data_7FL6 # _model_server_result.job_id UP2cdpWnZu6_kRk-6ol_1g _model_server_result.datetime_utc '2024-10-10 17:20:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fl6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2101}' # _entry.id 7FL6 # _exptl.entry_id 7FL6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.233 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl [(3S)-1,1-dioxo-1lambda~6~-thiolan-3-yl]acetate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.48 _cell.angle_gamma 90 _cell.entry_id 7FL6 _cell.length_a 89.532 _cell.length_b 81.618 _cell.length_c 93.139 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FL6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H12 O4 S' _chem_comp.formula_weight 192.233 _chem_comp.id VIK _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl [(3S)-1,1-dioxo-1lambda~6~-thiolan-3-yl]acetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 VIK sing 376 n n C4 C3 VIK sing 377 n n C5 S VIK sing 378 n n C3 C2 VIK sing 379 n n C3 C6 VIK sing 380 n n S O3 VIK doub 381 n n S O2 VIK doub 382 n n S C6 VIK sing 383 n n C2 C1 VIK sing 384 n n O C1 VIK sing 385 n n O C VIK sing 386 n n C1 O1 VIK doub 387 n n C5 H1 VIK sing 388 n n C5 H2 VIK sing 389 n n C6 H3 VIK sing 390 n n C6 H4 VIK sing 391 n n C4 H5 VIK sing 392 n n C4 H6 VIK sing 393 n n C3 H7 VIK sing 394 n n C2 H8 VIK sing 395 n n C2 H9 VIK sing 396 n n C H10 VIK sing 397 n n C H11 VIK sing 398 n n C H12 VIK sing 399 n n # _atom_sites.entry_id 7FL6 _atom_sites.fract_transf_matrix[1][1] 0.011169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003733 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VIK A 1 2101 2101 VIK XXX . D 4 HOH A 1 2201 96 HOH HOH . D 4 HOH A 2 2202 63 HOH HOH . D 4 HOH A 3 2203 112 HOH HOH . D 4 HOH A 4 2204 83 HOH HOH . D 4 HOH A 5 2205 28 HOH HOH . D 4 HOH A 6 2206 46 HOH HOH . D 4 HOH A 7 2207 3 HOH HOH . D 4 HOH A 8 2208 79 HOH HOH . D 4 HOH A 9 2209 44 HOH HOH . D 4 HOH A 10 2210 119 HOH HOH . D 4 HOH A 11 2211 93 HOH HOH . D 4 HOH A 12 2212 91 HOH HOH . D 4 HOH A 13 2213 77 HOH HOH . D 4 HOH A 14 2214 33 HOH HOH . D 4 HOH A 15 2215 42 HOH HOH . D 4 HOH A 16 2216 22 HOH HOH . D 4 HOH A 17 2217 51 HOH HOH . D 4 HOH A 18 2218 87 HOH HOH . D 4 HOH A 19 2219 97 HOH HOH . D 4 HOH A 20 2220 62 HOH HOH . D 4 HOH A 21 2221 68 HOH HOH . D 4 HOH A 22 2222 64 HOH HOH . D 4 HOH A 23 2223 7 HOH HOH . D 4 HOH A 24 2224 108 HOH HOH . D 4 HOH A 25 2225 94 HOH HOH . D 4 HOH A 26 2226 18 HOH HOH . D 4 HOH A 27 2227 40 HOH HOH . D 4 HOH A 28 2228 86 HOH HOH . D 4 HOH A 29 2229 120 HOH HOH . D 4 HOH A 30 2230 19 HOH HOH . D 4 HOH A 31 2231 10 HOH HOH . D 4 HOH A 32 2232 76 HOH HOH . D 4 HOH A 33 2233 11 HOH HOH . D 4 HOH A 34 2234 88 HOH HOH . D 4 HOH A 35 2235 107 HOH HOH . D 4 HOH A 36 2236 72 HOH HOH . D 4 HOH A 37 2237 12 HOH HOH . D 4 HOH A 38 2238 74 HOH HOH . D 4 HOH A 39 2239 48 HOH HOH . D 4 HOH A 40 2240 92 HOH HOH . D 4 HOH A 41 2241 5 HOH HOH . D 4 HOH A 42 2242 24 HOH HOH . D 4 HOH A 43 2243 29 HOH HOH . D 4 HOH A 44 2244 121 HOH HOH . D 4 HOH A 45 2245 8 HOH HOH . D 4 HOH A 46 2246 75 HOH HOH . D 4 HOH A 47 2247 69 HOH HOH . D 4 HOH A 48 2248 81 HOH HOH . D 4 HOH A 49 2249 89 HOH HOH . D 4 HOH A 50 2250 67 HOH HOH . D 4 HOH A 51 2251 38 HOH HOH . D 4 HOH A 52 2252 16 HOH HOH . D 4 HOH A 53 2253 71 HOH HOH . D 4 HOH A 54 2254 32 HOH HOH . D 4 HOH A 55 2255 50 HOH HOH . D 4 HOH A 56 2256 104 HOH HOH . D 4 HOH A 57 2257 85 HOH HOH . D 4 HOH A 58 2258 56 HOH HOH . D 4 HOH A 59 2259 13 HOH HOH . D 4 HOH A 60 2260 49 HOH HOH . D 4 HOH A 61 2261 2 HOH HOH . D 4 HOH A 62 2262 106 HOH HOH . D 4 HOH A 63 2263 101 HOH HOH . D 4 HOH A 64 2264 90 HOH HOH . E 4 HOH B 1 401 110 HOH HOH . E 4 HOH B 2 402 102 HOH HOH . E 4 HOH B 3 403 47 HOH HOH . E 4 HOH B 4 404 60 HOH HOH . E 4 HOH B 5 405 73 HOH HOH . E 4 HOH B 6 406 54 HOH HOH . E 4 HOH B 7 407 109 HOH HOH . E 4 HOH B 8 408 115 HOH HOH . E 4 HOH B 9 409 118 HOH HOH . E 4 HOH B 10 410 9 HOH HOH . E 4 HOH B 11 411 58 HOH HOH . E 4 HOH B 12 412 100 HOH HOH . E 4 HOH B 13 413 15 HOH HOH . E 4 HOH B 14 414 39 HOH HOH . E 4 HOH B 15 415 70 HOH HOH . E 4 HOH B 16 416 113 HOH HOH . E 4 HOH B 17 417 34 HOH HOH . E 4 HOH B 18 418 45 HOH HOH . E 4 HOH B 19 419 37 HOH HOH . E 4 HOH B 20 420 61 HOH HOH . E 4 HOH B 21 421 95 HOH HOH . E 4 HOH B 22 422 98 HOH HOH . E 4 HOH B 23 423 114 HOH HOH . E 4 HOH B 24 424 36 HOH HOH . E 4 HOH B 25 425 80 HOH HOH . E 4 HOH B 26 426 53 HOH HOH . E 4 HOH B 27 427 99 HOH HOH . E 4 HOH B 28 428 23 HOH HOH . E 4 HOH B 29 429 4 HOH HOH . E 4 HOH B 30 430 116 HOH HOH . E 4 HOH B 31 431 31 HOH HOH . E 4 HOH B 32 432 6 HOH HOH . E 4 HOH B 33 433 52 HOH HOH . E 4 HOH B 34 434 43 HOH HOH . E 4 HOH B 35 435 21 HOH HOH . E 4 HOH B 36 436 25 HOH HOH . E 4 HOH B 37 437 41 HOH HOH . E 4 HOH B 38 438 26 HOH HOH . E 4 HOH B 39 439 78 HOH HOH . E 4 HOH B 40 440 35 HOH HOH . E 4 HOH B 41 441 84 HOH HOH . E 4 HOH B 42 442 66 HOH HOH . E 4 HOH B 43 443 30 HOH HOH . E 4 HOH B 44 444 14 HOH HOH . E 4 HOH B 45 445 65 HOH HOH . E 4 HOH B 46 446 55 HOH HOH . E 4 HOH B 47 447 20 HOH HOH . E 4 HOH B 48 448 105 HOH HOH . E 4 HOH B 49 449 57 HOH HOH . E 4 HOH B 50 450 27 HOH HOH . E 4 HOH B 51 451 117 HOH HOH . E 4 HOH B 52 452 103 HOH HOH . E 4 HOH B 53 453 17 HOH HOH . E 4 HOH B 54 454 111 HOH HOH . E 4 HOH B 55 455 59 HOH HOH . E 4 HOH B 56 456 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 VIK . . . C 3 42.084 28.691 26.729 0.32 20 0 O1 VIK 2101 A 1 HETATM 2 C C1 VIK . . . C 3 41.562 28.278 25.74 0.32 20 0 C1 VIK 2101 A 1 HETATM 3 C C5 VIK . . . C 3 42.863 24.612 22.713 0.32 20 0 C5 VIK 2101 A 1 HETATM 4 C C6 VIK . . . C 3 41.887 25.224 24.88 0.32 20 0 C6 VIK 2101 A 1 HETATM 5 C C4 VIK . . . C 3 42.444 26.076 22.626 0.32 20 0 C4 VIK 2101 A 1 HETATM 6 C C3 VIK . . . C 3 41.714 26.442 23.939 0.32 20 0 C3 VIK 2101 A 1 HETATM 7 O O3 VIK . . . C 3 42.977 22.924 24.604 0.32 20 0 O3 VIK 2101 A 1 HETATM 8 C C2 VIK . . . C 3 42.273 27.751 24.517 0.32 20 0 C2 VIK 2101 A 1 HETATM 9 S S VIK . . . C 3 43.162 24.28 24.317 0.32 20 0 S VIK 2101 A 1 HETATM 10 O O2 VIK . . . C 3 44.337 24.878 24.722 0.32 20 0 O2 VIK 2101 A 1 HETATM 11 O O VIK . . . C 3 40.205 28.256 25.654 0.32 20 0 O VIK 2101 A 1 HETATM 12 C C VIK . . . C 3 39.447 28.74 26.746 0.32 20 0 C VIK 2101 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #