data_7FK5 # _model_server_result.job_id l7EnPS6c6ZyNOsO9mCZNtA _model_server_result.datetime_utc '2024-10-10 17:19:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fk5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7FK5 # _exptl.entry_id 7FK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 190.199 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-5-methyl-5-phenylimidazolidine-2,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.29 _cell.angle_gamma 90 _cell.entry_id 7FK5 _cell.length_a 89.045 _cell.length_b 82.036 _cell.length_c 93.428 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C10 H10 N2 O2' _chem_comp.formula_weight 190.199 _chem_comp.id V3F _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-5-methyl-5-phenylimidazolidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C3 V3F doub 358 n n C3 N1 V3F sing 359 n n C3 N V3F sing 360 n n N1 C1 V3F sing 361 n n C C1 V3F sing 362 n n C1 C2 V3F sing 363 n n C1 C4 V3F sing 364 n n N C2 V3F sing 365 n n C2 O V3F doub 366 n n C4 C9 V3F doub 367 n y C4 C5 V3F sing 368 n y C9 C8 V3F sing 369 n y C5 C6 V3F doub 370 n y C8 C7 V3F doub 371 n y C6 C7 V3F sing 372 n y N1 H1 V3F sing 373 n n C7 H2 V3F sing 374 n n C8 H3 V3F sing 375 n n C9 H4 V3F sing 376 n n C5 H5 V3F sing 377 n n C6 H6 V3F sing 378 n n N H7 V3F sing 379 n n C H8 V3F sing 380 n n C H9 V3F sing 381 n n C H10 V3F sing 382 n n # _atom_sites.entry_id 7FK5 _atom_sites.fract_transf_matrix[1][1] 0.01123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003712 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V3F B 1 401 401 V3F XXX . D 3 V3F B 1 402 501 V3F XXX . E 4 HOH A 1 2101 66 HOH HOH . E 4 HOH A 2 2102 4 HOH HOH . E 4 HOH A 3 2103 83 HOH HOH . E 4 HOH A 4 2104 105 HOH HOH . E 4 HOH A 5 2105 29 HOH HOH . E 4 HOH A 6 2106 92 HOH HOH . E 4 HOH A 7 2107 9 HOH HOH . E 4 HOH A 8 2108 93 HOH HOH . E 4 HOH A 9 2109 31 HOH HOH . E 4 HOH A 10 2110 80 HOH HOH . E 4 HOH A 11 2111 15 HOH HOH . E 4 HOH A 12 2112 98 HOH HOH . E 4 HOH A 13 2113 18 HOH HOH . E 4 HOH A 14 2114 53 HOH HOH . E 4 HOH A 15 2115 118 HOH HOH . E 4 HOH A 16 2116 63 HOH HOH . E 4 HOH A 17 2117 106 HOH HOH . E 4 HOH A 18 2118 81 HOH HOH . E 4 HOH A 19 2119 13 HOH HOH . E 4 HOH A 20 2120 100 HOH HOH . E 4 HOH A 21 2121 10 HOH HOH . E 4 HOH A 22 2122 102 HOH HOH . E 4 HOH A 23 2123 64 HOH HOH . E 4 HOH A 24 2124 50 HOH HOH . E 4 HOH A 25 2125 114 HOH HOH . E 4 HOH A 26 2126 32 HOH HOH . E 4 HOH A 27 2127 46 HOH HOH . E 4 HOH A 28 2128 27 HOH HOH . E 4 HOH A 29 2129 34 HOH HOH . E 4 HOH A 30 2130 79 HOH HOH . E 4 HOH A 31 2131 49 HOH HOH . E 4 HOH A 32 2132 21 HOH HOH . E 4 HOH A 33 2133 19 HOH HOH . E 4 HOH A 34 2134 65 HOH HOH . E 4 HOH A 35 2135 82 HOH HOH . E 4 HOH A 36 2136 24 HOH HOH . E 4 HOH A 37 2137 5 HOH HOH . E 4 HOH A 38 2138 71 HOH HOH . E 4 HOH A 39 2139 86 HOH HOH . E 4 HOH A 40 2140 70 HOH HOH . E 4 HOH A 41 2141 84 HOH HOH . E 4 HOH A 42 2142 48 HOH HOH . E 4 HOH A 43 2143 11 HOH HOH . E 4 HOH A 44 2144 43 HOH HOH . E 4 HOH A 45 2145 54 HOH HOH . E 4 HOH A 46 2146 16 HOH HOH . E 4 HOH A 47 2147 73 HOH HOH . E 4 HOH A 48 2148 77 HOH HOH . E 4 HOH A 49 2149 96 HOH HOH . E 4 HOH A 50 2150 99 HOH HOH . E 4 HOH A 51 2151 51 HOH HOH . E 4 HOH A 52 2152 90 HOH HOH . E 4 HOH A 53 2153 3 HOH HOH . E 4 HOH A 54 2154 25 HOH HOH . E 4 HOH A 55 2155 20 HOH HOH . E 4 HOH A 56 2156 47 HOH HOH . E 4 HOH A 57 2157 101 HOH HOH . E 4 HOH A 58 2158 110 HOH HOH . E 4 HOH A 59 2159 95 HOH HOH . F 4 HOH B 1 501 39 HOH HOH . F 4 HOH B 2 502 75 HOH HOH . F 4 HOH B 3 503 72 HOH HOH . F 4 HOH B 4 504 57 HOH HOH . F 4 HOH B 5 505 117 HOH HOH . F 4 HOH B 6 506 62 HOH HOH . F 4 HOH B 7 507 8 HOH HOH . F 4 HOH B 8 508 116 HOH HOH . F 4 HOH B 9 509 103 HOH HOH . F 4 HOH B 10 510 60 HOH HOH . F 4 HOH B 11 511 91 HOH HOH . F 4 HOH B 12 512 121 HOH HOH . F 4 HOH B 13 513 36 HOH HOH . F 4 HOH B 14 514 26 HOH HOH . F 4 HOH B 15 515 35 HOH HOH . F 4 HOH B 16 516 42 HOH HOH . F 4 HOH B 17 517 56 HOH HOH . F 4 HOH B 18 518 59 HOH HOH . F 4 HOH B 19 519 69 HOH HOH . F 4 HOH B 20 520 7 HOH HOH . F 4 HOH B 21 521 107 HOH HOH . F 4 HOH B 22 522 44 HOH HOH . F 4 HOH B 23 523 14 HOH HOH . F 4 HOH B 24 524 119 HOH HOH . F 4 HOH B 25 525 122 HOH HOH . F 4 HOH B 26 526 104 HOH HOH . F 4 HOH B 27 527 67 HOH HOH . F 4 HOH B 28 528 23 HOH HOH . F 4 HOH B 29 529 28 HOH HOH . F 4 HOH B 30 530 108 HOH HOH . F 4 HOH B 31 531 38 HOH HOH . F 4 HOH B 32 532 97 HOH HOH . F 4 HOH B 33 533 58 HOH HOH . F 4 HOH B 34 534 37 HOH HOH . F 4 HOH B 35 535 33 HOH HOH . F 4 HOH B 36 536 41 HOH HOH . F 4 HOH B 37 537 109 HOH HOH . F 4 HOH B 38 538 30 HOH HOH . F 4 HOH B 39 539 94 HOH HOH . F 4 HOH B 40 540 52 HOH HOH . F 4 HOH B 41 541 40 HOH HOH . F 4 HOH B 42 542 22 HOH HOH . F 4 HOH B 43 543 88 HOH HOH . F 4 HOH B 44 544 12 HOH HOH . F 4 HOH B 45 545 61 HOH HOH . F 4 HOH B 46 546 76 HOH HOH . F 4 HOH B 47 547 2 HOH HOH . F 4 HOH B 48 548 115 HOH HOH . F 4 HOH B 49 549 68 HOH HOH . F 4 HOH B 50 550 87 HOH HOH . F 4 HOH B 51 551 113 HOH HOH . F 4 HOH B 52 552 55 HOH HOH . F 4 HOH B 53 553 17 HOH HOH . F 4 HOH B 54 554 111 HOH HOH . F 4 HOH B 55 555 89 HOH HOH . F 4 HOH B 56 556 6 HOH HOH . F 4 HOH B 57 557 74 HOH HOH . F 4 HOH B 58 558 85 HOH HOH . F 4 HOH B 59 559 112 HOH HOH . F 4 HOH B 60 560 120 HOH HOH . F 4 HOH B 61 561 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 V3F . . . D 3 25.511 18.917 -11.451 0.36 20 0 N1 V3F 402 B 1 HETATM 2 C C7 V3F . . . D 3 24.886 14.051 -12.621 0.36 20 0 C7 V3F 402 B 1 HETATM 3 C C8 V3F . . . D 3 24.03 14.949 -13.218 0.36 20 0 C8 V3F 402 B 1 HETATM 4 C C9 V3F . . . D 3 24.342 16.297 -13.251 0.36 20 0 C9 V3F 402 B 1 HETATM 5 O O1 V3F . . . D 3 24.171 20.661 -10.74 0.36 20 0 O1 V3F 402 B 1 HETATM 6 C C1 V3F . . . D 3 25.787 18.224 -12.704 0.36 20 0 C1 V3F 402 B 1 HETATM 7 C C5 V3F . . . D 3 26.387 15.852 -12.098 0.36 20 0 C5 V3F 402 B 1 HETATM 8 C C6 V3F . . . D 3 26.05 14.511 -12.068 0.36 20 0 C6 V3F 402 B 1 HETATM 9 C C4 V3F . . . D 3 25.524 16.755 -12.686 0.36 20 0 C4 V3F 402 B 1 HETATM 10 C C3 V3F . . . D 3 24.549 19.9 -11.6 0.36 20 0 C3 V3F 402 B 1 HETATM 11 C C2 V3F . . . D 3 24.808 18.891 -13.672 0.36 20 0 C2 V3F 402 B 1 HETATM 12 N N V3F . . . D 3 24.114 19.883 -12.955 0.36 20 0 N V3F 402 B 1 HETATM 13 O O V3F . . . D 3 24.637 18.63 -14.836 0.36 20 0 O V3F 402 B 1 HETATM 14 C C V3F . . . D 3 27.213 18.536 -13.119 0.36 20 0 C V3F 402 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #