data_7FI9 # _model_server_result.job_id 8pXtNR-aAYLDHV2THTgfPA _model_server_result.datetime_utc '2024-10-21 15:08:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fi9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7FI9 # _exptl.entry_id 7FI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7FI9 _cell.length_a 123.808 _cell.length_b 123.808 _cell.length_c 181.323 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 96 1_555 A SG CYS 28 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? disulf ? disulf2 A SG CYS 22 A CYS 99 1_555 A SG CYS 33 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? disulf ? disulf3 A SG CYS 50 A CYS 127 1_555 A SG CYS 134 A CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf4 A SG CYS 112 A CYS 189 1_555 A SG CYS 126 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? disulf ? disulf5 B SG CYS 19 B CYS 96 1_555 B SG CYS 28 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf6 B SG CYS 22 B CYS 99 1_555 B SG CYS 33 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf7 B SG CYS 50 B CYS 127 1_555 B SG CYS 134 B CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf8 B SG CYS 112 B CYS 189 1_555 B SG CYS 126 B CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf9 C SG CYS 37 C CYS 36 1_555 C SG CYS 42 C CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf10 C SG CYS 97 C CYS 96 1_555 C SG CYS 165 C CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? disulf ? disulf11 C SG CYS 203 C CYS 202 1_555 C SG CYS 260 C CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7FI9 _atom_sites.fract_transf_matrix[1][1] 0.008077 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005515 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL B 1 301 1 GOL GOL . E 3 GOL C 1 301 2 GOL GOL . F 4 HOH A 1 301 102 HOH HOH . F 4 HOH A 2 302 7 HOH HOH . F 4 HOH A 3 303 149 HOH HOH . F 4 HOH A 4 304 113 HOH HOH . F 4 HOH A 5 305 148 HOH HOH . F 4 HOH A 6 306 58 HOH HOH . F 4 HOH A 7 307 15 HOH HOH . F 4 HOH A 8 308 9 HOH HOH . F 4 HOH A 9 309 135 HOH HOH . F 4 HOH A 10 310 108 HOH HOH . F 4 HOH A 11 311 46 HOH HOH . F 4 HOH A 12 312 93 HOH HOH . F 4 HOH A 13 313 64 HOH HOH . F 4 HOH A 14 314 34 HOH HOH . F 4 HOH A 15 315 19 HOH HOH . F 4 HOH A 16 316 99 HOH HOH . F 4 HOH A 17 317 57 HOH HOH . F 4 HOH A 18 318 116 HOH HOH . F 4 HOH A 19 319 110 HOH HOH . F 4 HOH A 20 320 118 HOH HOH . F 4 HOH A 21 321 33 HOH HOH . F 4 HOH A 22 322 124 HOH HOH . F 4 HOH A 23 323 120 HOH HOH . F 4 HOH A 24 324 73 HOH HOH . F 4 HOH A 25 325 16 HOH HOH . F 4 HOH A 26 326 138 HOH HOH . F 4 HOH A 27 327 134 HOH HOH . F 4 HOH A 28 328 84 HOH HOH . F 4 HOH A 29 329 56 HOH HOH . F 4 HOH A 30 330 41 HOH HOH . F 4 HOH A 31 331 18 HOH HOH . F 4 HOH A 32 332 137 HOH HOH . F 4 HOH A 33 333 61 HOH HOH . F 4 HOH A 34 334 23 HOH HOH . F 4 HOH A 35 335 91 HOH HOH . F 4 HOH A 36 336 106 HOH HOH . F 4 HOH A 37 337 128 HOH HOH . G 4 HOH B 1 401 97 HOH HOH . G 4 HOH B 2 402 90 HOH HOH . G 4 HOH B 3 403 100 HOH HOH . G 4 HOH B 4 404 10 HOH HOH . G 4 HOH B 5 405 59 HOH HOH . G 4 HOH B 6 406 45 HOH HOH . G 4 HOH B 7 407 67 HOH HOH . G 4 HOH B 8 408 27 HOH HOH . G 4 HOH B 9 409 29 HOH HOH . G 4 HOH B 10 410 42 HOH HOH . G 4 HOH B 11 411 111 HOH HOH . G 4 HOH B 12 412 117 HOH HOH . G 4 HOH B 13 413 48 HOH HOH . G 4 HOH B 14 414 125 HOH HOH . G 4 HOH B 15 415 122 HOH HOH . G 4 HOH B 16 416 132 HOH HOH . G 4 HOH B 17 417 79 HOH HOH . G 4 HOH B 18 418 28 HOH HOH . G 4 HOH B 19 419 44 HOH HOH . G 4 HOH B 20 420 4 HOH HOH . G 4 HOH B 21 421 38 HOH HOH . G 4 HOH B 22 422 32 HOH HOH . G 4 HOH B 23 423 98 HOH HOH . G 4 HOH B 24 424 140 HOH HOH . G 4 HOH B 25 425 62 HOH HOH . G 4 HOH B 26 426 8 HOH HOH . G 4 HOH B 27 427 92 HOH HOH . G 4 HOH B 28 428 131 HOH HOH . G 4 HOH B 29 429 85 HOH HOH . G 4 HOH B 30 430 109 HOH HOH . G 4 HOH B 31 431 51 HOH HOH . G 4 HOH B 32 432 88 HOH HOH . G 4 HOH B 33 433 146 HOH HOH . G 4 HOH B 34 434 104 HOH HOH . G 4 HOH B 35 435 103 HOH HOH . H 4 HOH C 1 401 119 HOH HOH . H 4 HOH C 2 402 24 HOH HOH . H 4 HOH C 3 403 40 HOH HOH . H 4 HOH C 4 404 129 HOH HOH . H 4 HOH C 5 405 68 HOH HOH . H 4 HOH C 6 406 101 HOH HOH . H 4 HOH C 7 407 2 HOH HOH . H 4 HOH C 8 408 130 HOH HOH . H 4 HOH C 9 409 60 HOH HOH . H 4 HOH C 10 410 96 HOH HOH . H 4 HOH C 11 411 31 HOH HOH . H 4 HOH C 12 412 81 HOH HOH . H 4 HOH C 13 413 20 HOH HOH . H 4 HOH C 14 414 3 HOH HOH . H 4 HOH C 15 415 39 HOH HOH . H 4 HOH C 16 416 1 HOH HOH . H 4 HOH C 17 417 37 HOH HOH . H 4 HOH C 18 418 63 HOH HOH . H 4 HOH C 19 419 139 HOH HOH . H 4 HOH C 20 420 72 HOH HOH . H 4 HOH C 21 421 25 HOH HOH . H 4 HOH C 22 422 26 HOH HOH . H 4 HOH C 23 423 82 HOH HOH . H 4 HOH C 24 424 14 HOH HOH . H 4 HOH C 25 425 53 HOH HOH . H 4 HOH C 26 426 21 HOH HOH . H 4 HOH C 27 427 22 HOH HOH . H 4 HOH C 28 428 89 HOH HOH . H 4 HOH C 29 429 49 HOH HOH . H 4 HOH C 30 430 52 HOH HOH . H 4 HOH C 31 431 54 HOH HOH . H 4 HOH C 32 432 115 HOH HOH . H 4 HOH C 33 433 5 HOH HOH . H 4 HOH C 34 434 76 HOH HOH . H 4 HOH C 35 435 114 HOH HOH . H 4 HOH C 36 436 136 HOH HOH . H 4 HOH C 37 437 71 HOH HOH . H 4 HOH C 38 438 133 HOH HOH . H 4 HOH C 39 439 86 HOH HOH . H 4 HOH C 40 440 13 HOH HOH . H 4 HOH C 41 441 112 HOH HOH . H 4 HOH C 42 442 30 HOH HOH . H 4 HOH C 43 443 74 HOH HOH . H 4 HOH C 44 444 126 HOH HOH . H 4 HOH C 45 445 50 HOH HOH . H 4 HOH C 46 446 43 HOH HOH . H 4 HOH C 47 447 143 HOH HOH . H 4 HOH C 48 448 80 HOH HOH . H 4 HOH C 49 449 141 HOH HOH . H 4 HOH C 50 450 6 HOH HOH . H 4 HOH C 51 451 78 HOH HOH . H 4 HOH C 52 452 70 HOH HOH . H 4 HOH C 53 453 55 HOH HOH . H 4 HOH C 54 454 35 HOH HOH . H 4 HOH C 55 455 47 HOH HOH . H 4 HOH C 56 456 12 HOH HOH . H 4 HOH C 57 457 75 HOH HOH . H 4 HOH C 58 458 69 HOH HOH . H 4 HOH C 59 459 65 HOH HOH . H 4 HOH C 60 460 17 HOH HOH . H 4 HOH C 61 461 11 HOH HOH . H 4 HOH C 62 462 94 HOH HOH . H 4 HOH C 63 463 83 HOH HOH . H 4 HOH C 64 464 145 HOH HOH . H 4 HOH C 65 465 36 HOH HOH . H 4 HOH C 66 466 95 HOH HOH . H 4 HOH C 67 467 87 HOH HOH . H 4 HOH C 68 468 105 HOH HOH . H 4 HOH C 69 469 121 HOH HOH . H 4 HOH C 70 470 127 HOH HOH . H 4 HOH C 71 471 107 HOH HOH . H 4 HOH C 72 472 123 HOH HOH . H 4 HOH C 73 473 77 HOH HOH . H 4 HOH C 74 474 144 HOH HOH . H 4 HOH C 75 475 147 HOH HOH . H 4 HOH C 76 476 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 32.251 35.985 -20.638 1 84.12 ? C1 GOL 301 B 1 HETATM 2 O O1 GOL . . . D 3 31.431 35.392 -19.634 1 76.15 ? O1 GOL 301 B 1 HETATM 3 C C2 GOL . . . D 3 31.839 35.547 -22.035 1 87.64 ? C2 GOL 301 B 1 HETATM 4 O O2 GOL . . . D 3 32.899 35.794 -22.974 1 81.79 ? O2 GOL 301 B 1 HETATM 5 C C3 GOL . . . D 3 30.551 36.201 -22.505 1 85.25 ? C3 GOL 301 B 1 HETATM 6 O O3 GOL . . . D 3 29.66 35.263 -23.106 1 80.88 ? O3 GOL 301 B 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 6 #