data_7FSY # _model_server_result.job_id Sbi0KuxDjtkDZMxv48esRA _model_server_result.datetime_utc '2024-11-17 01:39:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fsy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":303}' # _entry.id 7FSY # _exptl.entry_id 7FSY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D-GLUTAMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.08 _cell.angle_gamma 90 _cell.entry_id 7FSY _cell.length_a 80.01 _cell.length_b 49.65 _cell.length_c 116.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,U 1 1 B,G,H,I,V 2 1 C,J,K,L,M,W 3 1 D,N,O,P,Q,R,S,T,X 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 S N N # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id DGL _chem_comp.mon_nstd_flag . _chem_comp.name 'D-GLUTAMIC ACID' _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA DGL sing 83 n n N H DGL sing 84 n n N H2 DGL sing 85 n n CA C DGL sing 86 n n CA CB DGL sing 87 n n CA HA DGL sing 88 n n C O DGL doub 89 n n C OXT DGL sing 90 n n CB CG DGL sing 91 n n CB HB2 DGL sing 92 n n CB HB3 DGL sing 93 n n CG CD DGL sing 94 n n CG HG2 DGL sing 95 n n CG HG3 DGL sing 96 n n CD OE1 DGL doub 97 n n CD OE2 DGL sing 98 n n OE2 HE2 DGL sing 99 n n OXT HXT DGL sing 100 n n # _atom_sites.entry_id 7FSY _atom_sites.fract_transf_matrix[1][1] 0.012498 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001111 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 YG5 A 1 301 301 YG5 LIG . F 3 EDO A 1 302 1 EDO EDO . G 3 EDO B 1 301 2 EDO EDO . H 3 EDO B 1 302 3 EDO EDO . I 4 DGL B 1 303 1 DGL DGL . J 3 EDO C 1 301 4 EDO EDO . K 3 EDO C 1 302 7 EDO EDO . L 3 EDO C 1 303 8 EDO EDO . M 5 GLY C 1 304 1 GLY GLY . N 3 EDO D 1 301 5 EDO EDO . O 3 EDO D 1 302 6 EDO EDO . P 6 SO4 D 1 303 1 SO4 SO4 . Q 6 SO4 D 1 304 2 SO4 SO4 . R 7 ALA D 1 305 1 ALA ALA . S 4 DGL D 1 306 2 DGL DGL . T 5 GLY D 1 307 1 GLY GLY . U 8 HOH A 1 401 14 HOH HOH . U 8 HOH A 2 402 236 HOH HOH . U 8 HOH A 3 403 328 HOH HOH . U 8 HOH A 4 404 79 HOH HOH . U 8 HOH A 5 405 73 HOH HOH . U 8 HOH A 6 406 120 HOH HOH . U 8 HOH A 7 407 217 HOH HOH . U 8 HOH A 8 408 113 HOH HOH . U 8 HOH A 9 409 142 HOH HOH . U 8 HOH A 10 410 103 HOH HOH . U 8 HOH A 11 411 127 HOH HOH . U 8 HOH A 12 412 289 HOH HOH . U 8 HOH A 13 413 342 HOH HOH . U 8 HOH A 14 414 83 HOH HOH . U 8 HOH A 15 415 133 HOH HOH . U 8 HOH A 16 416 251 HOH HOH . U 8 HOH A 17 417 384 HOH HOH . U 8 HOH A 18 418 49 HOH HOH . U 8 HOH A 19 419 34 HOH HOH . U 8 HOH A 20 420 114 HOH HOH . U 8 HOH A 21 421 365 HOH HOH . U 8 HOH A 22 422 383 HOH HOH . U 8 HOH A 23 423 294 HOH HOH . U 8 HOH A 24 424 363 HOH HOH . V 8 HOH B 1 401 214 HOH HOH . V 8 HOH B 2 402 211 HOH HOH . V 8 HOH B 3 403 323 HOH HOH . V 8 HOH B 4 404 130 HOH HOH . V 8 HOH B 5 405 13 HOH HOH . V 8 HOH B 6 406 96 HOH HOH . V 8 HOH B 7 407 51 HOH HOH . V 8 HOH B 8 408 15 HOH HOH . V 8 HOH B 9 409 37 HOH HOH . V 8 HOH B 10 410 128 HOH HOH . V 8 HOH B 11 411 335 HOH HOH . V 8 HOH B 12 412 362 HOH HOH . V 8 HOH B 13 413 63 HOH HOH . V 8 HOH B 14 414 341 HOH HOH . V 8 HOH B 15 415 163 HOH HOH . V 8 HOH B 16 416 276 HOH HOH . V 8 HOH B 17 417 333 HOH HOH . V 8 HOH B 18 418 379 HOH HOH . V 8 HOH B 19 419 118 HOH HOH . V 8 HOH B 20 420 85 HOH HOH . V 8 HOH B 21 421 135 HOH HOH . V 8 HOH B 22 422 274 HOH HOH . V 8 HOH B 23 423 23 HOH HOH . V 8 HOH B 24 424 327 HOH HOH . V 8 HOH B 25 425 69 HOH HOH . V 8 HOH B 26 426 299 HOH HOH . V 8 HOH B 27 427 331 HOH HOH . V 8 HOH B 28 428 205 HOH HOH . V 8 HOH B 29 429 156 HOH HOH . V 8 HOH B 30 430 210 HOH HOH . V 8 HOH B 31 431 332 HOH HOH . V 8 HOH B 32 432 376 HOH HOH . V 8 HOH B 33 433 240 HOH HOH . V 8 HOH B 34 434 88 HOH HOH . V 8 HOH B 35 435 372 HOH HOH . V 8 HOH B 36 436 366 HOH HOH . V 8 HOH B 37 437 280 HOH HOH . V 8 HOH B 38 438 380 HOH HOH . V 8 HOH B 39 439 220 HOH HOH . V 8 HOH B 40 440 221 HOH HOH . V 8 HOH B 41 441 232 HOH HOH . V 8 HOH B 42 442 207 HOH HOH . V 8 HOH B 43 443 132 HOH HOH . W 8 HOH C 1 401 46 HOH HOH . W 8 HOH C 2 402 212 HOH HOH . W 8 HOH C 3 403 350 HOH HOH . W 8 HOH C 4 404 97 HOH HOH . W 8 HOH C 5 405 203 HOH HOH . W 8 HOH C 6 406 368 HOH HOH . W 8 HOH C 7 407 27 HOH HOH . W 8 HOH C 8 408 141 HOH HOH . W 8 HOH C 9 409 150 HOH HOH . W 8 HOH C 10 410 181 HOH HOH . W 8 HOH C 11 411 12 HOH HOH . W 8 HOH C 12 412 325 HOH HOH . W 8 HOH C 13 413 123 HOH HOH . W 8 HOH C 14 414 339 HOH HOH . W 8 HOH C 15 415 28 HOH HOH . W 8 HOH C 16 416 110 HOH HOH . W 8 HOH C 17 417 337 HOH HOH . W 8 HOH C 18 418 201 HOH HOH . W 8 HOH C 19 419 125 HOH HOH . W 8 HOH C 20 420 284 HOH HOH . W 8 HOH C 21 421 111 HOH HOH . W 8 HOH C 22 422 136 HOH HOH . W 8 HOH C 23 423 50 HOH HOH . W 8 HOH C 24 424 149 HOH HOH . W 8 HOH C 25 425 195 HOH HOH . W 8 HOH C 26 426 213 HOH HOH . W 8 HOH C 27 427 265 HOH HOH . W 8 HOH C 28 428 346 HOH HOH . W 8 HOH C 29 429 377 HOH HOH . W 8 HOH C 30 430 369 HOH HOH . W 8 HOH C 31 431 313 HOH HOH . W 8 HOH C 32 432 124 HOH HOH . X 8 HOH D 1 401 183 HOH HOH . X 8 HOH D 2 402 169 HOH HOH . X 8 HOH D 3 403 267 HOH HOH . X 8 HOH D 4 404 167 HOH HOH . X 8 HOH D 5 405 147 HOH HOH . X 8 HOH D 6 406 25 HOH HOH . X 8 HOH D 7 407 3 HOH HOH . X 8 HOH D 8 408 11 HOH HOH . X 8 HOH D 9 409 242 HOH HOH . X 8 HOH D 10 410 177 HOH HOH . X 8 HOH D 11 411 176 HOH HOH . X 8 HOH D 12 412 32 HOH HOH . X 8 HOH D 13 413 352 HOH HOH . X 8 HOH D 14 414 158 HOH HOH . X 8 HOH D 15 415 47 HOH HOH . X 8 HOH D 16 416 238 HOH HOH . X 8 HOH D 17 417 382 HOH HOH . X 8 HOH D 18 418 20 HOH HOH . X 8 HOH D 19 419 16 HOH HOH . X 8 HOH D 20 420 80 HOH HOH . X 8 HOH D 21 421 295 HOH HOH . X 8 HOH D 22 422 262 HOH HOH . X 8 HOH D 23 423 72 HOH HOH . X 8 HOH D 24 424 234 HOH HOH . X 8 HOH D 25 425 261 HOH HOH . X 8 HOH D 26 426 330 HOH HOH . X 8 HOH D 27 427 189 HOH HOH . X 8 HOH D 28 428 26 HOH HOH . X 8 HOH D 29 429 268 HOH HOH . X 8 HOH D 30 430 200 HOH HOH . X 8 HOH D 31 431 367 HOH HOH . X 8 HOH D 32 432 381 HOH HOH . X 8 HOH D 33 433 297 HOH HOH . X 8 HOH D 34 434 192 HOH HOH . X 8 HOH D 35 435 343 HOH HOH . X 8 HOH D 36 436 255 HOH HOH . X 8 HOH D 37 437 324 HOH HOH . X 8 HOH D 38 438 121 HOH HOH . X 8 HOH D 39 439 87 HOH HOH . X 8 HOH D 40 440 227 HOH HOH . X 8 HOH D 41 441 84 HOH HOH . X 8 HOH D 42 442 359 HOH HOH . X 8 HOH D 43 443 139 HOH HOH . X 8 HOH D 44 444 286 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DGL . . . I 4 -54.092 -22.756 -29.716 1 108.04 ? N DGL 303 B 1 HETATM 2 C CA DGL . . . I 4 -53.275 -22.417 -28.518 1 104.03 ? CA DGL 303 B 1 HETATM 3 C C DGL . . . I 4 -53.123 -20.886 -28.422 1 91.73 ? C DGL 303 B 1 HETATM 4 O O DGL . . . I 4 -54.065 -20.18 -28.864 1 81.72 ? O DGL 303 B 1 HETATM 5 C CB DGL . . . I 4 -53.879 -23.128 -27.298 1 105.46 ? CB DGL 303 B 1 HETATM 6 C CG DGL . . . I 4 -55.303 -22.728 -26.922 1 97.72 ? CG DGL 303 B 1 HETATM 7 C CD DGL . . . I 4 -55.482 -22.294 -25.474 1 94.54 ? CD DGL 303 B 1 HETATM 8 O OE1 DGL . . . I 4 -56.15 -21.26 -25.255 1 100.17 ? OE1 DGL 303 B 1 HETATM 9 O OE2 DGL . . . I 4 -54.966 -23.001 -24.564 1 83.17 ? OE2 DGL 303 B 1 HETATM 10 O OXT DGL . . . I 4 -52.042 -20.446 -27.955 1 70.4 ? OXT DGL 303 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #