data_7FQY # _model_server_result.job_id Js-EAfUh1etLoz4o7oGbhg _model_server_result.datetime_utc '2024-11-13 10:51:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fqy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 7FQY # _exptl.entry_id 7FQY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.266 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}1-(4,6-dimethylpyrimidin-2-yl)benzene-1,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7FQY _cell.length_a 89.61 _cell.length_b 89.61 _cell.length_c 106.42 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FQY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H14 N4' _chem_comp.formula_weight 214.266 _chem_comp.id GRY _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}1-(4,6-dimethylpyrimidin-2-yl)benzene-1,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GRY sing 129 n n C11 C12 GRY doub 130 n y C11 C10 GRY sing 131 n y N3 C10 GRY sing 132 n n C12 C7 GRY sing 133 n y C10 C9 GRY doub 134 n y C2 N4 GRY doub 135 n y C2 C3 GRY sing 136 n y N4 C6 GRY sing 137 n y C3 C4 GRY doub 138 n y C7 N2 GRY sing 139 n n C7 C8 GRY doub 140 n y C9 C8 GRY sing 141 n y C6 N2 GRY sing 142 n n C6 N1 GRY doub 143 n y C4 N1 GRY sing 144 n y C4 C5 GRY sing 145 n n N3 H1 GRY sing 146 n n N3 H2 GRY sing 147 n n C5 H3 GRY sing 148 n n C5 H4 GRY sing 149 n n C5 H5 GRY sing 150 n n C8 H6 GRY sing 151 n n C1 H7 GRY sing 152 n n C1 H8 GRY sing 153 n n C1 H9 GRY sing 154 n n C3 H10 GRY sing 155 n n N2 H11 GRY sing 156 n n C9 H12 GRY sing 157 n n C11 H13 GRY sing 158 n n C12 H14 GRY sing 159 n n # _atom_sites.entry_id 7FQY _atom_sites.fract_transf_matrix[1][1] 0.011159 _atom_sites.fract_transf_matrix[1][2] 0.006443 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012886 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 701 701 TRS TRS . C 3 GRY A 1 702 801 GRY LIG . D 4 HOH A 1 801 401 HOH HOH . D 4 HOH A 2 802 646 HOH HOH . D 4 HOH A 3 803 637 HOH HOH . D 4 HOH A 4 804 466 HOH HOH . D 4 HOH A 5 805 471 HOH HOH . D 4 HOH A 6 806 404 HOH HOH . D 4 HOH A 7 807 643 HOH HOH . D 4 HOH A 8 808 439 HOH HOH . D 4 HOH A 9 809 413 HOH HOH . D 4 HOH A 10 810 631 HOH HOH . D 4 HOH A 11 811 406 HOH HOH . D 4 HOH A 12 812 425 HOH HOH . D 4 HOH A 13 813 630 HOH HOH . D 4 HOH A 14 814 448 HOH HOH . D 4 HOH A 15 815 633 HOH HOH . D 4 HOH A 16 816 424 HOH HOH . D 4 HOH A 17 817 434 HOH HOH . D 4 HOH A 18 818 412 HOH HOH . D 4 HOH A 19 819 555 HOH HOH . D 4 HOH A 20 820 639 HOH HOH . D 4 HOH A 21 821 451 HOH HOH . D 4 HOH A 22 822 497 HOH HOH . D 4 HOH A 23 823 438 HOH HOH . D 4 HOH A 24 824 477 HOH HOH . D 4 HOH A 25 825 480 HOH HOH . D 4 HOH A 26 826 496 HOH HOH . D 4 HOH A 27 827 638 HOH HOH . D 4 HOH A 28 828 423 HOH HOH . D 4 HOH A 29 829 482 HOH HOH . D 4 HOH A 30 830 568 HOH HOH . D 4 HOH A 31 831 454 HOH HOH . D 4 HOH A 32 832 431 HOH HOH . D 4 HOH A 33 833 656 HOH HOH . D 4 HOH A 34 834 499 HOH HOH . D 4 HOH A 35 835 415 HOH HOH . D 4 HOH A 36 836 436 HOH HOH . D 4 HOH A 37 837 444 HOH HOH . D 4 HOH A 38 838 636 HOH HOH . D 4 HOH A 39 839 626 HOH HOH . D 4 HOH A 40 840 403 HOH HOH . D 4 HOH A 41 841 427 HOH HOH . D 4 HOH A 42 842 502 HOH HOH . D 4 HOH A 43 843 474 HOH HOH . D 4 HOH A 44 844 625 HOH HOH . D 4 HOH A 45 845 484 HOH HOH . D 4 HOH A 46 846 419 HOH HOH . D 4 HOH A 47 847 440 HOH HOH . D 4 HOH A 48 848 472 HOH HOH . D 4 HOH A 49 849 479 HOH HOH . D 4 HOH A 50 850 449 HOH HOH . D 4 HOH A 51 851 481 HOH HOH . D 4 HOH A 52 852 469 HOH HOH . D 4 HOH A 53 853 447 HOH HOH . D 4 HOH A 54 854 426 HOH HOH . D 4 HOH A 55 855 498 HOH HOH . D 4 HOH A 56 856 421 HOH HOH . D 4 HOH A 57 857 488 HOH HOH . D 4 HOH A 58 858 500 HOH HOH . D 4 HOH A 59 859 545 HOH HOH . D 4 HOH A 60 860 505 HOH HOH . D 4 HOH A 61 861 642 HOH HOH . D 4 HOH A 62 862 442 HOH HOH . D 4 HOH A 63 863 491 HOH HOH . D 4 HOH A 64 864 443 HOH HOH . D 4 HOH A 65 865 432 HOH HOH . D 4 HOH A 66 866 647 HOH HOH . D 4 HOH A 67 867 455 HOH HOH . D 4 HOH A 68 868 617 HOH HOH . D 4 HOH A 69 869 437 HOH HOH . D 4 HOH A 70 870 603 HOH HOH . D 4 HOH A 71 871 430 HOH HOH . D 4 HOH A 72 872 621 HOH HOH . D 4 HOH A 73 873 433 HOH HOH . D 4 HOH A 74 874 585 HOH HOH . D 4 HOH A 75 875 478 HOH HOH . D 4 HOH A 76 876 512 HOH HOH . D 4 HOH A 77 877 459 HOH HOH . D 4 HOH A 78 878 508 HOH HOH . D 4 HOH A 79 879 579 HOH HOH . D 4 HOH A 80 880 655 HOH HOH . D 4 HOH A 81 881 475 HOH HOH . D 4 HOH A 82 882 627 HOH HOH . D 4 HOH A 83 883 645 HOH HOH . D 4 HOH A 84 884 566 HOH HOH . D 4 HOH A 85 885 527 HOH HOH . D 4 HOH A 86 886 518 HOH HOH . D 4 HOH A 87 887 507 HOH HOH . D 4 HOH A 88 888 506 HOH HOH . D 4 HOH A 89 889 538 HOH HOH . D 4 HOH A 90 890 547 HOH HOH . D 4 HOH A 91 891 651 HOH HOH . D 4 HOH A 92 892 563 HOH HOH . D 4 HOH A 93 893 501 HOH HOH . D 4 HOH A 94 894 569 HOH HOH . D 4 HOH A 95 895 530 HOH HOH . D 4 HOH A 96 896 521 HOH HOH . D 4 HOH A 97 897 516 HOH HOH . D 4 HOH A 98 898 623 HOH HOH . D 4 HOH A 99 899 539 HOH HOH . D 4 HOH A 100 900 540 HOH HOH . D 4 HOH A 101 901 553 HOH HOH . D 4 HOH A 102 902 635 HOH HOH . D 4 HOH A 103 903 410 HOH HOH . D 4 HOH A 104 904 487 HOH HOH . D 4 HOH A 105 905 409 HOH HOH . D 4 HOH A 106 906 495 HOH HOH . D 4 HOH A 107 907 522 HOH HOH . D 4 HOH A 108 908 483 HOH HOH . D 4 HOH A 109 909 514 HOH HOH . D 4 HOH A 110 910 531 HOH HOH . D 4 HOH A 111 911 577 HOH HOH . D 4 HOH A 112 912 533 HOH HOH . D 4 HOH A 113 913 542 HOH HOH . D 4 HOH A 114 914 649 HOH HOH . D 4 HOH A 115 915 628 HOH HOH . D 4 HOH A 116 916 573 HOH HOH . D 4 HOH A 117 917 571 HOH HOH . D 4 HOH A 118 918 644 HOH HOH . D 4 HOH A 119 919 489 HOH HOH . D 4 HOH A 120 920 546 HOH HOH . D 4 HOH A 121 921 450 HOH HOH . D 4 HOH A 122 922 581 HOH HOH . D 4 HOH A 123 923 492 HOH HOH . D 4 HOH A 124 924 570 HOH HOH . D 4 HOH A 125 925 574 HOH HOH . D 4 HOH A 126 926 557 HOH HOH . D 4 HOH A 127 927 558 HOH HOH . D 4 HOH A 128 928 549 HOH HOH . D 4 HOH A 129 929 551 HOH HOH . D 4 HOH A 130 930 552 HOH HOH . D 4 HOH A 131 931 510 HOH HOH . D 4 HOH A 132 932 529 HOH HOH . D 4 HOH A 133 933 648 HOH HOH . D 4 HOH A 134 934 588 HOH HOH . D 4 HOH A 135 935 463 HOH HOH . D 4 HOH A 136 936 453 HOH HOH . D 4 HOH A 137 937 534 HOH HOH . D 4 HOH A 138 938 528 HOH HOH . D 4 HOH A 139 939 544 HOH HOH . D 4 HOH A 140 940 632 HOH HOH . D 4 HOH A 141 941 511 HOH HOH . D 4 HOH A 142 942 470 HOH HOH . D 4 HOH A 143 943 578 HOH HOH . D 4 HOH A 144 944 575 HOH HOH . D 4 HOH A 145 945 584 HOH HOH . D 4 HOH A 146 946 520 HOH HOH . D 4 HOH A 147 947 598 HOH HOH . D 4 HOH A 148 948 634 HOH HOH . D 4 HOH A 149 949 597 HOH HOH . D 4 HOH A 150 950 562 HOH HOH . D 4 HOH A 151 951 494 HOH HOH . D 4 HOH A 152 952 548 HOH HOH . D 4 HOH A 153 953 560 HOH HOH . D 4 HOH A 154 954 580 HOH HOH . D 4 HOH A 155 955 493 HOH HOH . D 4 HOH A 156 956 591 HOH HOH . D 4 HOH A 157 957 653 HOH HOH . D 4 HOH A 158 958 654 HOH HOH . D 4 HOH A 159 959 486 HOH HOH . D 4 HOH A 160 960 600 HOH HOH . D 4 HOH A 161 961 622 HOH HOH . D 4 HOH A 162 962 652 HOH HOH . D 4 HOH A 163 963 599 HOH HOH . D 4 HOH A 164 964 641 HOH HOH . D 4 HOH A 165 965 624 HOH HOH . D 4 HOH A 166 966 605 HOH HOH . D 4 HOH A 167 967 523 HOH HOH . D 4 HOH A 168 968 611 HOH HOH . D 4 HOH A 169 969 612 HOH HOH . D 4 HOH A 170 970 417 HOH HOH . D 4 HOH A 171 971 604 HOH HOH . D 4 HOH A 172 972 629 HOH HOH . D 4 HOH A 173 973 473 HOH HOH . D 4 HOH A 174 974 411 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GRY . . . C 3 68.404 22.777 10.26 0.45 57.38 ? N1 GRY 702 A 1 HETATM 2 N N3 GRY . . . C 3 63.65 18.533 11.849 0.45 45.66 ? N3 GRY 702 A 1 HETATM 3 C C4 GRY . . . C 3 69.224 23.832 10.404 0.45 57.03 ? C4 GRY 702 A 1 HETATM 4 C C5 GRY . . . C 3 69.09 24.627 11.666 0.45 58.27 ? C5 GRY 702 A 1 HETATM 5 C C6 GRY . . . C 3 68.53 22.059 9.13 0.45 54.76 ? C6 GRY 702 A 1 HETATM 6 C C7 GRY . . . C 3 66.698 20.395 9.67 0.45 51.38 ? C7 GRY 702 A 1 HETATM 7 C C8 GRY . . . C 3 66.64 19.008 9.773 0.45 49.43 ? C8 GRY 702 A 1 HETATM 8 C C10 GRY . . . C 3 64.647 19.148 11.123 0.45 48.53 ? C10 GRY 702 A 1 HETATM 9 C C1 GRY . . . C 3 71.198 23.66 7.204 0.45 50.65 ? C1 GRY 702 A 1 HETATM 10 C C2 GRY . . . C 3 70.221 23.38 8.306 0.45 54.18 ? C2 GRY 702 A 1 HETATM 11 C C3 GRY . . . C 3 70.149 24.164 9.437 0.45 55.11 ? C3 GRY 702 A 1 HETATM 12 N N2 GRY . . . C 3 67.74 20.975 8.904 0.45 53.5 ? N2 GRY 702 A 1 HETATM 13 C C9 GRY . . . C 3 65.639 18.395 10.495 0.45 48.41 ? C9 GRY 702 A 1 HETATM 14 C C11 GRY . . . C 3 64.696 20.536 11.005 0.45 48.01 ? C11 GRY 702 A 1 HETATM 15 C C12 GRY . . . C 3 65.706 21.148 10.291 0.45 49.36 ? C12 GRY 702 A 1 HETATM 16 N N4 GRY . . . C 3 69.41 22.32 8.144 0.45 52.1 ? N4 GRY 702 A 1 HETATM 17 H H1 GRY . . . C 3 63.636 17.658 11.918 0.45 46.52 ? H1 GRY 702 A 1 HETATM 18 H H2 GRY . . . C 3 63.033 19.017 12.24 0.45 46.52 ? H2 GRY 702 A 1 HETATM 19 H H3 GRY . . . C 3 68.406 24.232 12.23 0.45 57.86 ? H3 GRY 702 A 1 HETATM 20 H H4 GRY . . . C 3 68.841 25.541 11.45 0.45 57.86 ? H4 GRY 702 A 1 HETATM 21 H H5 GRY . . . C 3 69.937 24.629 12.141 0.45 57.86 ? H5 GRY 702 A 1 HETATM 22 H H6 GRY . . . C 3 67.304 18.482 9.355 0.45 49.57 ? H6 GRY 702 A 1 HETATM 23 H H7 GRY . . . C 3 71.124 22.976 6.519 0.45 51.67 ? H7 GRY 702 A 1 HETATM 24 H H8 GRY . . . C 3 72.1 23.66 7.562 0.45 51.69 ? H8 GRY 702 A 1 HETATM 25 H H9 GRY . . . C 3 71.007 24.528 6.813 0.45 51.69 ? H9 GRY 702 A 1 HETATM 26 H H10 GRY . . . C 3 70.723 24.904 9.549 0.45 55.26 ? H10 GRY 702 A 1 HETATM 27 H H11 GRY . . . C 3 67.91 20.564 8.151 0.45 53.26 ? H11 GRY 702 A 1 HETATM 28 H H12 GRY . . . C 3 65.619 17.454 10.565 0.45 48.72 ? H12 GRY 702 A 1 HETATM 29 H H13 GRY . . . C 3 64.037 21.061 11.431 0.45 48.51 ? H13 GRY 702 A 1 HETATM 30 H H14 GRY . . . C 3 65.723 22.088 10.22 0.45 49.45 ? H14 GRY 702 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #