data_7FK4
#
_model_server_result.job_id            WooTpXDnNxy2JEa1Lw-H1w 
_model_server_result.datetime_utc      '2024-11-15 05:27:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7fk4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2101}' 
#
_entry.id    7FK4 
#
_exptl.entry_id    7FK4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              224.323 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4-methylpiperazin-1-yl)(5-methylthiophen-3-yl)methanone 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.25 
_cell.angle_gamma         90 
_cell.entry_id            7FK4 
_cell.length_a            89.237 
_cell.length_b            82.114 
_cell.length_c            93.482 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7FK4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C11 H16 N2 O S' 
_chem_comp.formula_weight    224.323 
_chem_comp.id                VNN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4-methylpiperazin-1-yl)(5-methylthiophen-3-yl)methanone 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 VNN sing 376 n n 
S C1 VNN sing 377 n y 
S C4 VNN sing 378 n y 
C1 C2 VNN doub 379 n y 
C4 C3 VNN doub 380 n y 
C2 C3 VNN sing 381 n y 
C3 C5 VNN sing 382 n n 
C5 O VNN doub 383 n n 
C5 N VNN sing 384 n n 
C9 N VNN sing 385 n n 
C9 C8 VNN sing 386 n n 
N C6 VNN sing 387 n n 
C7 C6 VNN sing 388 n n 
C7 N1 VNN sing 389 n n 
C10 N1 VNN sing 390 n n 
C8 N1 VNN sing 391 n n 
C7 H2 VNN sing 392 n n 
C7 H3 VNN sing 393 n n 
C8 H4 VNN sing 394 n n 
C8 H5 VNN sing 395 n n 
C9 H6 VNN sing 396 n n 
C9 H7 VNN sing 397 n n 
C6 H8 VNN sing 398 n n 
C6 H9 VNN sing 399 n n 
C4 H10 VNN sing 400 n n 
C2 H11 VNN sing 401 n n 
C H12 VNN sing 402 n n 
C H13 VNN sing 403 n n 
C H14 VNN sing 404 n n 
C10 H15 VNN sing 405 n n 
C10 H16 VNN sing 406 n n 
C10 H17 VNN sing 407 n n 
#
_atom_sites.entry_id                     7FK4 
_atom_sites.fract_transf_matrix[1][1]    0.011206 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003695 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012178 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011264 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 VNN A 1 2101 2101 VNN XXX . 
D 3 VNN B 1 401 401 VNN XXX . 
E 4 HOH A 1 2201 93 HOH HOH . 
E 4 HOH A 2 2202 3 HOH HOH . 
E 4 HOH A 3 2203 58 HOH HOH . 
E 4 HOH A 4 2204 80 HOH HOH . 
E 4 HOH A 5 2205 38 HOH HOH . 
E 4 HOH A 6 2206 39 HOH HOH . 
E 4 HOH A 7 2207 27 HOH HOH . 
E 4 HOH A 8 2208 21 HOH HOH . 
E 4 HOH A 9 2209 40 HOH HOH . 
E 4 HOH A 10 2210 25 HOH HOH . 
E 4 HOH A 11 2211 72 HOH HOH . 
E 4 HOH A 12 2212 10 HOH HOH . 
E 4 HOH A 13 2213 43 HOH HOH . 
E 4 HOH A 14 2214 59 HOH HOH . 
E 4 HOH A 15 2215 41 HOH HOH . 
E 4 HOH A 16 2216 54 HOH HOH . 
E 4 HOH A 17 2217 12 HOH HOH . 
E 4 HOH A 18 2218 34 HOH HOH . 
E 4 HOH A 19 2219 11 HOH HOH . 
E 4 HOH A 20 2220 2 HOH HOH . 
E 4 HOH A 21 2221 8 HOH HOH . 
E 4 HOH A 22 2222 45 HOH HOH . 
E 4 HOH A 23 2223 19 HOH HOH . 
E 4 HOH A 24 2224 63 HOH HOH . 
E 4 HOH A 25 2225 88 HOH HOH . 
E 4 HOH A 26 2226 42 HOH HOH . 
E 4 HOH A 27 2227 71 HOH HOH . 
E 4 HOH A 28 2228 46 HOH HOH . 
E 4 HOH A 29 2229 16 HOH HOH . 
E 4 HOH A 30 2230 70 HOH HOH . 
E 4 HOH A 31 2231 77 HOH HOH . 
E 4 HOH A 32 2232 69 HOH HOH . 
E 4 HOH A 33 2233 28 HOH HOH . 
E 4 HOH A 34 2234 74 HOH HOH . 
E 4 HOH A 35 2235 82 HOH HOH . 
E 4 HOH A 36 2236 47 HOH HOH . 
E 4 HOH A 37 2237 9 HOH HOH . 
E 4 HOH A 38 2238 87 HOH HOH . 
E 4 HOH A 39 2239 67 HOH HOH . 
E 4 HOH A 40 2240 5 HOH HOH . 
E 4 HOH A 41 2241 78 HOH HOH . 
E 4 HOH A 42 2242 75 HOH HOH . 
E 4 HOH A 43 2243 68 HOH HOH . 
E 4 HOH A 44 2244 24 HOH HOH . 
E 4 HOH A 45 2245 65 HOH HOH . 
E 4 HOH A 46 2246 23 HOH HOH . 
E 4 HOH A 47 2247 73 HOH HOH . 
E 4 HOH A 48 2248 22 HOH HOH . 
E 4 HOH A 49 2249 85 HOH HOH . 
F 4 HOH B 1 501 89 HOH HOH . 
F 4 HOH B 2 502 81 HOH HOH . 
F 4 HOH B 3 503 30 HOH HOH . 
F 4 HOH B 4 504 44 HOH HOH . 
F 4 HOH B 5 505 96 HOH HOH . 
F 4 HOH B 6 506 56 HOH HOH . 
F 4 HOH B 7 507 57 HOH HOH . 
F 4 HOH B 8 508 26 HOH HOH . 
F 4 HOH B 9 509 92 HOH HOH . 
F 4 HOH B 10 510 91 HOH HOH . 
F 4 HOH B 11 511 15 HOH HOH . 
F 4 HOH B 12 512 79 HOH HOH . 
F 4 HOH B 13 513 83 HOH HOH . 
F 4 HOH B 14 514 55 HOH HOH . 
F 4 HOH B 15 515 61 HOH HOH . 
F 4 HOH B 16 516 20 HOH HOH . 
F 4 HOH B 17 517 35 HOH HOH . 
F 4 HOH B 18 518 31 HOH HOH . 
F 4 HOH B 19 519 13 HOH HOH . 
F 4 HOH B 20 520 51 HOH HOH . 
F 4 HOH B 21 521 33 HOH HOH . 
F 4 HOH B 22 522 60 HOH HOH . 
F 4 HOH B 23 523 17 HOH HOH . 
F 4 HOH B 24 524 32 HOH HOH . 
F 4 HOH B 25 525 7 HOH HOH . 
F 4 HOH B 26 526 52 HOH HOH . 
F 4 HOH B 27 527 86 HOH HOH . 
F 4 HOH B 28 528 66 HOH HOH . 
F 4 HOH B 29 529 14 HOH HOH . 
F 4 HOH B 30 530 62 HOH HOH . 
F 4 HOH B 31 531 49 HOH HOH . 
F 4 HOH B 32 532 6 HOH HOH . 
F 4 HOH B 33 533 18 HOH HOH . 
F 4 HOH B 34 534 64 HOH HOH . 
F 4 HOH B 35 535 76 HOH HOH . 
F 4 HOH B 36 536 36 HOH HOH . 
F 4 HOH B 37 537 29 HOH HOH . 
F 4 HOH B 38 538 90 HOH HOH . 
F 4 HOH B 39 539 37 HOH HOH . 
F 4 HOH B 40 540 4 HOH HOH . 
F 4 HOH B 41 541 94 HOH HOH . 
F 4 HOH B 42 542 50 HOH HOH . 
F 4 HOH B 43 543 48 HOH HOH . 
F 4 HOH B 44 544 53 HOH HOH . 
F 4 HOH B 45 545 95 HOH HOH . 
F 4 HOH B 46 546 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 VNN . . . C 3 26.354 18.98 43.812 0.26 20 1 N1 VNN 2101 A 1 
HETATM 2 C C7 VNN . . . C 3 26.544 17.777 42.88 0.26 20 0 C7 VNN 2101 A 1 
HETATM 3 C C8 VNN . . . C 3 27.582 19.899 43.795 0.26 20 0 C8 VNN 2101 A 1 
HETATM 4 C C9 VNN . . . C 3 28.431 19.591 42.542 0.26 20 0 C9 VNN 2101 A 1 
HETATM 5 C C1 VNN . . . C 3 27.813 16.512 38.832 0.26 20 0 C1 VNN 2101 A 1 
HETATM 6 C C5 VNN . . . C 3 29.895 17.858 41.545 0.26 20 0 C5 VNN 2101 A 1 
HETATM 7 C C6 VNN . . . C 3 27.991 17.228 43.004 0.26 20 0 C6 VNN 2101 A 1 
HETATM 8 C C4 VNN . . . C 3 30.117 16.489 39.557 0.26 20 0 C4 VNN 2101 A 1 
HETATM 9 C C3 VNN . . . C 3 29.341 17.225 40.378 0.26 20 0 C3 VNN 2101 A 1 
HETATM 10 C C2 VNN . . . C 3 27.976 17.255 39.961 0.26 20 0 C2 VNN 2101 A 1 
HETATM 11 O O VNN . . . C 3 31.069 18.077 41.704 0.26 20 0 O VNN 2101 A 1 
HETATM 12 S S VNN . . . C 3 29.269 15.82 38.299 0.26 20 0 S VNN 2101 A 1 
HETATM 13 C C VNN . . . C 3 26.557 16.272 38.118 0.26 20 0 C VNN 2101 A 1 
HETATM 14 N N VNN . . . C 3 28.971 18.232 42.584 0.26 20 0 N VNN 2101 A 1 
HETATM 15 C C10 VNN . . . C 3 25.11 19.759 43.419 0.26 20 0 C10 VNN 2101 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           15 
#