data_7FM3 # _model_server_result.job_id 7QiC8y_Ei0cdUxfN34F9AA _model_server_result.datetime_utc '2025-07-19 04:06:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fm3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7FM3 # _exptl.entry_id 7FM3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.204 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl 4,5,6,7-tetrahydro-2H-indazole-3-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.44 _cell.angle_gamma 90 _cell.entry_id 7FM3 _cell.length_a 89.006 _cell.length_b 81.923 _cell.length_c 93.772 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H12 N2 O2' _chem_comp.formula_weight 180.204 _chem_comp.id VSL _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl 4,5,6,7-tetrahydro-2H-indazole-3-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 VSL sing 376 n n C7 C8 VSL sing 377 n n C6 C5 VSL sing 378 n n C5 C4 VSL sing 379 n n C8 C3 VSL sing 380 n n C4 C3 VSL sing 381 n y C4 N VSL doub 382 n y C3 C2 VSL doub 383 n y N N1 VSL sing 384 n y O C VSL sing 385 n n O C1 VSL sing 386 n n C2 N1 VSL sing 387 n y C2 C1 VSL sing 388 n n C1 O1 VSL doub 389 n n N1 H1 VSL sing 390 n n C7 H2 VSL sing 391 n n C7 H3 VSL sing 392 n n C8 H4 VSL sing 393 n n C8 H5 VSL sing 394 n n C5 H6 VSL sing 395 n n C5 H7 VSL sing 396 n n C6 H8 VSL sing 397 n n C6 H9 VSL sing 398 n n C H10 VSL sing 399 n n C H11 VSL sing 400 n n C H12 VSL sing 401 n n # _atom_sites.entry_id 7FM3 _atom_sites.fract_transf_matrix[1][1] 0.011235 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003746 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VSL B 1 401 401 VSL XXX . D 4 HOH A 1 2101 69 HOH HOH . D 4 HOH A 2 2102 37 HOH HOH . D 4 HOH A 3 2103 8 HOH HOH . D 4 HOH A 4 2104 47 HOH HOH . D 4 HOH A 5 2105 18 HOH HOH . D 4 HOH A 6 2106 35 HOH HOH . D 4 HOH A 7 2107 39 HOH HOH . D 4 HOH A 8 2108 32 HOH HOH . D 4 HOH A 9 2109 5 HOH HOH . D 4 HOH A 10 2110 36 HOH HOH . D 4 HOH A 11 2111 40 HOH HOH . D 4 HOH A 12 2112 58 HOH HOH . D 4 HOH A 13 2113 70 HOH HOH . D 4 HOH A 14 2114 67 HOH HOH . D 4 HOH A 15 2115 52 HOH HOH . D 4 HOH A 16 2116 10 HOH HOH . D 4 HOH A 17 2117 13 HOH HOH . D 4 HOH A 18 2118 54 HOH HOH . D 4 HOH A 19 2119 19 HOH HOH . D 4 HOH A 20 2120 23 HOH HOH . D 4 HOH A 21 2121 28 HOH HOH . D 4 HOH A 22 2122 9 HOH HOH . D 4 HOH A 23 2123 26 HOH HOH . D 4 HOH A 24 2124 49 HOH HOH . D 4 HOH A 25 2125 34 HOH HOH . D 4 HOH A 26 2126 25 HOH HOH . D 4 HOH A 27 2127 7 HOH HOH . D 4 HOH A 28 2128 20 HOH HOH . D 4 HOH A 29 2129 11 HOH HOH . D 4 HOH A 30 2130 62 HOH HOH . D 4 HOH A 31 2131 41 HOH HOH . D 4 HOH A 32 2132 6 HOH HOH . D 4 HOH A 33 2133 29 HOH HOH . D 4 HOH A 34 2134 61 HOH HOH . E 4 HOH B 1 501 24 HOH HOH . E 4 HOH B 2 502 3 HOH HOH . E 4 HOH B 3 503 42 HOH HOH . E 4 HOH B 4 504 22 HOH HOH . E 4 HOH B 5 505 17 HOH HOH . E 4 HOH B 6 506 66 HOH HOH . E 4 HOH B 7 507 45 HOH HOH . E 4 HOH B 8 508 60 HOH HOH . E 4 HOH B 9 509 59 HOH HOH . E 4 HOH B 10 510 53 HOH HOH . E 4 HOH B 11 511 12 HOH HOH . E 4 HOH B 12 512 51 HOH HOH . E 4 HOH B 13 513 21 HOH HOH . E 4 HOH B 14 514 48 HOH HOH . E 4 HOH B 15 515 27 HOH HOH . E 4 HOH B 16 516 15 HOH HOH . E 4 HOH B 17 517 38 HOH HOH . E 4 HOH B 18 518 43 HOH HOH . E 4 HOH B 19 519 14 HOH HOH . E 4 HOH B 20 520 55 HOH HOH . E 4 HOH B 21 521 46 HOH HOH . E 4 HOH B 22 522 31 HOH HOH . E 4 HOH B 23 523 4 HOH HOH . E 4 HOH B 24 524 68 HOH HOH . E 4 HOH B 25 525 64 HOH HOH . E 4 HOH B 26 526 16 HOH HOH . E 4 HOH B 27 527 33 HOH HOH . E 4 HOH B 28 528 63 HOH HOH . E 4 HOH B 29 529 56 HOH HOH . E 4 HOH B 30 530 44 HOH HOH . E 4 HOH B 31 531 57 HOH HOH . E 4 HOH B 32 532 30 HOH HOH . E 4 HOH B 33 533 2 HOH HOH . E 4 HOH B 34 534 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VSL . . . C 3 -3.211 12.288 -34.448 0.8 20 0 N1 VSL 401 B 1 HETATM 2 C C7 VSL . . . C 3 -0.005 14.084 -36.976 0.8 20 0 C7 VSL 401 B 1 HETATM 3 C C8 VSL . . . C 3 -0.666 14.605 -35.746 0.8 20 0 C8 VSL 401 B 1 HETATM 4 O O1 VSL . . . C 3 -4.374 14.88 -33.49 0.8 20 0 O1 VSL 401 B 1 HETATM 5 C C1 VSL . . . C 3 -3.467 14.799 -34.253 0.8 20 0 C1 VSL 401 B 1 HETATM 6 C C5 VSL . . . C 3 -0.081 11.709 -36.021 0.8 20 0 C5 VSL 401 B 1 HETATM 7 C C6 VSL . . . C 3 0.798 12.858 -36.508 0.8 20 0 C6 VSL 401 B 1 HETATM 8 C C4 VSL . . . C 3 -1.279 12.231 -35.423 0.8 20 0 C4 VSL 401 B 1 HETATM 9 C C3 VSL . . . C 3 -1.599 13.612 -35.338 0.8 20 0 C3 VSL 401 B 1 HETATM 10 C C2 VSL . . . C 3 -2.826 13.663 -34.715 0.8 20 0 C2 VSL 401 B 1 HETATM 11 O O VSL . . . C 3 -2.849 15.875 -34.812 0.8 20 0 O VSL 401 B 1 HETATM 12 C C VSL . . . C 3 -3.285 17.171 -34.587 0.8 20 0 C VSL 401 B 1 HETATM 13 N N VSL . . . C 3 -2.268 11.533 -34.864 0.8 20 0 N VSL 401 B 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #