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf14 B SG CYS 371 B CYS 365 1_555 B SG CYS 387 B CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 B SG CYS 425 B CYS 419 1_555 B SG CYS 432 B CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 B SG CYS 517 B CYS 511 1_555 B SG CYS 537 B CYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf17 B SG CYS 521 B CYS 515 1_555 B SG CYS 540 B CYS 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf18 B SG CYS 543 B CYS 537 1_555 B SG CYS 555 B CYS 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf19 B SG CYS 558 B CYS 552 1_555 B SG CYS 571 B CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf20 B SG CYS 650 B CYS 644 1_555 B SG CYS 739 B CYS 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 216 A ASN 210 1_555 C C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 B ND2 ASN 216 B ASN 210 1_555 F C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 424 n n CBA CAB Y01 sing 425 n n CBA CAN Y01 sing 426 n n CAN CAJ Y01 sing 427 n n CAJ CAO Y01 sing 428 n n CAO CBB Y01 sing 429 n n CBB CAC Y01 sing 430 n n CBB CBE Y01 sing 431 n n CBE CAP Y01 sing 432 n n CBE CBI Y01 sing 433 n n CAP CAQ Y01 sing 434 n n CAQ CBG Y01 sing 435 n n CBG CBI Y01 sing 436 n n CBG CBD Y01 sing 437 n n CBI CAE Y01 sing 438 n n CBI CAU Y01 sing 439 n n CAU CAS Y01 sing 440 n n CAS CBF Y01 sing 441 n n CBF CBD Y01 sing 442 n n CBF CBH Y01 sing 443 n n CBD CAK Y01 sing 444 n n CAK CAI Y01 sing 445 n n CAI CAZ Y01 doub 446 n n CAZ CAV Y01 sing 447 n n CAZ CBH Y01 sing 448 n n CAV CBC Y01 sing 449 n n CBH CAD Y01 sing 450 n n CBH CAT Y01 sing 451 n n CAT CAR Y01 sing 452 n n CAR CBC Y01 sing 453 n n CBC OAW Y01 sing 454 n n OAW CAY Y01 sing 455 n n CAY OAG Y01 doub 456 n n CAY CAM Y01 sing 457 n n CAM CAL Y01 sing 458 n n CAL CAX Y01 sing 459 n n CAX OAH Y01 sing 460 n n CAX OAF Y01 doub 461 n n CAA HAA1 Y01 sing 462 n n CAA HAA2 Y01 sing 463 n n CAA HAA3 Y01 sing 464 n n CBA HBA Y01 sing 465 n n CAB HAB1 Y01 sing 466 n n CAB HAB2 Y01 sing 467 n n CAB HAB3 Y01 sing 468 n n CAN HAN1 Y01 sing 469 n n CAN HAN2 Y01 sing 470 n n CAJ HAJ1 Y01 sing 471 n n CAJ HAJ2 Y01 sing 472 n n CAO HAO1 Y01 sing 473 n n CAO HAO2 Y01 sing 474 n n CBB HBB Y01 sing 475 n n CAC HAC1 Y01 sing 476 n n CAC HAC2 Y01 sing 477 n n CAC HAC3 Y01 sing 478 n n CBE HBE Y01 sing 479 n n CAP HAP1 Y01 sing 480 n n CAP HAP2 Y01 sing 481 n n CAQ HAQ1 Y01 sing 482 n n CAQ HAQ2 Y01 sing 483 n n CBG HBG Y01 sing 484 n n CBD HBD Y01 sing 485 n n CAE HAE1 Y01 sing 486 n n CAE HAE2 Y01 sing 487 n n CAE HAE3 Y01 sing 488 n n CAU HAU1 Y01 sing 489 n n CAU HAU2 Y01 sing 490 n n CAS HAS1 Y01 sing 491 n n CAS HAS2 Y01 sing 492 n n CBF HBF Y01 sing 493 n n CAK HAK1 Y01 sing 494 n n CAK HAK2 Y01 sing 495 n n CAI HAI Y01 sing 496 n n CAV HAV1 Y01 sing 497 n n CAV HAV2 Y01 sing 498 n n CBC HBC Y01 sing 499 n n CAD HAD1 Y01 sing 500 n n CAD HAD2 Y01 sing 501 n n CAD HAD3 Y01 sing 502 n n CAT HAT1 Y01 sing 503 n n CAT HAT2 Y01 sing 504 n n CAR HAR1 Y01 sing 505 n n CAR HAR2 Y01 sing 506 n n CAM HAM1 Y01 sing 507 n n CAM HAM2 Y01 sing 508 n n CAL HAL1 Y01 sing 509 n n CAL HAL2 Y01 sing 510 n n OAH HAH Y01 sing 511 n n # _atom_sites.entry_id 7FD8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 901 901 NAG NAG . D 3 QUS A 1 902 902 QUS QUS . E 4 Y01 A 1 903 903 Y01 Y01 . F 2 NAG B 1 901 901 NAG NAG . G 3 QUS B 1 902 902 QUS QUS . H 4 Y01 B 1 903 903 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . H 4 155.061 191.776 137.546 1 178.94 ? CAA Y01 903 B 1 HETATM 2 C CBA Y01 . . . H 4 153.733 191.965 138.262 1 179.56 ? CBA Y01 903 B 1 HETATM 3 C CAB Y01 . . . H 4 153.098 193.311 137.939 1 178.89 ? CAB Y01 903 B 1 HETATM 4 C CAN Y01 . . . H 4 153.899 191.751 139.767 1 180.31 ? CAN Y01 903 B 1 HETATM 5 C CAJ Y01 . . . H 4 152.612 191.332 140.466 1 181.53 ? CAJ Y01 903 B 1 HETATM 6 C CAO Y01 . . . H 4 152.047 190.048 139.87 1 182.59 ? CAO Y01 903 B 1 HETATM 7 C CBB Y01 . . . H 4 150.611 189.69 140.295 1 183.69 ? CBB Y01 903 B 1 HETATM 8 C CAC Y01 . . . H 4 149.989 190.662 141.318 1 183.6 ? CAC Y01 903 B 1 HETATM 9 C CBE Y01 . . . H 4 149.658 189.449 139.086 1 184.91 ? CBE Y01 903 B 1 HETATM 10 C CAP Y01 . . . H 4 150.26 189.684 137.676 1 185.19 ? CAP Y01 903 B 1 HETATM 11 C CAQ Y01 . . . H 4 149.666 188.626 136.753 1 185.6 ? CAQ Y01 903 B 1 HETATM 12 C CBG Y01 . . . H 4 148.479 188.076 137.541 1 186.16 ? CBG Y01 903 B 1 HETATM 13 C CBI Y01 . . . H 4 148.913 188.094 139.011 1 185.88 ? CBI Y01 903 B 1 HETATM 14 C CAE Y01 . . . H 4 149.844 186.915 139.399 1 186.17 ? CAE Y01 903 B 1 HETATM 15 C CAU Y01 . . . H 4 147.634 187.995 139.851 1 186.29 ? CAU Y01 903 B 1 HETATM 16 C CAS Y01 . . . H 4 146.744 186.8 139.484 1 187.03 ? CAS Y01 903 B 1 HETATM 17 C CBF Y01 . . . H 4 146.54 186.538 137.974 1 187.52 ? CBF Y01 903 B 1 HETATM 18 C CBD Y01 . . . H 4 147.801 186.78 137.107 1 186.95 ? CBD Y01 903 B 1 HETATM 19 C CAK Y01 . . . H 4 147.39 186.8 135.646 1 186.87 ? CAK Y01 903 B 1 HETATM 20 C CAI Y01 . . . H 4 146.651 185.513 135.269 1 187.32 ? CAI Y01 903 B 1 HETATM 21 C CAZ Y01 . . . H 4 145.536 185.116 136.188 1 187.74 ? CAZ Y01 903 B 1 HETATM 22 C CAV Y01 . . . H 4 144.882 183.83 135.689 1 187.67 ? CAV Y01 903 B 1 HETATM 23 C CBH Y01 . . . H 4 145.859 185.194 137.683 1 187.94 ? CBH Y01 903 B 1 HETATM 24 C CAD Y01 . . . H 4 146.668 183.997 138.219 1 188.19 ? CAD Y01 903 B 1 HETATM 25 C CAT Y01 . . . H 4 144.464 185.198 138.271 1 188.17 ? CAT Y01 903 B 1 HETATM 26 C CAR Y01 . . . H 4 143.383 185.125 137.178 1 188.06 ? CAR Y01 903 B 1 HETATM 27 C CBC Y01 . . . H 4 143.445 183.945 136.191 1 187.63 ? CBC Y01 903 B 1 HETATM 28 O OAW Y01 . . . H 4 142.876 182.727 136.745 1 187.43 ? OAW Y01 903 B 1 HETATM 29 C CAY Y01 . . . H 4 143.56 182.102 137.811 1 187.27 ? CAY Y01 903 B 1 HETATM 30 O OAG Y01 . . . H 4 144.706 181.337 137.46 1 187.17 ? OAG Y01 903 B 1 HETATM 31 C CAM Y01 . . . H 4 142.835 182.056 139.157 1 186.99 ? CAM Y01 903 B 1 HETATM 32 C CAL Y01 . . . H 4 143.866 181.838 140.251 1 186.33 ? CAL Y01 903 B 1 HETATM 33 C CAX Y01 . . . H 4 144.02 183.034 141.185 1 186.15 ? CAX Y01 903 B 1 HETATM 34 O OAH Y01 . . . H 4 145.148 183.569 141.315 1 185.95 ? OAH Y01 903 B 1 HETATM 35 O OAF Y01 . . . H 4 143.014 183.462 141.792 1 185.98 ? OAF Y01 903 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #