data_7FF8 # _model_server_result.job_id U1pdm4FLLJAPTYxg21VmPA _model_server_result.datetime_utc '2024-11-14 22:00:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ff8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":302}' # _entry.id 7FF8 # _exptl.entry_id 7FF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.145 _cell.angle_gamma 90 _cell.entry_id 7FF8 _cell.length_a 140.264 _cell.length_b 49.928 _cell.length_c 62.381 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 16 A CYS 20 1_555 E AU AU . A AU 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc2 A SG CYS 179 A CYS 183 1_555 F AU AU . A AU 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc3 B SG CYS 16 B CYS 20 1_555 O AU AU . B AU 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc4 B SG CYS 34 B CYS 38 1_555 M AU AU . B AU 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc5 B SG CYS 179 B CYS 183 1_555 N AU AU . B AU 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 92 n n P O2P CMP sing 93 n n P O5' CMP sing 94 n n P O3' CMP sing 95 n n O2P HOP2 CMP sing 96 n n O5' C5' CMP sing 97 n n C5' C4' CMP sing 98 n n C5' "H5'1" CMP sing 99 n n C5' "H5'2" CMP sing 100 n n C4' O4' CMP sing 101 n n C4' C3' CMP sing 102 n n C4' H4' CMP sing 103 n n O4' C1' CMP sing 104 n n C3' O3' CMP sing 105 n n C3' C2' CMP sing 106 n n C3' H3' CMP sing 107 n n C2' O2' CMP sing 108 n n C2' C1' CMP sing 109 n n C2' H2' CMP sing 110 n n O2' HO2' CMP sing 111 n n C1' N9 CMP sing 112 n n C1' H1' CMP sing 113 n n N9 C8 CMP sing 114 n y N9 C4 CMP sing 115 n y C8 N7 CMP doub 116 n y C8 H8 CMP sing 117 n n N7 C5 CMP sing 118 n y C5 C6 CMP sing 119 n y C5 C4 CMP doub 120 n y C6 N6 CMP sing 121 n n C6 N1 CMP doub 122 n y N6 HN61 CMP sing 123 n n N6 HN62 CMP sing 124 n n N1 C2 CMP sing 125 n y C2 N3 CMP doub 126 n y C2 H2 CMP sing 127 n n N3 C4 CMP sing 128 n y # _atom_sites.entry_id 7FF8 _atom_sites.fract_transf_matrix[1][1] 0.007129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001276 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CMP A 1 301 301 CMP CMP . D 3 AUF A 1 302 401 AUF EAU . E 4 AU A 1 303 402 AU AU . F 4 AU A 1 304 403 AU AU . G 5 CL A 1 305 410 CL CL . H 6 SO4 A 1 306 1 SO4 SO4 . I 6 SO4 A 1 307 3 SO4 SO4 . J 5 CL B 1 301 411 CL CL . K 2 CMP B 1 302 302 CMP CMP . L 3 AUF B 1 303 401 AUF EAU . M 4 AU B 1 304 402 AU AU . N 4 AU B 1 305 403 AU AU . O 4 AU B 1 306 404 AU AU . P 6 SO4 B 1 307 2 SO4 SO4 . Q 6 SO4 B 1 308 4 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . K 2 417.278 42.618 136.818 1 35.49 ? P CMP 302 B 1 HETATM 2 O O1P CMP . . . K 2 418.077 43.187 135.669 1 30.46 ? O1P CMP 302 B 1 HETATM 3 O O2P CMP . . . K 2 416.041 41.808 136.506 1 34.03 -1 O2P CMP 302 B 1 HETATM 4 O O5' CMP . . . K 2 416.781 43.844 137.728 1 28.71 ? O5' CMP 302 B 1 HETATM 5 C C5' CMP . . . K 2 416.479 43.678 139.112 1 28.03 ? C5' CMP 302 B 1 HETATM 6 C C4' CMP . . . K 2 417.52 42.796 139.735 1 28.47 ? C4' CMP 302 B 1 HETATM 7 O O4' CMP . . . K 2 417.193 42.371 141.077 1 24.01 ? O4' CMP 302 B 1 HETATM 8 C C3' CMP . . . K 2 417.706 41.493 139.015 1 30.88 ? C3' CMP 302 B 1 HETATM 9 O O3' CMP . . . K 2 418.253 41.696 137.731 1 32.4 ? O3' CMP 302 B 1 HETATM 10 C C2' CMP . . . K 2 418.532 40.706 140.018 1 30.37 ? C2' CMP 302 B 1 HETATM 11 O O2' CMP . . . K 2 419.877 41.16 140.031 1 33.7 ? O2' CMP 302 B 1 HETATM 12 C C1' CMP . . . K 2 417.858 41.142 141.333 1 25.28 ? C1' CMP 302 B 1 HETATM 13 N N9 CMP . . . K 2 416.872 40.15 141.801 1 19.95 ? N9 CMP 302 B 1 HETATM 14 C C8 CMP . . . K 2 415.663 39.912 141.258 1 20 ? C8 CMP 302 B 1 HETATM 15 N N7 CMP . . . K 2 415.009 38.928 141.926 1 17.47 ? N7 CMP 302 B 1 HETATM 16 C C5 CMP . . . K 2 415.811 38.518 142.925 1 16.69 ? C5 CMP 302 B 1 HETATM 17 C C6 CMP . . . K 2 415.736 37.512 144.009 1 18.05 ? C6 CMP 302 B 1 HETATM 18 N N6 CMP . . . K 2 414.642 36.728 144.157 1 21.12 ? N6 CMP 302 B 1 HETATM 19 N N1 CMP . . . K 2 416.795 37.403 144.841 1 18.19 ? N1 CMP 302 B 1 HETATM 20 C C2 CMP . . . K 2 417.888 38.176 144.702 1 15.67 ? C2 CMP 302 B 1 HETATM 21 N N3 CMP . . . K 2 418.023 39.108 143.742 1 19.17 ? N3 CMP 302 B 1 HETATM 22 C C4 CMP . . . K 2 417.037 39.325 142.838 1 18.37 ? C4 CMP 302 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 22 #