data_7FNU # _model_server_result.job_id z-gaB2W4F1OQ6hp77Fk3Qw _model_server_result.datetime_utc '2025-02-20 10:22:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fnu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2102}' # _entry.id 7FNU # _exptl.entry_id 7FNU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 205.258 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl [(5-amino-1,3,4-thiadiazol-2-yl)sulfanyl]acetate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.45 _cell.angle_gamma 90 _cell.entry_id 7FNU _cell.length_a 88.235 _cell.length_b 81.672 _cell.length_c 93.433 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FNU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C5 H7 N3 O2 S2' _chem_comp.formula_weight 205.258 _chem_comp.id VYO _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl [(5-amino-1,3,4-thiadiazol-2-yl)sulfanyl]acetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C4 VYO sing 376 n n S1 C4 VYO sing 377 n y S1 C3 VYO sing 378 n y C4 N1 VYO doub 379 n y N1 N VYO sing 380 n y C3 N VYO doub 381 n y C3 S VYO sing 382 n n S C2 VYO sing 383 n n C2 C1 VYO sing 384 n n C1 O1 VYO doub 385 n n C1 O VYO sing 386 n n O C VYO sing 387 n n N2 H1 VYO sing 388 n n N2 H2 VYO sing 389 n n C2 H3 VYO sing 390 n n C2 H4 VYO sing 391 n n C H5 VYO sing 392 n n C H6 VYO sing 393 n n C H7 VYO sing 394 n n # _atom_sites.entry_id 7FNU _atom_sites.fract_transf_matrix[1][1] 0.011333 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003781 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011283 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VYO A 1 2101 2101 VYO XXX . D 3 VYO A 1 2102 2201 VYO XXX . E 4 HOH A 1 2201 72 HOH HOH . E 4 HOH A 2 2202 117 HOH HOH . E 4 HOH A 3 2203 111 HOH HOH . E 4 HOH A 4 2204 56 HOH HOH . E 4 HOH A 5 2205 2 HOH HOH . E 4 HOH A 6 2206 95 HOH HOH . E 4 HOH A 7 2207 26 HOH HOH . E 4 HOH A 8 2208 62 HOH HOH . E 4 HOH A 9 2209 116 HOH HOH . E 4 HOH A 10 2210 79 HOH HOH . E 4 HOH A 11 2211 28 HOH HOH . E 4 HOH A 12 2212 7 HOH HOH . E 4 HOH A 13 2213 12 HOH HOH . E 4 HOH A 14 2214 102 HOH HOH . E 4 HOH A 15 2215 81 HOH HOH . E 4 HOH A 16 2216 88 HOH HOH . E 4 HOH A 17 2217 30 HOH HOH . E 4 HOH A 18 2218 106 HOH HOH . E 4 HOH A 19 2219 18 HOH HOH . E 4 HOH A 20 2220 8 HOH HOH . E 4 HOH A 21 2221 131 HOH HOH . E 4 HOH A 22 2222 10 HOH HOH . E 4 HOH A 23 2223 108 HOH HOH . E 4 HOH A 24 2224 61 HOH HOH . E 4 HOH A 25 2225 15 HOH HOH . E 4 HOH A 26 2226 53 HOH HOH . E 4 HOH A 27 2227 123 HOH HOH . E 4 HOH A 28 2228 25 HOH HOH . E 4 HOH A 29 2229 71 HOH HOH . E 4 HOH A 30 2230 75 HOH HOH . E 4 HOH A 31 2231 50 HOH HOH . E 4 HOH A 32 2232 64 HOH HOH . E 4 HOH A 33 2233 29 HOH HOH . E 4 HOH A 34 2234 31 HOH HOH . E 4 HOH A 35 2235 14 HOH HOH . E 4 HOH A 36 2236 104 HOH HOH . E 4 HOH A 37 2237 110 HOH HOH . E 4 HOH A 38 2238 112 HOH HOH . E 4 HOH A 39 2239 45 HOH HOH . E 4 HOH A 40 2240 89 HOH HOH . E 4 HOH A 41 2241 68 HOH HOH . E 4 HOH A 42 2242 113 HOH HOH . E 4 HOH A 43 2243 128 HOH HOH . E 4 HOH A 44 2244 86 HOH HOH . E 4 HOH A 45 2245 11 HOH HOH . E 4 HOH A 46 2246 46 HOH HOH . E 4 HOH A 47 2247 27 HOH HOH . E 4 HOH A 48 2248 49 HOH HOH . E 4 HOH A 49 2249 84 HOH HOH . E 4 HOH A 50 2250 107 HOH HOH . E 4 HOH A 51 2251 5 HOH HOH . E 4 HOH A 52 2252 73 HOH HOH . E 4 HOH A 53 2253 37 HOH HOH . E 4 HOH A 54 2254 23 HOH HOH . E 4 HOH A 55 2255 40 HOH HOH . E 4 HOH A 56 2256 47 HOH HOH . E 4 HOH A 57 2257 43 HOH HOH . E 4 HOH A 58 2258 122 HOH HOH . E 4 HOH A 59 2259 80 HOH HOH . E 4 HOH A 60 2260 115 HOH HOH . E 4 HOH A 61 2261 96 HOH HOH . E 4 HOH A 62 2262 39 HOH HOH . E 4 HOH A 63 2263 76 HOH HOH . E 4 HOH A 64 2264 132 HOH HOH . E 4 HOH A 65 2265 85 HOH HOH . E 4 HOH A 66 2266 119 HOH HOH . F 4 HOH B 1 401 130 HOH HOH . F 4 HOH B 2 402 17 HOH HOH . F 4 HOH B 3 403 34 HOH HOH . F 4 HOH B 4 404 92 HOH HOH . F 4 HOH B 5 405 94 HOH HOH . F 4 HOH B 6 406 13 HOH HOH . F 4 HOH B 7 407 3 HOH HOH . F 4 HOH B 8 408 114 HOH HOH . F 4 HOH B 9 409 21 HOH HOH . F 4 HOH B 10 410 125 HOH HOH . F 4 HOH B 11 411 83 HOH HOH . F 4 HOH B 12 412 127 HOH HOH . F 4 HOH B 13 413 16 HOH HOH . F 4 HOH B 14 414 54 HOH HOH . F 4 HOH B 15 415 97 HOH HOH . F 4 HOH B 16 416 59 HOH HOH . F 4 HOH B 17 417 124 HOH HOH . F 4 HOH B 18 418 98 HOH HOH . F 4 HOH B 19 419 67 HOH HOH . F 4 HOH B 20 420 77 HOH HOH . F 4 HOH B 21 421 87 HOH HOH . F 4 HOH B 22 422 103 HOH HOH . F 4 HOH B 23 423 99 HOH HOH . F 4 HOH B 24 424 74 HOH HOH . F 4 HOH B 25 425 90 HOH HOH . F 4 HOH B 26 426 129 HOH HOH . F 4 HOH B 27 427 66 HOH HOH . F 4 HOH B 28 428 32 HOH HOH . F 4 HOH B 29 429 82 HOH HOH . F 4 HOH B 30 430 69 HOH HOH . F 4 HOH B 31 431 24 HOH HOH . F 4 HOH B 32 432 70 HOH HOH . F 4 HOH B 33 433 19 HOH HOH . F 4 HOH B 34 434 9 HOH HOH . F 4 HOH B 35 435 6 HOH HOH . F 4 HOH B 36 436 63 HOH HOH . F 4 HOH B 37 437 42 HOH HOH . F 4 HOH B 38 438 36 HOH HOH . F 4 HOH B 39 439 93 HOH HOH . F 4 HOH B 40 440 38 HOH HOH . F 4 HOH B 41 441 52 HOH HOH . F 4 HOH B 42 442 60 HOH HOH . F 4 HOH B 43 443 35 HOH HOH . F 4 HOH B 44 444 41 HOH HOH . F 4 HOH B 45 445 51 HOH HOH . F 4 HOH B 46 446 57 HOH HOH . F 4 HOH B 47 447 48 HOH HOH . F 4 HOH B 48 448 91 HOH HOH . F 4 HOH B 49 449 44 HOH HOH . F 4 HOH B 50 450 65 HOH HOH . F 4 HOH B 51 451 109 HOH HOH . F 4 HOH B 52 452 33 HOH HOH . F 4 HOH B 53 453 100 HOH HOH . F 4 HOH B 54 454 78 HOH HOH . F 4 HOH B 55 455 4 HOH HOH . F 4 HOH B 56 456 121 HOH HOH . F 4 HOH B 57 457 22 HOH HOH . F 4 HOH B 58 458 58 HOH HOH . F 4 HOH B 59 459 20 HOH HOH . F 4 HOH B 60 460 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VYO . . . D 3 44.599 29.484 33.575 0.32 20 0 N1 VYO 2102 A 1 HETATM 2 N N2 VYO . . . D 3 43.46 31.091 34.941 0.32 20 0 N2 VYO 2102 A 1 HETATM 3 O O1 VYO . . . D 3 44.001 28.584 28.117 0.32 20 0 O1 VYO 2102 A 1 HETATM 4 C C1 VYO . . . D 3 45.175 28.433 28.284 0.32 20 0 C1 VYO 2102 A 1 HETATM 5 C C4 VYO . . . D 3 44.017 30.691 33.777 0.32 20 0 C4 VYO 2102 A 1 HETATM 6 C C3 VYO . . . D 3 44.861 30.384 31.558 0.32 20 0 C3 VYO 2102 A 1 HETATM 7 C C2 VYO . . . D 3 46.062 29.078 29.324 0.32 20 0 C2 VYO 2102 A 1 HETATM 8 O O VYO . . . D 3 45.825 27.575 27.448 0.32 20 0 O VYO 2102 A 1 HETATM 9 C C VYO . . . D 3 47.192 27.371 27.609 0.32 20 0 C VYO 2102 A 1 HETATM 10 S S VYO . . . D 3 45.285 30.563 29.93 0.32 20 0 S VYO 2102 A 1 HETATM 11 S S1 VYO . . . D 3 44.052 31.696 32.337 0.32 20 0 S1 VYO 2102 A 1 HETATM 12 N N VYO . . . D 3 45.053 29.343 32.345 0.32 20 0 N VYO 2102 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #