data_7FQL # _model_server_result.job_id 1nGC2RK-LNQsJDgqsoDcNg _model_server_result.datetime_utc '2024-11-28 11:34:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fql # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":503}' # _entry.id 7FQL # _exptl.entry_id 7FQL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.25 _cell.angle_gamma 90 _cell.entry_id 7FQL _cell.length_a 89.301 _cell.length_b 131.935 _cell.length_c 117.677 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FQL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 ? monomeric 1 author_defined_assembly 7 ? monomeric 1 author_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,K,L 1 1 B,I,M,N 2 1 C,O,P,Q 3 1 D,R,S 4 1 E,J,T,U,V 5 1 F,W,X,Y,Z,AA 6 1 G,BA,CA,DA,EA,FA 7 1 H,GA,HA,IA,JA 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 O N N ? 4 S N N ? 4 U N N ? 4 W N N ? 4 Y N N ? 4 BA N N ? 4 DA N N ? 4 HA N N ? 4 IA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n I NAG 1 I 1 NAG B 304 NAG 2 n I NAG 2 I 2 NAG B 306 NAG 2 n J NAG 1 J 1 NAG E 304 NAG 2 n J NAG 2 J 2 NAG E 306 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 147 A THR 146 1_555 A N SNN 148 A SNN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.509 ? covale ? covale2 A C SNN 148 A SNN 147 1_555 A N HIS 149 A HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 A C5 SNN 148 A SNN 147 1_555 A N HIS 149 A HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale4 A SG CYS 190 A CYS 189 1_555 K C6 WSN . A WSN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale5 A ND2 ASN 264 A ASN 263 1_555 L C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 B C THR 147 B THR 146 1_555 B N SNN 148 B SNN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale7 B C SNN 148 B SNN 147 1_555 B N HIS 149 B HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale8 B C5 SNN 148 B SNN 147 1_555 B N HIS 149 B HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale9 B ND2 ASN 168 B ASN 167 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale10 B SG CYS 190 B CYS 189 1_555 M C6 WSN . B WSN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale11 C C THR 147 C THR 146 1_555 C N SNN 148 C SNN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? covale ? covale12 C C SNN 148 C SNN 147 1_555 C N HIS 149 C HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? covale ? covale13 C C5 SNN 148 C SNN 147 1_555 C N HIS 149 C HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale14 C ND2 ASN 168 C ASN 167 1_555 O C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale15 C SG CYS 190 C CYS 189 1_555 P C6 WSN . C WSN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale16 D C THR 147 D THR 146 1_555 D N SNN 148 D SNN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale17 D C SNN 148 D SNN 147 1_555 D N HIS 149 D HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale18 D C5 SNN 148 D SNN 147 1_555 D N HIS 149 D HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale19 D ND2 ASN 168 D ASN 167 1_555 S C1 NAG . D NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale20 D SG CYS 190 D CYS 189 1_555 R C6 WSN . D WSN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale21 E C THR 147 E THR 146 1_555 E N SNN 148 E SNN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale22 E C SNN 148 E SNN 147 1_555 E N HIS 149 E HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale23 E C5 SNN 148 E SNN 147 1_555 E N HIS 149 E HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale24 E ND2 ASN 168 E ASN 167 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale25 E SG CYS 190 E CYS 189 1_555 T C6 WSN . E WSN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale26 E ND2 ASN 264 E ASN 263 1_555 U C1 NAG . E NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale27 F C THR 147 F THR 146 1_555 F N SNN 148 F SNN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale28 F C SNN 148 F SNN 147 1_555 F N HIS 149 F HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale29 F C5 SNN 148 F SNN 147 1_555 F N HIS 149 F HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale30 F ND2 ASN 168 F ASN 167 1_555 W C1 NAG . F NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale31 F SG CYS 190 F CYS 189 1_555 X C6 WSN . F WSN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale32 F ND2 ASN 264 F ASN 263 1_555 Y C1 NAG . F NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale33 G C THR 147 G THR 146 1_555 G N SNN 148 G SNN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? covale ? covale34 G C SNN 148 G SNN 147 1_555 G N HIS 149 G HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale35 G C5 SNN 148 G SNN 147 1_555 G N HIS 149 G HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale36 G ND2 ASN 168 G ASN 167 1_555 BA C1 NAG . G NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale37 G SG CYS 190 G CYS 189 1_555 CA C6 WSN . G WSN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale38 G ND2 ASN 264 G ASN 263 1_555 DA C1 NAG . G NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale39 H C THR 147 H THR 146 1_555 H N SNN 148 H SNN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 ? covale ? covale40 H C SNN 148 H SNN 147 1_555 H N HIS 149 H HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale41 H C5 SNN 148 H SNN 147 1_555 H N HIS 149 H HIS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale42 H ND2 ASN 168 H ASN 167 1_555 IA C1 NAG . H NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale43 H SG CYS 190 H CYS 189 1_555 GA C6 WSN . H WSN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale44 H ND2 ASN 264 H ASN 263 1_555 HA C1 NAG . H NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale45 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale46 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7FQL _atom_sites.fract_transf_matrix[1][1] 0.011198 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00005 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 3 WSN A 1 501 305 WSN L0R . L 4 NAG A 1 502 306 NAG NAG . M 3 WSN B 1 501 305 WSN L0R . N 5 SO4 B 1 502 8 SO4 SO4 . O 4 NAG C 1 501 304 NAG NAG . P 3 WSN C 1 502 305 WSN L0R . Q 5 SO4 C 1 503 6 SO4 SO4 . R 3 WSN D 1 501 305 WSN L0R . S 4 NAG D 1 502 306 NAG NAG . T 3 WSN E 1 501 305 WSN L0R . U 4 NAG E 1 502 307 NAG NAG . V 5 SO4 E 1 503 3 SO4 SO4 . W 4 NAG F 1 501 304 NAG NAG . X 3 WSN F 1 502 305 WSN L0R . Y 4 NAG F 1 503 307 NAG NAG . Z 5 SO4 F 1 504 4 SO4 SO4 . AA 5 SO4 F 1 505 7 SO4 SO4 . BA 4 NAG G 1 501 304 NAG NAG . CA 3 WSN G 1 502 305 WSN L0R . DA 4 NAG G 1 503 306 NAG NAG . EA 5 SO4 G 1 504 1 SO4 SO4 . FA 5 SO4 G 1 505 5 SO4 SO4 . GA 3 WSN H 1 501 305 WSN L0R . HA 4 NAG H 1 502 306 NAG NAG . IA 4 NAG H 1 503 307 NAG NAG . JA 5 SO4 H 1 504 2 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . IA 4 52.957 31.157 96.042 1 68.7 ? C1 NAG 503 H 1 HETATM 2 C C2 NAG . . . IA 4 53.411 30.536 94.721 1 70.2 ? C2 NAG 503 H 1 HETATM 3 C C3 NAG . . . IA 4 52.414 30.868 93.617 1 74.99 ? C3 NAG 503 H 1 HETATM 4 C C4 NAG . . . IA 4 51.022 30.394 94.014 1 78.53 ? C4 NAG 503 H 1 HETATM 5 C C5 NAG . . . IA 4 50.624 30.998 95.36 1 80.17 ? C5 NAG 503 H 1 HETATM 6 C C6 NAG . . . IA 4 49.319 30.45 95.889 1 74.77 ? C6 NAG 503 H 1 HETATM 7 C C7 NAG . . . IA 4 55.84 30.295 94.724 1 64.62 ? C7 NAG 503 H 1 HETATM 8 C C8 NAG . . . IA 4 57.148 30.84 94.243 1 56.22 ? C8 NAG 503 H 1 HETATM 9 N N2 NAG . . . IA 4 54.748 30.966 94.351 1 67.65 ? N2 NAG 503 H 1 HETATM 10 O O3 NAG . . . IA 4 52.826 30.267 92.392 1 71.28 ? O3 NAG 503 H 1 HETATM 11 O O4 NAG . . . IA 4 50.075 30.757 93.016 1 76.2 ? O4 NAG 503 H 1 HETATM 12 O O5 NAG . . . IA 4 51.62 30.707 96.355 1 70.74 ? O5 NAG 503 H 1 HETATM 13 O O6 NAG . . . IA 4 48.447 30.076 94.831 1 70.26 ? O6 NAG 503 H 1 HETATM 14 O O7 NAG . . . IA 4 55.773 29.294 95.425 1 63.78 ? O7 NAG 503 H 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #