data_7FJB # _model_server_result.job_id LE-5Ykg3ex5fXsjyqKPLig _model_server_result.datetime_utc '2024-10-20 07:34:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fjb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7FJB # _exptl.entry_id 7FJB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7FJB _cell.length_a 101.22 _cell.length_b 152.374 _cell.length_c 131.011 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FJB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ARG 90 A ARG 90 1_555 L NA NA . A NA 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc2 A O PHE 146 A PHE 146 1_555 O NA NA . A NA 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc3 A O THR 148 A THR 148 1_555 I NA NA . A NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? metalc ? metalc4 A O PHE 150 A PHE 150 1_555 N NA NA . A NA 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc5 A O GLN 152 A GLN 152 1_555 M NA NA . A NA 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc6 A OG1 THR 153 A THR 153 1_555 N NA NA . A NA 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc7 A O LEU 154 A LEU 154 1_555 M NA NA . A NA 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc8 A O TYR 176 A TYR 176 1_555 I NA NA . A NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc9 A O PHE 178 A PHE 178 1_555 J NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.117 ? metalc ? metalc10 A O CYS 212 A CYS 212 1_555 F NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc11 A OG1 THR 225 A THR 225 1_555 J NA NA . A NA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc12 A OG SER 226 A SER 226 1_555 F NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc13 A O SER 233 A SER 233 1_555 F NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc14 A O ASP 243 A ASP 243 1_555 E NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc15 A O MET 317 A MET 317 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc16 A O ASN 345 A ASN 345 1_555 G NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc17 G NA NA . A NA 505 1_555 B O MET 317 B MET 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc18 H NA NA . A NA 506 1_555 B O ASN 345 B ASN 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc19 K NA NA . A NA 509 1_555 B O GLY 320 B GLY 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.056 ? metalc ? metalc20 B O LEU 198 B LEU 198 1_555 Q NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? metalc ? metalc21 B O LEU 201 B LEU 201 1_555 Q NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc22 B O CYS 212 B CYS 212 1_555 R NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc23 B OG SER 226 B SER 226 1_555 R NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc24 B O SER 233 B SER 233 1_555 R NA NA . B NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? metalc ? metalc25 B O ASP 243 B ASP 243 1_555 S NA NA . B NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 19 n n PG O2G ANP sing 20 n n PG O3G ANP sing 21 n n PG N3B ANP sing 22 n n O2G HOG2 ANP sing 23 n n O3G HOG3 ANP sing 24 n n PB O1B ANP doub 25 n n PB O2B ANP sing 26 n n PB N3B ANP sing 27 n n PB O3A ANP sing 28 n n O2B HOB2 ANP sing 29 n n N3B HNB1 ANP sing 30 n n PA O1A ANP doub 31 n n PA O2A ANP sing 32 n n PA O3A ANP sing 33 n n PA O5' ANP sing 34 n n O2A HOA2 ANP sing 35 n n O5' C5' ANP sing 36 n n C5' C4' ANP sing 37 n n C5' "H5'1" ANP sing 38 n n C5' "H5'2" ANP sing 39 n n C4' O4' ANP sing 40 n n C4' C3' ANP sing 41 n n C4' H4' ANP sing 42 n n O4' C1' ANP sing 43 n n C3' O3' ANP sing 44 n n C3' C2' ANP sing 45 n n C3' H3' ANP sing 46 n n O3' HO3' ANP sing 47 n n C2' O2' ANP sing 48 n n C2' C1' ANP sing 49 n n C2' H2' ANP sing 50 n n O2' HO2' ANP sing 51 n n C1' N9 ANP sing 52 n n C1' H1' ANP sing 53 n n N9 C8 ANP sing 54 n y N9 C4 ANP sing 55 n y C8 N7 ANP doub 56 n y C8 H8 ANP sing 57 n n N7 C5 ANP sing 58 n y C5 C6 ANP sing 59 n y C5 C4 ANP doub 60 n y C6 N6 ANP sing 61 n n C6 N1 ANP doub 62 n y N6 HN61 ANP sing 63 n n N6 HN62 ANP sing 64 n n N1 C2 ANP sing 65 n y C2 N3 ANP doub 66 n y C2 H2 ANP sing 67 n n N3 C4 ANP sing 68 n y # _atom_sites.entry_id 7FJB _atom_sites.fract_transf_matrix[1][1] 0.009879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007633 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 501 1 ANP ANP . D 3 ACT A 1 502 3 ACT ACT . E 4 NA A 1 503 2 NA NA . F 4 NA A 1 504 3 NA NA . G 4 NA A 1 505 4 NA NA . H 4 NA A 1 506 6 NA NA . I 4 NA A 1 507 7 NA NA . J 4 NA A 1 508 8 NA NA . K 4 NA A 1 509 9 NA NA . L 4 NA A 1 510 10 NA NA . M 4 NA A 1 511 11 NA NA . N 4 NA A 1 512 12 NA NA . O 4 NA A 1 513 14 NA NA . P 2 ANP B 1 501 2 ANP ANP . Q 4 NA B 1 502 1 NA NA . R 4 NA B 1 503 5 NA NA . S 4 NA B 1 504 13 NA NA . T 5 HOH A 1 601 2 HOH HOH . T 5 HOH A 2 602 3 HOH HOH . U 5 HOH B 1 601 1 HOH HOH . U 5 HOH B 2 602 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 3.396 32.135 -4.872 1 131.18 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . C 2 3.741 32.755 -3.554 1 131.65 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . C 2 4.394 32.661 -5.977 1 131.13 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . C 2 3.533 30.567 -4.745 1 129.5 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . C 2 0.763 32.663 -4.028 1 113 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . C 2 -0.37 33.572 -4.394 1 113.85 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . C 2 1.55 33.304 -2.843 1 117.99 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . C 2 1.801 32.498 -5.338 1 123.95 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . C 2 0.31 30.648 -2.152 1 59.54 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . C 2 1.721 30.403 -1.798 1 46.05 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . C 2 -0.512 31.596 -1.264 1 68.44 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . C 2 0.212 31.245 -3.642 1 86.76 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . C 2 -0.345 29.224 -2.199 1 57.8 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . C 2 -0.591 28.664 -3.489 1 46.92 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . C 2 -1.11 27.248 -3.5 1 37.57 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . C 2 -1.234 26.707 -2.182 1 41.43 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . C 2 -2.499 27.061 -4.086 1 43.68 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . C 2 -2.429 27.043 -5.506 1 57.88 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . C 2 -2.946 25.725 -3.483 1 45.58 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . C 2 -2.7 24.691 -4.42 1 67.26 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . C 2 -2.004 25.53 -2.291 1 36.18 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . C 2 -2.658 25.279 -1.01 1 37.92 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . C 2 -3.265 26.195 -0.186 1 39.58 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . C 2 -3.743 25.68 0.919 1 40.25 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . C 2 -3.411 24.334 0.834 1 43.46 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . C 2 -3.626 23.246 1.695 1 48.98 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . C 2 -4.271 23.336 2.861 1 54.54 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . C 2 -3.167 22.035 1.306 1 46.22 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . C 2 -2.534 21.934 0.134 1 44.64 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . C 2 -2.273 22.889 -0.761 1 36.11 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . C 2 -2.737 24.08 -0.35 1 35.16 ? C4 ANP 501 A 1 HETATM 32 H HNB1 ANP . . . C 2 1.495 31.821 -5.86 1 150.15 ? HNB1 ANP 501 A 1 HETATM 33 H "H5'1" ANP . . . C 2 0.247 28.681 -3.984 1 57.71 ? "H5'1" ANP 501 A 1 HETATM 34 H "H5'2" ANP . . . C 2 -1.245 29.228 -3.937 1 57.71 ? "H5'2" ANP 501 A 1 HETATM 35 H H4' ANP . . . C 2 -0.458 26.689 -3.97 1 46.49 ? H4' ANP 501 A 1 HETATM 36 H H3' ANP . . . C 2 -3.087 27.751 -3.774 1 53.84 ? H3' ANP 501 A 1 HETATM 37 H HO3' ANP . . . C 2 -1.725 26.583 -5.78 1 70.87 ? HO3' ANP 501 A 1 HETATM 38 H H2' ANP . . . C 2 -3.85 25.785 -3.153 1 56.11 ? H2' ANP 501 A 1 HETATM 39 H HO2' ANP . . . C 2 -1.821 24.599 -4.525 1 82.13 ? HO2' ANP 501 A 1 HETATM 40 H H1' ANP . . . C 2 -1.428 24.781 -2.509 1 44.83 ? H1' ANP 501 A 1 HETATM 41 H H8 ANP . . . C 2 -3.332 27.124 -0.399 1 48.91 ? H8 ANP 501 A 1 HETATM 42 H HN61 ANP . . . C 2 -4.668 24.133 3.111 1 66.86 ? HN61 ANP 501 A 1 HETATM 43 H HN62 ANP . . . C 2 -4.342 22.6 3.399 1 66.86 ? HN62 ANP 501 A 1 HETATM 44 H H2 ANP . . . C 2 -2.222 21.045 -0.099 1 54.98 ? H2 ANP 501 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #