data_7FPJ # _model_server_result.job_id WDHQM5_jO61lqKmBcuTNVA _model_server_result.datetime_utc '2024-11-07 12:58:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fpj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2101}' # _entry.id 7FPJ # _exptl.entry_id 7FPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 187.241 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(1-benzyl-1H-imidazol-2-yl)methanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.31 _cell.angle_gamma 90 _cell.entry_id 7FPJ _cell.length_a 87.618 _cell.length_b 82.036 _cell.length_c 93.762 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H13 N3' _chem_comp.formula_weight 187.241 _chem_comp.id V2L _chem_comp.mon_nstd_flag . _chem_comp.name 1-(1-benzyl-1H-imidazol-2-yl)methanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C5 V2L doub 358 n y C C1 V2L sing 359 n y C5 C4 V2L sing 360 n y C1 C2 V2L doub 361 n y C4 C3 V2L doub 362 n y C2 C3 V2L sing 363 n y C3 C6 V2L sing 364 n n C6 N V2L sing 365 n n N C7 V2L sing 366 n y N C9 V2L sing 367 n y C7 C8 V2L doub 368 n y C9 C10 V2L sing 369 n n C9 N1 V2L doub 370 n y C8 N1 V2L sing 371 n y C10 N2 V2L sing 372 n n C7 H1 V2L sing 373 n n C8 H2 V2L sing 374 n n N2 H3 V2L sing 375 n n N2 H4 V2L sing 376 n n C1 H6 V2L sing 377 n n C5 H7 V2L sing 378 n n C6 H8 V2L sing 379 n n C6 H9 V2L sing 380 n n C4 H10 V2L sing 381 n n C2 H11 V2L sing 382 n n C10 H12 V2L sing 383 n n C10 H13 V2L sing 384 n n C H14 V2L sing 385 n n # _atom_sites.entry_id 7FPJ _atom_sites.fract_transf_matrix[1][1] 0.011413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003777 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V2L A 1 2101 2101 V2L XXX . D 4 HOH A 1 2201 21 HOH HOH . D 4 HOH A 2 2202 60 HOH HOH . D 4 HOH A 3 2203 59 HOH HOH . D 4 HOH A 4 2204 58 HOH HOH . D 4 HOH A 5 2205 10 HOH HOH . D 4 HOH A 6 2206 14 HOH HOH . D 4 HOH A 7 2207 5 HOH HOH . D 4 HOH A 8 2208 3 HOH HOH . D 4 HOH A 9 2209 33 HOH HOH . D 4 HOH A 10 2210 32 HOH HOH . D 4 HOH A 11 2211 45 HOH HOH . D 4 HOH A 12 2212 13 HOH HOH . D 4 HOH A 13 2213 12 HOH HOH . D 4 HOH A 14 2214 2 HOH HOH . D 4 HOH A 15 2215 49 HOH HOH . D 4 HOH A 16 2216 20 HOH HOH . D 4 HOH A 17 2217 9 HOH HOH . D 4 HOH A 18 2218 16 HOH HOH . D 4 HOH A 19 2219 54 HOH HOH . D 4 HOH A 20 2220 25 HOH HOH . D 4 HOH A 21 2221 38 HOH HOH . D 4 HOH A 22 2222 22 HOH HOH . D 4 HOH A 23 2223 26 HOH HOH . D 4 HOH A 24 2224 35 HOH HOH . D 4 HOH A 25 2225 31 HOH HOH . D 4 HOH A 26 2226 43 HOH HOH . D 4 HOH A 27 2227 50 HOH HOH . D 4 HOH A 28 2228 51 HOH HOH . D 4 HOH A 29 2229 18 HOH HOH . D 4 HOH A 30 2230 8 HOH HOH . D 4 HOH A 31 2231 30 HOH HOH . D 4 HOH A 32 2232 37 HOH HOH . D 4 HOH A 33 2233 46 HOH HOH . D 4 HOH A 34 2234 52 HOH HOH . D 4 HOH A 35 2235 57 HOH HOH . E 4 HOH B 1 401 53 HOH HOH . E 4 HOH B 2 402 40 HOH HOH . E 4 HOH B 3 403 17 HOH HOH . E 4 HOH B 4 404 15 HOH HOH . E 4 HOH B 5 405 39 HOH HOH . E 4 HOH B 6 406 4 HOH HOH . E 4 HOH B 7 407 47 HOH HOH . E 4 HOH B 8 408 48 HOH HOH . E 4 HOH B 9 409 34 HOH HOH . E 4 HOH B 10 410 24 HOH HOH . E 4 HOH B 11 411 56 HOH HOH . E 4 HOH B 12 412 44 HOH HOH . E 4 HOH B 13 413 55 HOH HOH . E 4 HOH B 14 414 19 HOH HOH . E 4 HOH B 15 415 36 HOH HOH . E 4 HOH B 16 416 11 HOH HOH . E 4 HOH B 17 417 6 HOH HOH . E 4 HOH B 18 418 23 HOH HOH . E 4 HOH B 19 419 27 HOH HOH . E 4 HOH B 20 420 28 HOH HOH . E 4 HOH B 21 421 29 HOH HOH . E 4 HOH B 22 422 42 HOH HOH . E 4 HOH B 23 423 41 HOH HOH . E 4 HOH B 24 424 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 V2L . . . C 3 30.397 16.082 42.784 0.82 20 0 N1 V2L 2101 A 1 HETATM 2 C C7 V2L . . . C 3 29.139 17.548 41.803 0.82 20 0 C7 V2L 2101 A 1 HETATM 3 C C8 V2L . . . C 3 30.28 17.346 42.456 0.82 20 0 C8 V2L 2101 A 1 HETATM 4 N N2 V2L . . . C 3 27.593 13.917 42.76 0.82 20 1 N2 V2L 2101 A 1 HETATM 5 C C9 V2L . . . C 3 29.323 15.506 42.351 0.82 20 0 C9 V2L 2101 A 1 HETATM 6 C C1 V2L . . . C 3 28.883 15.586 37.891 0.82 20 0 C1 V2L 2101 A 1 HETATM 7 C C5 V2L . . . C 3 26.685 15.246 37.549 0.82 20 0 C5 V2L 2101 A 1 HETATM 8 C C6 V2L . . . C 3 27.304 16.231 41.059 0.82 20 0 C6 V2L 2101 A 1 HETATM 9 C C4 V2L . . . C 3 26.436 15.678 38.843 0.82 20 0 C4 V2L 2101 A 1 HETATM 10 C C3 V2L . . . C 3 27.466 16.02 39.593 0.82 20 0 C3 V2L 2101 A 1 HETATM 11 C C2 V2L . . . C 3 28.643 16.003 39.126 0.82 20 0 C2 V2L 2101 A 1 HETATM 12 C C10 V2L . . . C 3 29.098 14.115 42.617 0.82 20 0 C10 V2L 2101 A 1 HETATM 13 N N V2L . . . C 3 28.533 16.403 41.723 0.82 20 0 N V2L 2101 A 1 HETATM 14 C C V2L . . . C 3 27.909 15.193 37.103 0.82 20 0 C V2L 2101 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #