data_7FNE
#
_model_server_result.job_id            -vmWnmFhgWt_I8gJtzez2A 
_model_server_result.datetime_utc      '2024-10-18 04:20:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7fne 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2101}' 
#
_entry.id    7FNE 
#
_exptl.entry_id    7FNE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              207.272 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-(pentan-3-yl)-N'-(pyridin-3-yl)urea" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.37 
_cell.angle_gamma         90 
_cell.entry_id            7FNE 
_cell.length_a            89.325 
_cell.length_b            81.686 
_cell.length_c            93.299 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7FNE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H17 N3 O' 
_chem_comp.formula_weight    207.272 
_chem_comp.id                W0C 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-(pentan-3-yl)-N'-(pyridin-3-yl)urea" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 C3 W0C sing 376 n n 
C3 C2 W0C sing 377 n n 
C2 C1 W0C sing 378 n n 
C2 N W0C sing 379 n n 
C1 C W0C sing 380 n n 
N C5 W0C sing 381 n n 
C5 N1 W0C sing 382 n n 
C5 O W0C doub 383 n n 
N1 C6 W0C sing 384 n n 
C10 C6 W0C doub 385 n y 
C10 N2 W0C sing 386 n y 
C6 C7 W0C sing 387 n y 
N2 C9 W0C doub 388 n y 
C7 C8 W0C doub 389 n y 
C9 C8 W0C sing 390 n y 
N1 H1 W0C sing 391 n n 
C7 H2 W0C sing 392 n n 
C8 H3 W0C sing 393 n n 
C9 H4 W0C sing 394 n n 
C1 H5 W0C sing 395 n n 
C1 H6 W0C sing 396 n n 
C4 H7 W0C sing 397 n n 
C4 H8 W0C sing 398 n n 
C4 H9 W0C sing 399 n n 
C3 H10 W0C sing 400 n n 
C3 H11 W0C sing 401 n n 
C2 H12 W0C sing 402 n n 
N H13 W0C sing 403 n n 
C H14 W0C sing 404 n n 
C H15 W0C sing 405 n n 
C H16 W0C sing 406 n n 
C10 H17 W0C sing 407 n n 
#
_atom_sites.entry_id                     7FNE 
_atom_sites.fract_transf_matrix[1][1]    0.011195 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003718 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012242 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011294 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 W0C A 1 2101 2101 W0C XXX . 
D 4 HOH A 1 2201 106 HOH HOH . 
D 4 HOH A 2 2202 52 HOH HOH . 
D 4 HOH A 3 2203 3 HOH HOH . 
D 4 HOH A 4 2204 73 HOH HOH . 
D 4 HOH A 5 2205 90 HOH HOH . 
D 4 HOH A 6 2206 26 HOH HOH . 
D 4 HOH A 7 2207 49 HOH HOH . 
D 4 HOH A 8 2208 72 HOH HOH . 
D 4 HOH A 9 2209 38 HOH HOH . 
D 4 HOH A 10 2210 8 HOH HOH . 
D 4 HOH A 11 2211 45 HOH HOH . 
D 4 HOH A 12 2212 18 HOH HOH . 
D 4 HOH A 13 2213 20 HOH HOH . 
D 4 HOH A 14 2214 108 HOH HOH . 
D 4 HOH A 15 2215 102 HOH HOH . 
D 4 HOH A 16 2216 55 HOH HOH . 
D 4 HOH A 17 2217 7 HOH HOH . 
D 4 HOH A 18 2218 66 HOH HOH . 
D 4 HOH A 19 2219 47 HOH HOH . 
D 4 HOH A 20 2220 68 HOH HOH . 
D 4 HOH A 21 2221 62 HOH HOH . 
D 4 HOH A 22 2222 81 HOH HOH . 
D 4 HOH A 23 2223 60 HOH HOH . 
D 4 HOH A 24 2224 64 HOH HOH . 
D 4 HOH A 25 2225 51 HOH HOH . 
D 4 HOH A 26 2226 76 HOH HOH . 
D 4 HOH A 27 2227 98 HOH HOH . 
D 4 HOH A 28 2228 21 HOH HOH . 
D 4 HOH A 29 2229 59 HOH HOH . 
D 4 HOH A 30 2230 17 HOH HOH . 
D 4 HOH A 31 2231 101 HOH HOH . 
D 4 HOH A 32 2232 4 HOH HOH . 
D 4 HOH A 33 2233 10 HOH HOH . 
D 4 HOH A 34 2234 92 HOH HOH . 
D 4 HOH A 35 2235 97 HOH HOH . 
D 4 HOH A 36 2236 53 HOH HOH . 
D 4 HOH A 37 2237 16 HOH HOH . 
D 4 HOH A 38 2238 42 HOH HOH . 
D 4 HOH A 39 2239 29 HOH HOH . 
D 4 HOH A 40 2240 84 HOH HOH . 
D 4 HOH A 41 2241 88 HOH HOH . 
D 4 HOH A 42 2242 77 HOH HOH . 
D 4 HOH A 43 2243 54 HOH HOH . 
D 4 HOH A 44 2244 74 HOH HOH . 
D 4 HOH A 45 2245 5 HOH HOH . 
D 4 HOH A 46 2246 87 HOH HOH . 
D 4 HOH A 47 2247 56 HOH HOH . 
D 4 HOH A 48 2248 32 HOH HOH . 
D 4 HOH A 49 2249 14 HOH HOH . 
D 4 HOH A 50 2250 39 HOH HOH . 
D 4 HOH A 51 2251 48 HOH HOH . 
D 4 HOH A 52 2252 95 HOH HOH . 
D 4 HOH A 53 2253 58 HOH HOH . 
D 4 HOH A 54 2254 69 HOH HOH . 
D 4 HOH A 55 2255 100 HOH HOH . 
E 4 HOH B 1 401 96 HOH HOH . 
E 4 HOH B 2 402 2 HOH HOH . 
E 4 HOH B 3 403 25 HOH HOH . 
E 4 HOH B 4 404 99 HOH HOH . 
E 4 HOH B 5 405 93 HOH HOH . 
E 4 HOH B 6 406 105 HOH HOH . 
E 4 HOH B 7 407 41 HOH HOH . 
E 4 HOH B 8 408 33 HOH HOH . 
E 4 HOH B 9 409 46 HOH HOH . 
E 4 HOH B 10 410 67 HOH HOH . 
E 4 HOH B 11 411 35 HOH HOH . 
E 4 HOH B 12 412 27 HOH HOH . 
E 4 HOH B 13 413 11 HOH HOH . 
E 4 HOH B 14 414 15 HOH HOH . 
E 4 HOH B 15 415 13 HOH HOH . 
E 4 HOH B 16 416 12 HOH HOH . 
E 4 HOH B 17 417 94 HOH HOH . 
E 4 HOH B 18 418 104 HOH HOH . 
E 4 HOH B 19 419 43 HOH HOH . 
E 4 HOH B 20 420 61 HOH HOH . 
E 4 HOH B 21 421 9 HOH HOH . 
E 4 HOH B 22 422 75 HOH HOH . 
E 4 HOH B 23 423 34 HOH HOH . 
E 4 HOH B 24 424 103 HOH HOH . 
E 4 HOH B 25 425 57 HOH HOH . 
E 4 HOH B 26 426 40 HOH HOH . 
E 4 HOH B 27 427 82 HOH HOH . 
E 4 HOH B 28 428 6 HOH HOH . 
E 4 HOH B 29 429 19 HOH HOH . 
E 4 HOH B 30 430 31 HOH HOH . 
E 4 HOH B 31 431 70 HOH HOH . 
E 4 HOH B 32 432 50 HOH HOH . 
E 4 HOH B 33 433 24 HOH HOH . 
E 4 HOH B 34 434 65 HOH HOH . 
E 4 HOH B 35 435 30 HOH HOH . 
E 4 HOH B 36 436 36 HOH HOH . 
E 4 HOH B 37 437 28 HOH HOH . 
E 4 HOH B 38 438 37 HOH HOH . 
E 4 HOH B 39 439 23 HOH HOH . 
E 4 HOH B 40 440 44 HOH HOH . 
E 4 HOH B 41 441 89 HOH HOH . 
E 4 HOH B 42 442 78 HOH HOH . 
E 4 HOH B 43 443 86 HOH HOH . 
E 4 HOH B 44 444 79 HOH HOH . 
E 4 HOH B 45 445 107 HOH HOH . 
E 4 HOH B 46 446 85 HOH HOH . 
E 4 HOH B 47 447 80 HOH HOH . 
E 4 HOH B 48 448 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 W0C . . . C 3 25.513 2.804 30.39 0.36 20 0 N1 W0C 2101 A 1 
HETATM 2 C C7 W0C . . . C 3 24.031 3.982 31.94 0.36 20 0 C7 W0C 2101 A 1 
HETATM 3 C C8 W0C . . . C 3 23.785 5.147 32.659 0.36 20 0 C8 W0C 2101 A 1 
HETATM 4 N N2 W0C . . . C 3 25.782 6.179 31.805 0.36 20 0 N2 W0C 2101 A 1 
HETATM 5 C C9 W0C . . . C 3 24.673 6.219 32.57 0.36 20 0 C9 W0C 2101 A 1 
HETATM 6 C C1 W0C . . . C 3 25.518 -1.7 29.297 0.36 20 0 C1 W0C 2101 A 1 
HETATM 7 C C5 W0C . . . C 3 24.7 1.665 30.214 0.36 20 0 C5 W0C 2101 A 1 
HETATM 8 C C6 W0C . . . C 3 25.169 3.926 31.156 0.36 20 0 C6 W0C 2101 A 1 
HETATM 9 C C4 W0C . . . C 3 24.867 0.213 26.76 0.36 20 0 C4 W0C 2101 A 1 
HETATM 10 C C3 W0C . . . C 3 23.924 -0.448 27.723 0.36 20 0 C3 W0C 2101 A 1 
HETATM 11 C C2 W0C . . . C 3 24.531 -0.524 29.137 0.36 20 0 C2 W0C 2101 A 1 
HETATM 12 O O W0C . . . C 3 23.595 1.525 30.732 0.36 20 0 O W0C 2101 A 1 
HETATM 13 N N W0C . . . C 3 25.253 0.699 29.407 0.36 20 0 N W0C 2101 A 1 
HETATM 14 C C W0C . . . C 3 25.882 -1.845 30.766 0.36 20 0 C W0C 2101 A 1 
HETATM 15 C C10 W0C . . . C 3 26.013 5.043 31.117 0.36 20 0 C10 W0C 2101 A 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#