data_7FH0 # _model_server_result.job_id dkpm6TPx4RtEEQ33mPJCPg _model_server_result.datetime_utc '2024-11-09 02:21:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fh0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 7FH0 # _exptl.entry_id 7FH0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7FH0 _cell.length_a 154.456 _cell.length_b 154.456 _cell.length_c 257.916 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FH0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n D NAG 1 D 1 NAG A 801 NAG 3 n D NAG 2 D 2 NAG A 802 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 336 1_555 A SG CYS 43 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 61 A CYS 379 1_555 A SG CYS 114 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 A SG CYS 73 A CYS 391 1_555 A SG CYS 426 A CYS 744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 A SG CYS 162 A CYS 480 1_555 A SG CYS 170 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf5 A SG CYS 207 A CYS 525 1_555 A SG CYS 292 A CYS 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 237 A CYS 555 1_555 A SG CYS 262 A CYS 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 A SG CYS 280 A CYS 598 1_555 A SG CYS 333 A CYS 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 A SG CYS 381 A CYS 699 1_555 A SG CYS 389 A CYS 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf9 B SG CYS 22 B CYS 22 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 B SG CYS 155 B CYS 155 1_555 B SG CYS 229 B CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf11 C SG CYS 22 C CYS 22 1_555 C SG CYS 91 C CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf12 C SG CYS 155 C CYS 155 1_555 C SG CYS 229 C CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? covale ? covale1 A ND2 ASN 25 A ASN 343 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 244 A ASN 562 1_555 E C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7FH0 _atom_sites.fract_transf_matrix[1][1] 0.006474 _atom_sites.fract_transf_matrix[1][2] 0.003738 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 801 803 NAG NAG . F 5 PEG A 1 802 804 PEG PEG . G 5 PEG A 1 803 805 PEG PEG . H 5 PEG B 1 301 301 PEG PEG . I 6 GOL B 1 302 302 GOL GOL . J 6 GOL C 1 301 301 GOL GOL . K 7 HOH A 1 901 27 HOH HOH . K 7 HOH A 2 902 12 HOH HOH . K 7 HOH A 3 903 21 HOH HOH . K 7 HOH A 4 904 30 HOH HOH . K 7 HOH A 5 905 36 HOH HOH . K 7 HOH A 6 906 46 HOH HOH . K 7 HOH A 7 907 48 HOH HOH . K 7 HOH A 8 908 28 HOH HOH . K 7 HOH A 9 909 40 HOH HOH . K 7 HOH A 10 910 19 HOH HOH . K 7 HOH A 11 911 54 HOH HOH . K 7 HOH A 12 912 6 HOH HOH . K 7 HOH A 13 913 5 HOH HOH . K 7 HOH A 14 914 37 HOH HOH . K 7 HOH A 15 915 31 HOH HOH . K 7 HOH A 16 916 17 HOH HOH . K 7 HOH A 17 917 10 HOH HOH . K 7 HOH A 18 918 9 HOH HOH . K 7 HOH A 19 919 29 HOH HOH . K 7 HOH A 20 920 44 HOH HOH . K 7 HOH A 21 921 35 HOH HOH . K 7 HOH A 22 922 45 HOH HOH . K 7 HOH A 23 923 32 HOH HOH . K 7 HOH A 24 924 51 HOH HOH . K 7 HOH A 25 925 13 HOH HOH . L 7 HOH B 1 401 22 HOH HOH . L 7 HOH B 2 402 18 HOH HOH . L 7 HOH B 3 403 23 HOH HOH . L 7 HOH B 4 404 56 HOH HOH . L 7 HOH B 5 405 20 HOH HOH . L 7 HOH B 6 406 38 HOH HOH . L 7 HOH B 7 407 3 HOH HOH . L 7 HOH B 8 408 2 HOH HOH . L 7 HOH B 9 409 24 HOH HOH . L 7 HOH B 10 410 55 HOH HOH . L 7 HOH B 11 411 16 HOH HOH . L 7 HOH B 12 412 14 HOH HOH . L 7 HOH B 13 413 25 HOH HOH . L 7 HOH B 14 414 4 HOH HOH . L 7 HOH B 15 415 39 HOH HOH . L 7 HOH B 16 416 50 HOH HOH . M 7 HOH C 1 401 8 HOH HOH . M 7 HOH C 2 402 52 HOH HOH . M 7 HOH C 3 403 42 HOH HOH . M 7 HOH C 4 404 15 HOH HOH . M 7 HOH C 5 405 7 HOH HOH . M 7 HOH C 6 406 26 HOH HOH . M 7 HOH C 7 407 49 HOH HOH . M 7 HOH C 8 408 1 HOH HOH . M 7 HOH C 9 409 53 HOH HOH . M 7 HOH C 10 410 11 HOH HOH . M 7 HOH C 11 411 41 HOH HOH . M 7 HOH C 12 412 47 HOH HOH . M 7 HOH C 13 413 43 HOH HOH . M 7 HOH C 14 414 34 HOH HOH . M 7 HOH C 15 415 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 10.286 25.639 -0.166 1 171.67 ? C1 NAG 801 A 1 HETATM 2 C C2 NAG . . . E 4 9.121 24.86 -0.827 1 175.13 ? C2 NAG 801 A 1 HETATM 3 C C3 NAG . . . E 4 9.51 23.418 -1.205 1 177.63 ? C3 NAG 801 A 1 HETATM 4 C C4 NAG . . . E 4 10.853 23.35 -1.935 1 176.17 ? C4 NAG 801 A 1 HETATM 5 C C5 NAG . . . E 4 11.923 24.066 -1.113 1 169.44 ? C5 NAG 801 A 1 HETATM 6 C C6 NAG . . . E 4 13.303 24.04 -1.782 1 158.35 ? C6 NAG 801 A 1 HETATM 7 C C7 NAG . . . E 4 7.684 24.424 1.19 1 159.24 ? C7 NAG 801 A 1 HETATM 8 C C8 NAG . . . E 4 6.292 24.522 1.747 1 155.02 ? C8 NAG 801 A 1 HETATM 9 N N2 NAG . . . E 4 7.861 24.876 -0.063 1 167.75 ? N2 NAG 801 A 1 HETATM 10 O O3 NAG . . . E 4 8.503 22.86 -2.059 1 176.13 ? O3 NAG 801 A 1 HETATM 11 O O4 NAG . . . E 4 11.233 21.984 -2.17 1 174.12 ? O4 NAG 801 A 1 HETATM 12 O O5 NAG . . . E 4 11.515 25.422 -0.889 1 175.73 ? O5 NAG 801 A 1 HETATM 13 O O6 NAG . . . E 4 13.261 24.537 -3.128 1 143.95 ? O6 NAG 801 A 1 HETATM 14 O O7 NAG . . . E 4 8.576 23.952 1.872 1 157.67 ? O7 NAG 801 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #