data_7FI5 # _model_server_result.job_id 7qBXYZ6TLynic-PU8hXZhw _model_server_result.datetime_utc '2024-11-22 00:07:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fi5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7FI5 # _exptl.entry_id 7FI5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7FI5 _cell.length_a 123.379 _cell.length_b 123.379 _cell.length_c 180.834 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FI5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 96 1_555 A SG CYS 28 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf2 A SG CYS 22 A CYS 99 1_555 A SG CYS 33 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 50 A CYS 127 1_555 A SG CYS 134 A CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf4 A SG CYS 112 A CYS 189 1_555 A SG CYS 126 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? disulf ? disulf5 B SG CYS 19 B CYS 96 1_555 B SG CYS 28 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? disulf ? disulf6 B SG CYS 22 B CYS 99 1_555 B SG CYS 33 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf7 B SG CYS 50 B CYS 127 1_555 B SG CYS 134 B CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf8 B SG CYS 112 B CYS 189 1_555 B SG CYS 126 B CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf9 C SG CYS 37 C CYS 36 1_555 C SG CYS 42 C CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf10 C SG CYS 97 C CYS 96 1_555 C SG CYS 165 C CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? disulf ? disulf11 C SG CYS 203 C CYS 202 1_555 C SG CYS 260 C CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7FI5 _atom_sites.fract_transf_matrix[1][1] 0.008105 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00553 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL A 1 301 1 GOL GOL . E 3 GOL A 1 302 2 GOL GOL . F 3 GOL B 1 301 3 GOL GOL . G 4 HOH A 1 401 10 HOH HOH . G 4 HOH A 2 402 20 HOH HOH . G 4 HOH A 3 403 19 HOH HOH . G 4 HOH A 4 404 17 HOH HOH . G 4 HOH A 5 405 8 HOH HOH . G 4 HOH A 6 406 21 HOH HOH . G 4 HOH A 7 407 24 HOH HOH . H 4 HOH B 1 401 9 HOH HOH . H 4 HOH B 2 402 22 HOH HOH . H 4 HOH B 3 403 16 HOH HOH . H 4 HOH B 4 404 13 HOH HOH . H 4 HOH B 5 405 3 HOH HOH . I 4 HOH C 1 301 4 HOH HOH . I 4 HOH C 2 302 6 HOH HOH . I 4 HOH C 3 303 7 HOH HOH . I 4 HOH C 4 304 23 HOH HOH . I 4 HOH C 5 305 14 HOH HOH . I 4 HOH C 6 306 1 HOH HOH . I 4 HOH C 7 307 15 HOH HOH . I 4 HOH C 8 308 12 HOH HOH . I 4 HOH C 9 309 5 HOH HOH . I 4 HOH C 10 310 2 HOH HOH . I 4 HOH C 11 311 18 HOH HOH . I 4 HOH C 12 312 25 HOH HOH . I 4 HOH C 13 313 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -44.335 16.044 -17.208 1 92.67 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . D 3 -42.985 15.628 -17.38 1 89.09 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . D 3 -45.256 14.848 -17.271 1 98.57 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . D 3 -45.32 14.385 -18.62 1 110.98 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . D 3 -44.806 13.729 -16.354 1 98.17 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . D 3 -45.865 12.83 -16.035 1 95.11 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #