data_7FN8 # _model_server_result.job_id 7UpfuGDSJ5et4t4S6MTHGA _model_server_result.datetime_utc '2024-10-10 17:12:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fn8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7FN8 # _exptl.entry_id 7FN8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 212.676 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-[(3-chlorophenyl)methyl]-N~2~-methylglycinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.18 _cell.angle_gamma 90 _cell.entry_id 7FN8 _cell.length_a 88.332 _cell.length_b 82.03 _cell.length_c 93.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FN8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 Cl N2 O' _chem_comp.formula_weight 212.676 _chem_comp.id VYK _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-[(3-chlorophenyl)methyl]-N~2~-methylglycinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N VYK sing 376 n n CL C6 VYK sing 377 n n C6 C7 VYK doub 378 n y C6 C5 VYK sing 379 n y C7 C2 VYK sing 380 n y C5 C4 VYK doub 381 n y O C9 VYK doub 382 n n N C8 VYK sing 383 n n N C1 VYK sing 384 n n C2 C3 VYK doub 385 n y C2 C1 VYK sing 386 n n C4 C3 VYK sing 387 n y C8 C9 VYK sing 388 n n C9 N1 VYK sing 389 n n N1 H1 VYK sing 390 n n N1 H2 VYK sing 391 n n C7 H3 VYK sing 392 n n C8 H4 VYK sing 393 n n C8 H5 VYK sing 394 n n C1 H6 VYK sing 395 n n C1 H7 VYK sing 396 n n C5 H8 VYK sing 397 n n C4 H9 VYK sing 398 n n C3 H10 VYK sing 399 n n C H12 VYK sing 400 n n C H13 VYK sing 401 n n C H14 VYK sing 402 n n # _atom_sites.entry_id 7FN8 _atom_sites.fract_transf_matrix[1][1] 0.011321 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003718 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012191 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VYK B 1 401 401 VYK XXX . D 4 HOH A 1 2101 49 HOH HOH . D 4 HOH A 2 2102 72 HOH HOH . D 4 HOH A 3 2103 66 HOH HOH . D 4 HOH A 4 2104 6 HOH HOH . D 4 HOH A 5 2105 92 HOH HOH . D 4 HOH A 6 2106 146 HOH HOH . D 4 HOH A 7 2107 31 HOH HOH . D 4 HOH A 8 2108 80 HOH HOH . D 4 HOH A 9 2109 108 HOH HOH . D 4 HOH A 10 2110 9 HOH HOH . D 4 HOH A 11 2111 143 HOH HOH . D 4 HOH A 12 2112 102 HOH HOH . D 4 HOH A 13 2113 62 HOH HOH . D 4 HOH A 14 2114 135 HOH HOH . D 4 HOH A 15 2115 2 HOH HOH . D 4 HOH A 16 2116 128 HOH HOH . D 4 HOH A 17 2117 27 HOH HOH . D 4 HOH A 18 2118 133 HOH HOH . D 4 HOH A 19 2119 148 HOH HOH . D 4 HOH A 20 2120 13 HOH HOH . D 4 HOH A 21 2121 16 HOH HOH . D 4 HOH A 22 2122 5 HOH HOH . D 4 HOH A 23 2123 145 HOH HOH . D 4 HOH A 24 2124 23 HOH HOH . D 4 HOH A 25 2125 57 HOH HOH . D 4 HOH A 26 2126 120 HOH HOH . D 4 HOH A 27 2127 61 HOH HOH . D 4 HOH A 28 2128 30 HOH HOH . D 4 HOH A 29 2129 85 HOH HOH . D 4 HOH A 30 2130 29 HOH HOH . D 4 HOH A 31 2131 42 HOH HOH . D 4 HOH A 32 2132 75 HOH HOH . D 4 HOH A 33 2133 10 HOH HOH . D 4 HOH A 34 2134 12 HOH HOH . D 4 HOH A 35 2135 101 HOH HOH . D 4 HOH A 36 2136 45 HOH HOH . D 4 HOH A 37 2137 95 HOH HOH . D 4 HOH A 38 2138 36 HOH HOH . D 4 HOH A 39 2139 73 HOH HOH . D 4 HOH A 40 2140 20 HOH HOH . D 4 HOH A 41 2141 4 HOH HOH . D 4 HOH A 42 2142 18 HOH HOH . D 4 HOH A 43 2143 130 HOH HOH . D 4 HOH A 44 2144 48 HOH HOH . D 4 HOH A 45 2145 74 HOH HOH . D 4 HOH A 46 2146 8 HOH HOH . D 4 HOH A 47 2147 112 HOH HOH . D 4 HOH A 48 2148 107 HOH HOH . D 4 HOH A 49 2149 64 HOH HOH . D 4 HOH A 50 2150 7 HOH HOH . D 4 HOH A 51 2151 89 HOH HOH . D 4 HOH A 52 2152 122 HOH HOH . D 4 HOH A 53 2153 110 HOH HOH . D 4 HOH A 54 2154 134 HOH HOH . D 4 HOH A 55 2155 116 HOH HOH . D 4 HOH A 56 2156 37 HOH HOH . D 4 HOH A 57 2157 60 HOH HOH . D 4 HOH A 58 2158 67 HOH HOH . D 4 HOH A 59 2159 54 HOH HOH . D 4 HOH A 60 2160 137 HOH HOH . D 4 HOH A 61 2161 52 HOH HOH . D 4 HOH A 62 2162 82 HOH HOH . D 4 HOH A 63 2163 115 HOH HOH . D 4 HOH A 64 2164 121 HOH HOH . D 4 HOH A 65 2165 132 HOH HOH . D 4 HOH A 66 2166 91 HOH HOH . D 4 HOH A 67 2167 93 HOH HOH . D 4 HOH A 68 2168 79 HOH HOH . D 4 HOH A 69 2169 43 HOH HOH . D 4 HOH A 70 2170 114 HOH HOH . D 4 HOH A 71 2171 32 HOH HOH . D 4 HOH A 72 2172 90 HOH HOH . D 4 HOH A 73 2173 104 HOH HOH . D 4 HOH A 74 2174 127 HOH HOH . D 4 HOH A 75 2175 141 HOH HOH . D 4 HOH A 76 2176 140 HOH HOH . D 4 HOH A 77 2177 113 HOH HOH . D 4 HOH A 78 2178 84 HOH HOH . E 4 HOH B 1 501 68 HOH HOH . E 4 HOH B 2 502 123 HOH HOH . E 4 HOH B 3 503 44 HOH HOH . E 4 HOH B 4 504 99 HOH HOH . E 4 HOH B 5 505 63 HOH HOH . E 4 HOH B 6 506 3 HOH HOH . E 4 HOH B 7 507 118 HOH HOH . E 4 HOH B 8 508 129 HOH HOH . E 4 HOH B 9 509 14 HOH HOH . E 4 HOH B 10 510 28 HOH HOH . E 4 HOH B 11 511 34 HOH HOH . E 4 HOH B 12 512 87 HOH HOH . E 4 HOH B 13 513 139 HOH HOH . E 4 HOH B 14 514 15 HOH HOH . E 4 HOH B 15 515 11 HOH HOH . E 4 HOH B 16 516 131 HOH HOH . E 4 HOH B 17 517 117 HOH HOH . E 4 HOH B 18 518 136 HOH HOH . E 4 HOH B 19 519 105 HOH HOH . E 4 HOH B 20 520 86 HOH HOH . E 4 HOH B 21 521 97 HOH HOH . E 4 HOH B 22 522 83 HOH HOH . E 4 HOH B 23 523 109 HOH HOH . E 4 HOH B 24 524 144 HOH HOH . E 4 HOH B 25 525 124 HOH HOH . E 4 HOH B 26 526 78 HOH HOH . E 4 HOH B 27 527 98 HOH HOH . E 4 HOH B 28 528 38 HOH HOH . E 4 HOH B 29 529 17 HOH HOH . E 4 HOH B 30 530 19 HOH HOH . E 4 HOH B 31 531 96 HOH HOH . E 4 HOH B 32 532 41 HOH HOH . E 4 HOH B 33 533 26 HOH HOH . E 4 HOH B 34 534 81 HOH HOH . E 4 HOH B 35 535 111 HOH HOH . E 4 HOH B 36 536 77 HOH HOH . E 4 HOH B 37 537 40 HOH HOH . E 4 HOH B 38 538 55 HOH HOH . E 4 HOH B 39 539 33 HOH HOH . E 4 HOH B 40 540 53 HOH HOH . E 4 HOH B 41 541 24 HOH HOH . E 4 HOH B 42 542 103 HOH HOH . E 4 HOH B 43 543 35 HOH HOH . E 4 HOH B 44 544 46 HOH HOH . E 4 HOH B 45 545 25 HOH HOH . E 4 HOH B 46 546 58 HOH HOH . E 4 HOH B 47 547 100 HOH HOH . E 4 HOH B 48 548 69 HOH HOH . E 4 HOH B 49 549 65 HOH HOH . E 4 HOH B 50 550 59 HOH HOH . E 4 HOH B 51 551 21 HOH HOH . E 4 HOH B 52 552 22 HOH HOH . E 4 HOH B 53 553 147 HOH HOH . E 4 HOH B 54 554 126 HOH HOH . E 4 HOH B 55 555 76 HOH HOH . E 4 HOH B 56 556 39 HOH HOH . E 4 HOH B 57 557 138 HOH HOH . E 4 HOH B 58 558 125 HOH HOH . E 4 HOH B 59 559 70 HOH HOH . E 4 HOH B 60 560 71 HOH HOH . E 4 HOH B 61 561 88 HOH HOH . E 4 HOH B 62 562 50 HOH HOH . E 4 HOH B 63 563 94 HOH HOH . E 4 HOH B 64 564 51 HOH HOH . E 4 HOH B 65 565 106 HOH HOH . E 4 HOH B 66 566 119 HOH HOH . E 4 HOH B 67 567 47 HOH HOH . E 4 HOH B 68 568 56 HOH HOH . E 4 HOH B 69 569 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VYK . . . C 3 -5.964 16.959 -32.905 0.66 20 0 N1 VYK 401 B 1 HETATM 2 C C7 VYK . . . C 3 -0.485 14.651 -35.565 0.66 20 0 C7 VYK 401 B 1 HETATM 3 C C8 VYK . . . C 3 -4.037 17.207 -34.27 0.66 20 0 C8 VYK 401 B 1 HETATM 4 C C9 VYK . . . C 3 -5.485 17.118 -34.167 0.66 20 0 C9 VYK 401 B 1 HETATM 5 C C1 VYK . . . C 3 -2.183 15.78 -34.267 0.66 20 0 C1 VYK 401 B 1 HETATM 6 C C5 VYK . . . C 3 -0.299 12.249 -35.294 0.66 20 0 C5 VYK 401 B 1 HETATM 7 C C6 VYK . . . C 3 0.168 13.435 -35.711 0.66 20 0 C6 VYK 401 B 1 HETATM 8 C C4 VYK . . . C 3 -1.438 12.259 -34.57 0.66 20 0 C4 VYK 401 B 1 HETATM 9 C C3 VYK . . . C 3 -2.046 13.467 -34.283 0.66 20 0 C3 VYK 401 B 1 HETATM 10 C C2 VYK . . . C 3 -1.596 14.629 -34.78 0.66 20 0 C2 VYK 401 B 1 HETATM 11 O O VYK . . . C 3 -6.126 17.169 -35.191 0.66 20 0 O VYK 401 B 1 HETATM 12 N N VYK . . . C 3 -3.584 15.897 -34.787 0.66 20 1 N VYK 401 B 1 HETATM 13 C C VYK . . . C 3 -3.586 15.993 -36.261 0.66 20 0 C VYK 401 B 1 HETATM 14 CL CL VYK . . . C 3 1.724 13.427 -36.17 0.66 20 0 CL VYK 401 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #