data_7FL5 # _model_server_result.job_id EczlAQEB6Q5mQMVEFqKwdg _model_server_result.datetime_utc '2025-03-13 12:44:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fl5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7FL5 # _exptl.entry_id 7FL5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 280.164 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-(4-bromophenyl)(piperazin-1-yl)acetonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.43 _cell.angle_gamma 90 _cell.entry_id 7FL5 _cell.length_a 89.67 _cell.length_b 81.669 _cell.length_c 92.929 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FL5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H14 Br N3' _chem_comp.formula_weight 280.164 _chem_comp.id V0C _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-(4-bromophenyl)(piperazin-1-yl)acetonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR C2 V0C sing 358 n n N C7 V0C trip 359 n n C1 C V0C doub 360 n y C1 C2 V0C sing 361 n y C C5 V0C sing 362 n y C2 C3 V0C doub 363 n y C7 C6 V0C sing 364 n n C5 C6 V0C sing 365 n n C5 C4 V0C doub 366 n y C3 C4 V0C sing 367 n y C6 N1 V0C sing 368 n n C11 N1 V0C sing 369 n n C11 C10 V0C sing 370 n n N1 C8 V0C sing 371 n n C8 C9 V0C sing 372 n n C10 N2 V0C sing 373 n n C9 N2 V0C sing 374 n n C8 H8 V0C sing 375 n n C8 H7 V0C sing 376 n n N2 H2 V0C sing 377 n n C9 H10 V0C sing 378 n n C9 H9 V0C sing 379 n n C1 H4 V0C sing 380 n n C6 H V0C sing 381 n n C4 H6 V0C sing 382 n n C3 H5 V0C sing 383 n n C H3 V0C sing 384 n n C11 H14 V0C sing 385 n n C11 H13 V0C sing 386 n n C10 H11 V0C sing 387 n n C10 H12 V0C sing 388 n n # _atom_sites.entry_id 7FL5 _atom_sites.fract_transf_matrix[1][1] 0.011152 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003716 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V0C B 1 401 401 V0C XXX . D 4 HOH A 1 2101 32 HOH HOH . D 4 HOH A 2 2102 58 HOH HOH . D 4 HOH A 3 2103 23 HOH HOH . D 4 HOH A 4 2104 31 HOH HOH . D 4 HOH A 5 2105 7 HOH HOH . D 4 HOH A 6 2106 18 HOH HOH . D 4 HOH A 7 2107 21 HOH HOH . D 4 HOH A 8 2108 11 HOH HOH . D 4 HOH A 9 2109 54 HOH HOH . D 4 HOH A 10 2110 3 HOH HOH . D 4 HOH A 11 2111 56 HOH HOH . D 4 HOH A 12 2112 14 HOH HOH . D 4 HOH A 13 2113 10 HOH HOH . D 4 HOH A 14 2114 48 HOH HOH . D 4 HOH A 15 2115 35 HOH HOH . D 4 HOH A 16 2116 61 HOH HOH . D 4 HOH A 17 2117 65 HOH HOH . D 4 HOH A 18 2118 8 HOH HOH . D 4 HOH A 19 2119 26 HOH HOH . D 4 HOH A 20 2120 30 HOH HOH . D 4 HOH A 21 2121 28 HOH HOH . D 4 HOH A 22 2122 16 HOH HOH . D 4 HOH A 23 2123 41 HOH HOH . D 4 HOH A 24 2124 55 HOH HOH . D 4 HOH A 25 2125 17 HOH HOH . D 4 HOH A 26 2126 34 HOH HOH . D 4 HOH A 27 2127 37 HOH HOH . D 4 HOH A 28 2128 49 HOH HOH . D 4 HOH A 29 2129 46 HOH HOH . D 4 HOH A 30 2130 13 HOH HOH . D 4 HOH A 31 2131 62 HOH HOH . D 4 HOH A 32 2132 33 HOH HOH . D 4 HOH A 33 2133 63 HOH HOH . D 4 HOH A 34 2134 66 HOH HOH . E 4 HOH B 1 501 2 HOH HOH . E 4 HOH B 2 502 51 HOH HOH . E 4 HOH B 3 503 19 HOH HOH . E 4 HOH B 4 504 38 HOH HOH . E 4 HOH B 5 505 44 HOH HOH . E 4 HOH B 6 506 29 HOH HOH . E 4 HOH B 7 507 53 HOH HOH . E 4 HOH B 8 508 15 HOH HOH . E 4 HOH B 9 509 42 HOH HOH . E 4 HOH B 10 510 40 HOH HOH . E 4 HOH B 11 511 47 HOH HOH . E 4 HOH B 12 512 12 HOH HOH . E 4 HOH B 13 513 45 HOH HOH . E 4 HOH B 14 514 60 HOH HOH . E 4 HOH B 15 515 50 HOH HOH . E 4 HOH B 16 516 57 HOH HOH . E 4 HOH B 17 517 67 HOH HOH . E 4 HOH B 18 518 25 HOH HOH . E 4 HOH B 19 519 22 HOH HOH . E 4 HOH B 20 520 4 HOH HOH . E 4 HOH B 21 521 36 HOH HOH . E 4 HOH B 22 522 59 HOH HOH . E 4 HOH B 23 523 9 HOH HOH . E 4 HOH B 24 524 27 HOH HOH . E 4 HOH B 25 525 43 HOH HOH . E 4 HOH B 26 526 20 HOH HOH . E 4 HOH B 27 527 64 HOH HOH . E 4 HOH B 28 528 6 HOH HOH . E 4 HOH B 29 529 5 HOH HOH . E 4 HOH B 30 530 24 HOH HOH . E 4 HOH B 31 531 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 V0C . . . C 3 26.915 18.958 -10.234 1 30 0 N1 V0C 401 B 1 HETATM 2 C C7 V0C . . . C 3 28.083 18.984 -12.419 1 30 0 C7 V0C 401 B 1 HETATM 3 C C8 V0C . . . C 3 27.566 20.259 -10.062 1 30 0 C8 V0C 401 B 1 HETATM 4 N N2 V0C . . . C 3 25.7 20.497 -8.476 1 30 0 N2 V0C 401 B 1 HETATM 5 C C9 V0C . . . C 3 27.131 20.815 -8.727 1 30 0 C9 V0C 401 B 1 HETATM 6 C C1 V0C . . . C 3 24.862 16.264 -13.158 1 30 0 C1 V0C 401 B 1 HETATM 7 C C5 V0C . . . C 3 26.625 17.049 -11.715 1 30 0 C5 V0C 401 B 1 HETATM 8 C C6 V0C . . . C 3 27.574 18.16 -11.283 1 30 0 C6 V0C 401 B 1 HETATM 9 C C4 V0C . . . C 3 26.727 15.768 -11.193 1 30 0 C4 V0C 401 B 1 HETATM 10 C C3 V0C . . . C 3 25.931 14.74 -11.66 1 30 0 C3 V0C 401 B 1 HETATM 11 C C2 V0C . . . C 3 25.013 15.006 -12.645 1 30 0 C2 V0C 401 B 1 HETATM 12 BR BR V0C . . . C 3 23.943 13.605 -13.335 1 30 0 BR V0C 401 B 1 HETATM 13 C C V0C . . . C 3 25.672 17.28 -12.696 1 30 0 C V0C 401 B 1 HETATM 14 N N V0C . . . C 3 28.438 19.59 -13.315 1 30 0 N V0C 401 B 1 HETATM 15 C C11 V0C . . . C 3 25.494 19.157 -10.527 1 30 0 C11 V0C 401 B 1 HETATM 16 C C10 V0C . . . C 3 24.949 20.329 -9.748 1 30 0 C10 V0C 401 B 1 HETATM 17 H H1 V0C . . . C 3 25.283 21.249 -7.937 1 30 0 H1 V0C 401 B 1 HETATM 18 H H8 V0C . . . C 3 27.231 20.943 -10.841 1 30 0 H8 V0C 401 B 1 HETATM 19 H H7 V0C . . . C 3 28.651 20.257 -10.155 1 30 0 H7 V0C 401 B 1 HETATM 20 H H2 V0C . . . C 3 25.629 19.655 -7.914 1 30 0 H2 V0C 401 B 1 HETATM 21 H H10 V0C . . . C 3 27.272 21.894 -8.692 1 30 0 H10 V0C 401 B 1 HETATM 22 H H9 V0C . . . C 3 27.748 20.419 -7.922 1 30 0 H9 V0C 401 B 1 HETATM 23 H H4 V0C . . . C 3 24.11 16.459 -13.92 1 30 0 H4 V0C 401 B 1 HETATM 24 H H V0C . . . C 3 28.45 17.689 -10.839 1 30 0 H V0C 401 B 1 HETATM 25 H H6 V0C . . . C 3 27.442 15.548 -10.401 1 30 0 H6 V0C 401 B 1 HETATM 26 H H5 V0C . . . C 3 26.034 13.738 -11.247 1 30 0 H5 V0C 401 B 1 HETATM 27 H H3 V0C . . . C 3 25.503 18.248 -13.166 1 30 0 H3 V0C 401 B 1 HETATM 28 H H14 V0C . . . C 3 24.869 18.275 -10.392 1 30 0 H14 V0C 401 B 1 HETATM 29 H H13 V0C . . . C 3 25.37 19.416 -11.577 1 30 0 H13 V0C 401 B 1 HETATM 30 H H11 V0C . . . C 3 23.892 20.187 -9.527 1 30 0 H11 V0C 401 B 1 HETATM 31 H H12 V0C . . . C 3 24.993 21.244 -10.337 1 30 0 H12 V0C 401 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #