data_7FJO
#
_model_server_result.job_id            7EWnsoE3tUhnCjO_KBjTWA 
_model_server_result.datetime_utc      '2024-11-21 09:07:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7fjo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":1304}' 
#
_entry.id    7FJO 
#
_exptl.entry_id    7FJO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    25 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7FJO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7FJO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
? 4 BA N N 
? 4 CA N N 
? 4 DA N N 
? 4 EA N N 
? 4 FA N N 
? 4 GA N N 
? 4 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 F CYS 22 1_555 A SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf2 B SG CYS 23 G CYS 23 1_555 B SG CYS 94 G CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf4 D SG CYS 22 J CYS 22 1_555 D SG CYS 96 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf5 E SG CYS 23 K CYS 23 1_555 E SG CYS 94 K CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 F SG CYS 23 L CYS 23 1_555 F SG CYS 94 L CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf7 G SG CYS 318 A CYS 336 1_555 G SG CYS 343 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 G SG CYS 361 A CYS 379 1_555 G SG CYS 414 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 G SG CYS 373 A CYS 391 1_555 G SG CYS 507 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 G SG CYS 462 A CYS 480 1_555 G SG CYS 470 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 G SG CYS 599 A CYS 617 1_555 G SG CYS 631 A CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf12 G SG CYS 1064 A CYS 1082 1_555 G SG CYS 1108 A CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf13 H SG CYS 318 B CYS 336 1_555 H SG CYS 343 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf14 H SG CYS 361 B CYS 379 1_555 H SG CYS 414 B CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf15 H SG CYS 373 B CYS 391 1_555 H SG CYS 507 B CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf16 H SG CYS 462 B CYS 480 1_555 H SG CYS 470 B CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf17 H SG CYS 599 B CYS 617 1_555 H SG CYS 631 B CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
disulf ? disulf18 H SG CYS 1064 B CYS 1082 1_555 H SG CYS 1108 B CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf19 I SG CYS 318 C CYS 336 1_555 I SG CYS 343 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf20 I SG CYS 361 C CYS 379 1_555 I SG CYS 414 C CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf21 I SG CYS 373 C CYS 391 1_555 I SG CYS 507 C CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf22 I SG CYS 462 C CYS 480 1_555 I SG CYS 470 C CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf23 I SG CYS 599 C CYS 617 1_555 I SG CYS 631 C CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
disulf ? disulf24 I SG CYS 1064 C CYS 1082 1_555 I SG CYS 1108 C CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
covale ? covale1 G ND2 ASN 264 A ASN 282 1_555 J C1 NAG . A NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? 
covale ? covale2 G ND2 ASN 598 A ASN 616 1_555 K C1 NAG . A NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale3 G ND2 ASN 639 A ASN 657 1_555 L C1 NAG . A NAG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale4 G ND2 ASN 691 A ASN 709 1_555 M C1 NAG . A NAG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale5 G ND2 ASN 699 A ASN 717 1_555 N C1 NAG . A NAG 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale6 G ND2 ASN 783 A ASN 801 1_555 O C1 NAG . A NAG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale7 G ND2 ASN 1056 A ASN 1074 1_555 P C1 NAG . A NAG 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale8 G ND2 ASN 1116 A ASN 1134 1_555 Q C1 NAG . A NAG 1308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale9 H ND2 ASN 313 B ASN 331 1_555 R C1 NAG . B NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? 
covale ? covale10 H ND2 ASN 598 B ASN 616 1_555 S C1 NAG . B NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale11 H ND2 ASN 639 B ASN 657 1_555 T C1 NAG . B NAG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale12 H ND2 ASN 691 B ASN 709 1_555 U C1 NAG . B NAG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale13 H ND2 ASN 699 B ASN 717 1_555 V C1 NAG . B NAG 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale14 H ND2 ASN 783 B ASN 801 1_555 W C1 NAG . B NAG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale15 H ND2 ASN 1056 B ASN 1074 1_555 X C1 NAG . B NAG 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale16 H ND2 ASN 1116 B ASN 1134 1_555 Y C1 NAG . B NAG 1308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale17 I ND2 ASN 264 C ASN 282 1_555 Z C1 NAG . C NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale18 I ND2 ASN 313 C ASN 331 1_555 AA C1 NAG . C NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? 
covale ? covale19 I ND2 ASN 598 C ASN 616 1_555 BA C1 NAG . C NAG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale20 I ND2 ASN 639 C ASN 657 1_555 CA C1 NAG . C NAG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale21 I ND2 ASN 691 C ASN 709 1_555 DA C1 NAG . C NAG 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale22 I ND2 ASN 699 C ASN 717 1_555 EA C1 NAG . C NAG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale23 I ND2 ASN 783 C ASN 801 1_555 FA C1 NAG . C NAG 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale24 I ND2 ASN 1056 C ASN 1074 1_555 GA C1 NAG . C NAG 1308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale25 I ND2 ASN 1116 C ASN 1134 1_555 HA C1 NAG . C NAG 1309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 235 n n 
C1 O1 NAG sing 236 n n 
C1 O5 NAG sing 237 n n 
C1 H1 NAG sing 238 n n 
C2 C3 NAG sing 239 n n 
C2 N2 NAG sing 240 n n 
C2 H2 NAG sing 241 n n 
C3 C4 NAG sing 242 n n 
C3 O3 NAG sing 243 n n 
C3 H3 NAG sing 244 n n 
C4 C5 NAG sing 245 n n 
C4 O4 NAG sing 246 n n 
C4 H4 NAG sing 247 n n 
C5 C6 NAG sing 248 n n 
C5 O5 NAG sing 249 n n 
C5 H5 NAG sing 250 n n 
C6 O6 NAG sing 251 n n 
C6 H61 NAG sing 252 n n 
C6 H62 NAG sing 253 n n 
C7 C8 NAG sing 254 n n 
C7 N2 NAG sing 255 n n 
C7 O7 NAG doub 256 n n 
C8 H81 NAG sing 257 n n 
C8 H82 NAG sing 258 n n 
C8 H83 NAG sing 259 n n 
N2 HN2 NAG sing 260 n n 
O1 HO1 NAG sing 261 n n 
O3 HO3 NAG sing 262 n n 
O4 HO4 NAG sing 263 n n 
O6 HO6 NAG sing 264 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7FJO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 NAG A 1 1301 1301 NAG NAG . 
K 4 NAG A 1 1302 1302 NAG NAG . 
L 4 NAG A 1 1303 1303 NAG NAG . 
M 4 NAG A 1 1304 1304 NAG NAG . 
N 4 NAG A 1 1305 1305 NAG NAG . 
O 4 NAG A 1 1306 1306 NAG NAG . 
P 4 NAG A 1 1307 1307 NAG NAG . 
Q 4 NAG A 1 1308 1308 NAG NAG . 
R 4 NAG B 1 1301 1301 NAG NAG . 
S 4 NAG B 1 1302 1302 NAG NAG . 
T 4 NAG B 1 1303 1303 NAG NAG . 
U 4 NAG B 1 1304 1304 NAG NAG . 
V 4 NAG B 1 1305 1305 NAG NAG . 
W 4 NAG B 1 1306 1306 NAG NAG . 
X 4 NAG B 1 1307 1307 NAG NAG . 
Y 4 NAG B 1 1308 1308 NAG NAG . 
Z 4 NAG C 1 1301 1301 NAG NAG . 
AA 4 NAG C 1 1302 1302 NAG NAG . 
BA 4 NAG C 1 1303 1303 NAG NAG . 
CA 4 NAG C 1 1304 1304 NAG NAG . 
DA 4 NAG C 1 1305 1305 NAG NAG . 
EA 4 NAG C 1 1306 1306 NAG NAG . 
FA 4 NAG C 1 1307 1307 NAG NAG . 
GA 4 NAG C 1 1308 1308 NAG NAG . 
HA 4 NAG C 1 1309 1309 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . U 4 108.859 186.199 203.216 1 30 ? C1 NAG 1304 B 1 
HETATM 2 C C2 NAG . . . U 4 107.738 187.23 203.206 1 30 ? C2 NAG 1304 B 1 
HETATM 3 C C3 NAG . . . U 4 106.535 186.655 203.933 1 30 ? C3 NAG 1304 B 1 
HETATM 4 C C4 NAG . . . U 4 106.142 185.344 203.273 1 30 ? C4 NAG 1304 B 1 
HETATM 5 C C5 NAG . . . U 4 107.326 184.385 203.28 1 30 ? C5 NAG 1304 B 1 
HETATM 6 C C6 NAG . . . U 4 106.972 183.079 202.583 1 30 ? C6 NAG 1304 B 1 
HETATM 7 C C7 NAG . . . U 4 108.662 189.482 203.168 1 30 ? C7 NAG 1304 B 1 
HETATM 8 C C8 NAG . . . U 4 109.352 190.53 203.988 1 30 ? C8 NAG 1304 B 1 
HETATM 9 N N2 NAG . . . U 4 108.152 188.46 203.852 1 30 ? N2 NAG 1304 B 1 
HETATM 10 O O3 NAG . . . U 4 105.445 187.578 203.861 1 30 ? O3 NAG 1304 B 1 
HETATM 11 O O4 NAG . . . U 4 105.044 184.759 203.981 1 30 ? O4 NAG 1304 B 1 
HETATM 12 O O5 NAG . . . U 4 108.437 184.979 202.612 1 30 ? O5 NAG 1304 B 1 
HETATM 13 O O6 NAG . . . U 4 106.77 183.334 201.189 1 30 ? O6 NAG 1304 B 1 
HETATM 14 O O7 NAG . . . U 4 108.576 189.56 201.954 1 30 ? O7 NAG 1304 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#