data_7FMC # _model_server_result.job_id -dhdYKPZV_URwytWHbNpDA _model_server_result.datetime_utc '2024-11-15 05:47:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fmc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7FMC # _exptl.entry_id 7FMC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.225 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(2S)-2-hydroxy-3-(methylamino)propyl]pyrrolidin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.02 _cell.angle_gamma 90 _cell.entry_id 7FMC _cell.length_a 88.819 _cell.length_b 82.091 _cell.length_c 93.296 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FMC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H16 N2 O2' _chem_comp.formula_weight 172.225 _chem_comp.id VU5 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(2S)-2-hydroxy-3-(methylamino)propyl]pyrrolidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C7 VU5 doub 376 n n C N VU5 sing 377 n n C7 C6 VU5 sing 378 n n C7 N1 VU5 sing 379 n n C6 C5 VU5 sing 380 n n O1 C2 VU5 sing 381 n n C1 N VU5 sing 382 n n C1 C2 VU5 sing 383 n n C3 N1 VU5 sing 384 n n C3 C2 VU5 sing 385 n n N1 C4 VU5 sing 386 n n C5 C4 VU5 sing 387 n n O1 H1 VU5 sing 388 n n C1 H2 VU5 sing 389 n n C1 H3 VU5 sing 390 n n C5 H4 VU5 sing 391 n n C5 H5 VU5 sing 392 n n C6 H6 VU5 sing 393 n n C6 H7 VU5 sing 394 n n C4 H8 VU5 sing 395 n n C4 H9 VU5 sing 396 n n C3 H10 VU5 sing 397 n n C3 H11 VU5 sing 398 n n C2 H12 VU5 sing 399 n n N H13 VU5 sing 400 n n C H15 VU5 sing 401 n n C H16 VU5 sing 402 n n C H17 VU5 sing 403 n n # _atom_sites.entry_id 7FMC _atom_sites.fract_transf_matrix[1][1] 0.011259 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003663 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011271 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VU5 B 1 401 401 VU5 XXX . D 4 HOH A 1 2101 100 HOH HOH . D 4 HOH A 2 2102 51 HOH HOH . D 4 HOH A 3 2103 110 HOH HOH . D 4 HOH A 4 2104 4 HOH HOH . D 4 HOH A 5 2105 105 HOH HOH . D 4 HOH A 6 2106 19 HOH HOH . D 4 HOH A 7 2107 5 HOH HOH . D 4 HOH A 8 2108 9 HOH HOH . D 4 HOH A 9 2109 36 HOH HOH . D 4 HOH A 10 2110 12 HOH HOH . D 4 HOH A 11 2111 21 HOH HOH . D 4 HOH A 12 2112 63 HOH HOH . D 4 HOH A 13 2113 79 HOH HOH . D 4 HOH A 14 2114 13 HOH HOH . D 4 HOH A 15 2115 119 HOH HOH . D 4 HOH A 16 2116 57 HOH HOH . D 4 HOH A 17 2117 15 HOH HOH . D 4 HOH A 18 2118 37 HOH HOH . D 4 HOH A 19 2119 32 HOH HOH . D 4 HOH A 20 2120 31 HOH HOH . D 4 HOH A 21 2121 56 HOH HOH . D 4 HOH A 22 2122 8 HOH HOH . D 4 HOH A 23 2123 52 HOH HOH . D 4 HOH A 24 2124 78 HOH HOH . D 4 HOH A 25 2125 29 HOH HOH . D 4 HOH A 26 2126 94 HOH HOH . D 4 HOH A 27 2127 35 HOH HOH . D 4 HOH A 28 2128 10 HOH HOH . D 4 HOH A 29 2129 18 HOH HOH . D 4 HOH A 30 2130 90 HOH HOH . D 4 HOH A 31 2131 48 HOH HOH . D 4 HOH A 32 2132 124 HOH HOH . D 4 HOH A 33 2133 55 HOH HOH . D 4 HOH A 34 2134 108 HOH HOH . D 4 HOH A 35 2135 106 HOH HOH . D 4 HOH A 36 2136 67 HOH HOH . D 4 HOH A 37 2137 61 HOH HOH . D 4 HOH A 38 2138 93 HOH HOH . D 4 HOH A 39 2139 98 HOH HOH . D 4 HOH A 40 2140 74 HOH HOH . D 4 HOH A 41 2141 70 HOH HOH . D 4 HOH A 42 2142 86 HOH HOH . D 4 HOH A 43 2143 49 HOH HOH . D 4 HOH A 44 2144 99 HOH HOH . D 4 HOH A 45 2145 82 HOH HOH . D 4 HOH A 46 2146 60 HOH HOH . D 4 HOH A 47 2147 85 HOH HOH . D 4 HOH A 48 2148 69 HOH HOH . D 4 HOH A 49 2149 33 HOH HOH . D 4 HOH A 50 2150 6 HOH HOH . D 4 HOH A 51 2151 115 HOH HOH . D 4 HOH A 52 2152 116 HOH HOH . D 4 HOH A 53 2153 91 HOH HOH . D 4 HOH A 54 2154 84 HOH HOH . E 4 HOH B 1 501 76 HOH HOH . E 4 HOH B 2 502 14 HOH HOH . E 4 HOH B 3 503 3 HOH HOH . E 4 HOH B 4 504 38 HOH HOH . E 4 HOH B 5 505 101 HOH HOH . E 4 HOH B 6 506 71 HOH HOH . E 4 HOH B 7 507 39 HOH HOH . E 4 HOH B 8 508 121 HOH HOH . E 4 HOH B 9 509 41 HOH HOH . E 4 HOH B 10 510 43 HOH HOH . E 4 HOH B 11 511 58 HOH HOH . E 4 HOH B 12 512 59 HOH HOH . E 4 HOH B 13 513 120 HOH HOH . E 4 HOH B 14 514 23 HOH HOH . E 4 HOH B 15 515 11 HOH HOH . E 4 HOH B 16 516 64 HOH HOH . E 4 HOH B 17 517 109 HOH HOH . E 4 HOH B 18 518 40 HOH HOH . E 4 HOH B 19 519 87 HOH HOH . E 4 HOH B 20 520 103 HOH HOH . E 4 HOH B 21 521 20 HOH HOH . E 4 HOH B 22 522 27 HOH HOH . E 4 HOH B 23 523 42 HOH HOH . E 4 HOH B 24 524 16 HOH HOH . E 4 HOH B 25 525 47 HOH HOH . E 4 HOH B 26 526 111 HOH HOH . E 4 HOH B 27 527 80 HOH HOH . E 4 HOH B 28 528 104 HOH HOH . E 4 HOH B 29 529 107 HOH HOH . E 4 HOH B 30 530 73 HOH HOH . E 4 HOH B 31 531 95 HOH HOH . E 4 HOH B 32 532 66 HOH HOH . E 4 HOH B 33 533 62 HOH HOH . E 4 HOH B 34 534 24 HOH HOH . E 4 HOH B 35 535 44 HOH HOH . E 4 HOH B 36 536 50 HOH HOH . E 4 HOH B 37 537 26 HOH HOH . E 4 HOH B 38 538 125 HOH HOH . E 4 HOH B 39 539 30 HOH HOH . E 4 HOH B 40 540 53 HOH HOH . E 4 HOH B 41 541 17 HOH HOH . E 4 HOH B 42 542 114 HOH HOH . E 4 HOH B 43 543 46 HOH HOH . E 4 HOH B 44 544 22 HOH HOH . E 4 HOH B 45 545 88 HOH HOH . E 4 HOH B 46 546 25 HOH HOH . E 4 HOH B 47 547 45 HOH HOH . E 4 HOH B 48 548 72 HOH HOH . E 4 HOH B 49 549 123 HOH HOH . E 4 HOH B 50 550 7 HOH HOH . E 4 HOH B 51 551 89 HOH HOH . E 4 HOH B 52 552 102 HOH HOH . E 4 HOH B 53 553 128 HOH HOH . E 4 HOH B 54 554 68 HOH HOH . E 4 HOH B 55 555 2 HOH HOH . E 4 HOH B 56 556 28 HOH HOH . E 4 HOH B 57 557 122 HOH HOH . E 4 HOH B 58 558 65 HOH HOH . E 4 HOH B 59 559 96 HOH HOH . E 4 HOH B 60 560 81 HOH HOH . E 4 HOH B 61 561 54 HOH HOH . E 4 HOH B 62 562 118 HOH HOH . E 4 HOH B 63 563 92 HOH HOH . E 4 HOH B 64 564 113 HOH HOH . E 4 HOH B 65 565 97 HOH HOH . E 4 HOH B 66 566 126 HOH HOH . E 4 HOH B 67 567 117 HOH HOH . E 4 HOH B 68 568 129 HOH HOH . E 4 HOH B 69 569 75 HOH HOH . E 4 HOH B 70 570 127 HOH HOH . E 4 HOH B 71 571 83 HOH HOH . E 4 HOH B 72 572 131 HOH HOH . E 4 HOH B 73 573 112 HOH HOH . E 4 HOH B 74 574 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VU5 . . . C 3 8.339 1.182 -5 0.44 20 0 N1 VU5 401 B 1 HETATM 2 C C7 VU5 . . . C 3 8.04 0.252 -5.958 0.44 20 0 C7 VU5 401 B 1 HETATM 3 O O1 VU5 . . . C 3 10.16 4.247 -5.332 0.44 20 0 O1 VU5 401 B 1 HETATM 4 C C1 VU5 . . . C 3 7.893 3.823 -5.115 0.44 20 0 C1 VU5 401 B 1 HETATM 5 C C5 VU5 . . . C 3 6.441 0.039 -4.179 0.44 20 0 C5 VU5 401 B 1 HETATM 6 C C6 VU5 . . . C 3 6.897 -0.594 -5.486 0.44 20 0 C6 VU5 401 B 1 HETATM 7 C C4 VU5 . . . C 3 7.324 1.277 -3.955 0.44 20 0 C4 VU5 401 B 1 HETATM 8 C C3 VU5 . . . C 3 9.548 1.95 -5.038 0.44 20 0 C3 VU5 401 B 1 HETATM 9 C C2 VU5 . . . C 3 9.316 3.419 -4.664 0.44 20 0 C2 VU5 401 B 1 HETATM 10 O O VU5 . . . C 3 8.68 0.191 -6.987 0.44 20 0 O VU5 401 B 1 HETATM 11 N N VU5 . . . C 3 7.735 5.331 -5.015 0.44 20 1 N VU5 401 B 1 HETATM 12 C C VU5 . . . C 3 6.818 5.822 -6.101 0.44 20 0 C VU5 401 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #