data_7FKC # _model_server_result.job_id J-YTPYsxmdjHpLPsr2XZmw _model_server_result.datetime_utc '2024-11-15 05:40:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fkc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7FKC # _exptl.entry_id 7FKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 179.219 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N,N~2~-dimethyl-N-(pyridin-2-yl)glycinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.28 _cell.angle_gamma 90 _cell.entry_id 7FKC _cell.length_a 89.298 _cell.length_b 81.97 _cell.length_c 93.284 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H13 N3 O' _chem_comp.formula_weight 179.219 _chem_comp.id V7L _chem_comp.mon_nstd_flag . _chem_comp.name N,N~2~-dimethyl-N-(pyridin-2-yl)glycinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 V7L doub 358 n y C7 C6 V7L sing 359 n y C8 N2 V7L sing 360 n y C6 C5 V7L doub 361 n y N2 C4 V7L doub 362 n y C5 C4 V7L sing 363 n y C4 N1 V7L sing 364 n n N1 C3 V7L sing 365 n n N1 C2 V7L sing 366 n n C2 O V7L doub 367 n n C2 C1 V7L sing 368 n n N C1 V7L sing 369 n n N C V7L sing 370 n n C7 H1 V7L sing 371 n n C8 H2 V7L sing 372 n n C1 H3 V7L sing 373 n n C1 H4 V7L sing 374 n n C5 H5 V7L sing 375 n n C6 H6 V7L sing 376 n n C3 H7 V7L sing 377 n n C3 H8 V7L sing 378 n n C3 H9 V7L sing 379 n n N H10 V7L sing 380 n n C H12 V7L sing 381 n n C H13 V7L sing 382 n n C H14 V7L sing 383 n n # _atom_sites.entry_id 7FKC _atom_sites.fract_transf_matrix[1][1] 0.011198 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003699 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V7L B 1 401 401 V7L XXX . D 4 HOH A 1 2101 117 HOH HOH . D 4 HOH A 2 2102 116 HOH HOH . D 4 HOH A 3 2103 100 HOH HOH . D 4 HOH A 4 2104 70 HOH HOH . D 4 HOH A 5 2105 98 HOH HOH . D 4 HOH A 6 2106 2 HOH HOH . D 4 HOH A 7 2107 52 HOH HOH . D 4 HOH A 8 2108 105 HOH HOH . D 4 HOH A 9 2109 38 HOH HOH . D 4 HOH A 10 2110 33 HOH HOH . D 4 HOH A 11 2111 25 HOH HOH . D 4 HOH A 12 2112 7 HOH HOH . D 4 HOH A 13 2113 47 HOH HOH . D 4 HOH A 14 2114 30 HOH HOH . D 4 HOH A 15 2115 44 HOH HOH . D 4 HOH A 16 2116 12 HOH HOH . D 4 HOH A 17 2117 51 HOH HOH . D 4 HOH A 18 2118 22 HOH HOH . D 4 HOH A 19 2119 50 HOH HOH . D 4 HOH A 20 2120 43 HOH HOH . D 4 HOH A 21 2121 62 HOH HOH . D 4 HOH A 22 2122 113 HOH HOH . D 4 HOH A 23 2123 84 HOH HOH . D 4 HOH A 24 2124 78 HOH HOH . D 4 HOH A 25 2125 96 HOH HOH . D 4 HOH A 26 2126 14 HOH HOH . D 4 HOH A 27 2127 27 HOH HOH . D 4 HOH A 28 2128 66 HOH HOH . D 4 HOH A 29 2129 57 HOH HOH . D 4 HOH A 30 2130 72 HOH HOH . D 4 HOH A 31 2131 55 HOH HOH . D 4 HOH A 32 2132 90 HOH HOH . D 4 HOH A 33 2133 69 HOH HOH . D 4 HOH A 34 2134 16 HOH HOH . D 4 HOH A 35 2135 95 HOH HOH . D 4 HOH A 36 2136 3 HOH HOH . D 4 HOH A 37 2137 92 HOH HOH . D 4 HOH A 38 2138 42 HOH HOH . D 4 HOH A 39 2139 17 HOH HOH . D 4 HOH A 40 2140 87 HOH HOH . D 4 HOH A 41 2141 82 HOH HOH . D 4 HOH A 42 2142 68 HOH HOH . D 4 HOH A 43 2143 59 HOH HOH . D 4 HOH A 44 2144 54 HOH HOH . D 4 HOH A 45 2145 107 HOH HOH . D 4 HOH A 46 2146 21 HOH HOH . D 4 HOH A 47 2147 5 HOH HOH . D 4 HOH A 48 2148 81 HOH HOH . D 4 HOH A 49 2149 91 HOH HOH . D 4 HOH A 50 2150 34 HOH HOH . D 4 HOH A 51 2151 31 HOH HOH . D 4 HOH A 52 2152 28 HOH HOH . D 4 HOH A 53 2153 108 HOH HOH . D 4 HOH A 54 2154 93 HOH HOH . D 4 HOH A 55 2155 79 HOH HOH . D 4 HOH A 56 2156 60 HOH HOH . D 4 HOH A 57 2157 94 HOH HOH . D 4 HOH A 58 2158 63 HOH HOH . D 4 HOH A 59 2159 102 HOH HOH . D 4 HOH A 60 2160 106 HOH HOH . D 4 HOH A 61 2161 110 HOH HOH . D 4 HOH A 62 2162 99 HOH HOH . E 4 HOH B 1 501 101 HOH HOH . E 4 HOH B 2 502 4 HOH HOH . E 4 HOH B 3 503 74 HOH HOH . E 4 HOH B 4 504 71 HOH HOH . E 4 HOH B 5 505 58 HOH HOH . E 4 HOH B 6 506 83 HOH HOH . E 4 HOH B 7 507 77 HOH HOH . E 4 HOH B 8 508 6 HOH HOH . E 4 HOH B 9 509 53 HOH HOH . E 4 HOH B 10 510 40 HOH HOH . E 4 HOH B 11 511 76 HOH HOH . E 4 HOH B 12 512 67 HOH HOH . E 4 HOH B 13 513 10 HOH HOH . E 4 HOH B 14 514 41 HOH HOH . E 4 HOH B 15 515 32 HOH HOH . E 4 HOH B 16 516 24 HOH HOH . E 4 HOH B 17 517 8 HOH HOH . E 4 HOH B 18 518 86 HOH HOH . E 4 HOH B 19 519 97 HOH HOH . E 4 HOH B 20 520 103 HOH HOH . E 4 HOH B 21 521 45 HOH HOH . E 4 HOH B 22 522 89 HOH HOH . E 4 HOH B 23 523 80 HOH HOH . E 4 HOH B 24 524 29 HOH HOH . E 4 HOH B 25 525 23 HOH HOH . E 4 HOH B 26 526 18 HOH HOH . E 4 HOH B 27 527 11 HOH HOH . E 4 HOH B 28 528 15 HOH HOH . E 4 HOH B 29 529 61 HOH HOH . E 4 HOH B 30 530 75 HOH HOH . E 4 HOH B 31 531 56 HOH HOH . E 4 HOH B 32 532 73 HOH HOH . E 4 HOH B 33 533 35 HOH HOH . E 4 HOH B 34 534 64 HOH HOH . E 4 HOH B 35 535 9 HOH HOH . E 4 HOH B 36 536 19 HOH HOH . E 4 HOH B 37 537 104 HOH HOH . E 4 HOH B 38 538 49 HOH HOH . E 4 HOH B 39 539 26 HOH HOH . E 4 HOH B 40 540 46 HOH HOH . E 4 HOH B 41 541 37 HOH HOH . E 4 HOH B 42 542 20 HOH HOH . E 4 HOH B 43 543 119 HOH HOH . E 4 HOH B 44 544 115 HOH HOH . E 4 HOH B 45 545 39 HOH HOH . E 4 HOH B 46 546 112 HOH HOH . E 4 HOH B 47 547 13 HOH HOH . E 4 HOH B 48 548 36 HOH HOH . E 4 HOH B 49 549 88 HOH HOH . E 4 HOH B 50 550 85 HOH HOH . E 4 HOH B 51 551 65 HOH HOH . E 4 HOH B 52 552 114 HOH HOH . E 4 HOH B 53 553 111 HOH HOH . E 4 HOH B 54 554 118 HOH HOH . E 4 HOH B 55 555 48 HOH HOH . E 4 HOH B 56 556 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 V7L . . . C 3 13.868 12.274 -43.108 0.28 20 0 N1 V7L 401 B 1 HETATM 2 C C7 V7L . . . C 3 15.644 11.858 -46.777 0.28 20 0 C7 V7L 401 B 1 HETATM 3 C C8 V7L . . . C 3 15.34 13.102 -46.226 0.28 20 0 C8 V7L 401 B 1 HETATM 4 N N2 V7L . . . C 3 14.791 13.25 -45.026 0.28 20 0 N2 V7L 401 B 1 HETATM 5 C C1 V7L . . . C 3 15.128 12.52 -41.064 0.28 20 0 C1 V7L 401 B 1 HETATM 6 C C5 V7L . . . C 3 14.807 10.848 -44.795 0.28 20 0 C5 V7L 401 B 1 HETATM 7 C C6 V7L . . . C 3 15.377 10.727 -46.049 0.28 20 0 C6 V7L 401 B 1 HETATM 8 C C4 V7L . . . C 3 14.53 12.114 -44.354 0.28 20 0 C4 V7L 401 B 1 HETATM 9 C C3 V7L . . . C 3 13.369 13.598 -42.835 0.28 20 0 C3 V7L 401 B 1 HETATM 10 C C2 V7L . . . C 3 14.404 11.624 -42.084 0.28 20 0 C2 V7L 401 B 1 HETATM 11 O O V7L . . . C 3 14.335 10.427 -41.927 0.28 20 0 O V7L 401 B 1 HETATM 12 N N V7L . . . C 3 16.621 12.424 -41.312 0.28 20 1 N V7L 401 B 1 HETATM 13 C C V7L . . . C 3 17.372 12.663 -40.022 0.28 20 0 C V7L 401 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #