data_7FUM # _model_server_result.job_id pni4D7roctEKzNp_CUwq5A _model_server_result.datetime_utc '2024-10-15 11:29:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7fum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 7FUM # _exptl.entry_id 7FUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.982 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5M)-2-[(4-benzylpiperazin-1-yl)methyl]-5-(2-chloro-4-methylphenyl)-1H-benzimidazole-7-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7FUM _cell.length_a 44.966 _cell.length_b 59.56 _cell.length_c 165.119 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 230 A HIS 390 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc2 A SG CYS 236 A CYS 396 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc3 A SG CYS 237 A CYS 397 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc4 A SG CYS 244 A CYS 404 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? # _chem_comp.formula 'C27 H27 Cl N4 O2' _chem_comp.formula_weight 474.982 _chem_comp.id YU6 _chem_comp.mon_nstd_flag . _chem_comp.name '(5M)-2-[(4-benzylpiperazin-1-yl)methyl]-5-(2-chloro-4-methylphenyl)-1H-benzimidazole-7-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 YU6 sing 376 n n C1 C15 YU6 sing 377 n n N2 C3 YU6 sing 378 n n N2 C7 YU6 sing 379 n n C3 C4 YU6 sing 380 n n C4 N5 YU6 sing 381 n n N5 C6 YU6 sing 382 n n N5 C8 YU6 sing 383 n n C6 C7 YU6 sing 384 n n C8 C9 YU6 sing 385 n n C9 C10 YU6 doub 386 n y C9 C14 YU6 sing 387 n y C10 C11 YU6 sing 388 n y C11 C12 YU6 doub 389 n y C12 C13 YU6 sing 390 n y C13 C14 YU6 doub 391 n y C15 N16 YU6 sing 392 n y C15 N19 YU6 doub 393 n y N16 C17 YU6 sing 394 n y C17 C18 YU6 doub 395 n y C17 C31 YU6 sing 396 n y C18 N19 YU6 sing 397 n y C18 C20 YU6 sing 398 n y C20 C21 YU6 doub 399 n y C21 C22 YU6 sing 400 n n C21 C30 YU6 sing 401 n y C22 C23 YU6 doub 402 n y C22 C29 YU6 sing 403 n y C23 CL24 YU6 sing 404 n n C23 C25 YU6 sing 405 n y C25 C26 YU6 doub 406 n y C26 C27 YU6 sing 407 n n C26 C28 YU6 sing 408 n y C28 C29 YU6 doub 409 n y C30 C31 YU6 doub 410 n y C31 C32 YU6 sing 411 n n C32 O33 YU6 doub 412 n n C32 O34 YU6 sing 413 n n C10 H47 YU6 sing 414 n n C11 H48 YU6 sing 415 n n C13 H50 YU6 sing 416 n n C20 H53 YU6 sing 417 n n C25 H54 YU6 sing 418 n n C27 H56 YU6 sing 419 n n C27 H57 YU6 sing 420 n n C27 H55 YU6 sing 421 n n C28 H58 YU6 sing 422 n n C1 H35 YU6 sing 423 n n C1 H36 YU6 sing 424 n n C12 H49 YU6 sing 425 n n C14 H51 YU6 sing 426 n n C29 H59 YU6 sing 427 n n C3 H38 YU6 sing 428 n n C3 H37 YU6 sing 429 n n C30 H60 YU6 sing 430 n n C4 H39 YU6 sing 431 n n C4 H40 YU6 sing 432 n n C6 H42 YU6 sing 433 n n C6 H41 YU6 sing 434 n n C7 H44 YU6 sing 435 n n C7 H43 YU6 sing 436 n n C8 H45 YU6 sing 437 n n C8 H46 YU6 sing 438 n n N16 H52 YU6 sing 439 n n O34 H4 YU6 sing 440 n n # _atom_sites.entry_id 7FUM _atom_sites.fract_transf_matrix[1][1] 0.022239 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 601 600 ZN ZN . C 3 YU6 A 1 602 701 YU6 L0R . D 4 HOH A 1 701 49 HOH HOH . D 4 HOH A 2 702 17 HOH HOH . D 4 HOH A 3 703 21 HOH HOH . D 4 HOH A 4 704 36 HOH HOH . D 4 HOH A 5 705 22 HOH HOH . D 4 HOH A 6 706 11 HOH HOH . D 4 HOH A 7 707 27 HOH HOH . D 4 HOH A 8 708 35 HOH HOH . D 4 HOH A 9 709 52 HOH HOH . D 4 HOH A 10 710 47 HOH HOH . D 4 HOH A 11 711 37 HOH HOH . D 4 HOH A 12 712 31 HOH HOH . D 4 HOH A 13 713 6 HOH HOH . D 4 HOH A 14 714 29 HOH HOH . D 4 HOH A 15 715 18 HOH HOH . D 4 HOH A 16 716 32 HOH HOH . D 4 HOH A 17 717 42 HOH HOH . D 4 HOH A 18 718 2 HOH HOH . D 4 HOH A 19 719 44 HOH HOH . D 4 HOH A 20 720 50 HOH HOH . D 4 HOH A 21 721 5 HOH HOH . D 4 HOH A 22 722 45 HOH HOH . D 4 HOH A 23 723 25 HOH HOH . D 4 HOH A 24 724 3 HOH HOH . D 4 HOH A 25 725 8 HOH HOH . D 4 HOH A 26 726 20 HOH HOH . D 4 HOH A 27 727 12 HOH HOH . D 4 HOH A 28 728 16 HOH HOH . D 4 HOH A 29 729 1 HOH HOH . D 4 HOH A 30 730 4 HOH HOH . D 4 HOH A 31 731 33 HOH HOH . D 4 HOH A 32 732 28 HOH HOH . D 4 HOH A 33 733 15 HOH HOH . D 4 HOH A 34 734 30 HOH HOH . D 4 HOH A 35 735 7 HOH HOH . D 4 HOH A 36 736 13 HOH HOH . D 4 HOH A 37 737 48 HOH HOH . D 4 HOH A 38 738 38 HOH HOH . D 4 HOH A 39 739 24 HOH HOH . D 4 HOH A 40 740 23 HOH HOH . D 4 HOH A 41 741 53 HOH HOH . D 4 HOH A 42 742 51 HOH HOH . D 4 HOH A 43 743 40 HOH HOH . D 4 HOH A 44 744 34 HOH HOH . D 4 HOH A 45 745 26 HOH HOH . D 4 HOH A 46 746 19 HOH HOH . D 4 HOH A 47 747 46 HOH HOH . D 4 HOH A 48 748 43 HOH HOH . D 4 HOH A 49 749 41 HOH HOH . D 4 HOH A 50 750 10 HOH HOH . D 4 HOH A 51 751 14 HOH HOH . D 4 HOH A 52 752 9 HOH HOH . D 4 HOH A 53 753 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 YU6 . . . C 3 0.004 -23.034 -22.748 1 66.86 ? C10 YU6 602 A 1 HETATM 2 C C11 YU6 . . . C 3 -0.975 -23.227 -21.781 1 65.82 ? C11 YU6 602 A 1 HETATM 3 C C13 YU6 . . . C 3 0.72 -23.386 -20.101 1 69.93 ? C13 YU6 602 A 1 HETATM 4 C C15 YU6 . . . C 3 5.405 -17.15 -22.728 1 51.61 ? C15 YU6 602 A 1 HETATM 5 C C17 YU6 . . . C 3 6.648 -17.199 -20.913 1 42.14 ? C17 YU6 602 A 1 HETATM 6 C C18 YU6 . . . C 3 5.636 -16.242 -20.79 1 40.67 ? C18 YU6 602 A 1 HETATM 7 C C20 YU6 . . . C 3 5.56 -15.43 -19.655 1 40.46 ? C20 YU6 602 A 1 HETATM 8 C C21 YU6 . . . C 3 6.504 -15.577 -18.634 1 42.68 ? C21 YU6 602 A 1 HETATM 9 C C22 YU6 . . . C 3 6.457 -14.683 -17.445 1 47.09 ? C22 YU6 602 A 1 HETATM 10 C C23 YU6 . . . C 3 6.974 -13.372 -17.465 1 51.63 ? C23 YU6 602 A 1 HETATM 11 C C25 YU6 . . . C 3 6.937 -12.56 -16.348 1 44.88 ? C25 YU6 602 A 1 HETATM 12 C C26 YU6 . . . C 3 6.351 -13.014 -15.172 1 44.65 ? C26 YU6 602 A 1 HETATM 13 C C27 YU6 . . . C 3 6.304 -12.135 -13.941 1 42.49 ? C27 YU6 602 A 1 HETATM 14 C C28 YU6 . . . C 3 5.834 -14.306 -15.142 1 43.03 ? C28 YU6 602 A 1 HETATM 15 C C1 YU6 . . . C 3 4.794 -17.639 -24.003 1 60.45 ? C1 YU6 602 A 1 HETATM 16 C C12 YU6 . . . C 3 -0.617 -23.412 -20.459 1 68.14 ? C12 YU6 602 A 1 HETATM 17 C C14 YU6 . . . C 3 1.699 -23.18 -21.066 1 68.49 ? C14 YU6 602 A 1 HETATM 18 C C29 YU6 . . . C 3 5.882 -15.134 -16.254 1 42.52 ? C29 YU6 602 A 1 HETATM 19 C C3 YU6 . . . C 3 3.876 -19.625 -25.1 1 64.91 ? C3 YU6 602 A 1 HETATM 20 C C30 YU6 . . . C 3 7.586 -16.445 -18.82 1 38.7 ? C30 YU6 602 A 1 HETATM 21 C C31 YU6 . . . C 3 7.604 -17.348 -19.887 1 39.71 ? C31 YU6 602 A 1 HETATM 22 C C32 YU6 . . . C 3 8.725 -18.355 -19.938 1 44.44 ? C32 YU6 602 A 1 HETATM 23 C C4 YU6 . . . C 3 3.561 -21.111 -24.86 1 63.55 ? C4 YU6 602 A 1 HETATM 24 C C6 YU6 . . . C 3 2.842 -20.497 -22.578 1 61.71 ? C6 YU6 602 A 1 HETATM 25 C C7 YU6 . . . C 3 3.12 -19.047 -22.933 1 62.03 ? C7 YU6 602 A 1 HETATM 26 C C8 YU6 . . . C 3 2.412 -22.736 -23.446 1 68.63 ? C8 YU6 602 A 1 HETATM 27 C C9 YU6 . . . C 3 1.354 -23.026 -22.405 1 68.2 ? C9 YU6 602 A 1 HETATM 28 N N16 YU6 . . . C 3 6.439 -17.797 -22.138 1 45.38 ? N16 YU6 602 A 1 HETATM 29 N N19 YU6 . . . C 3 4.867 -16.231 -21.95 1 48.37 ? N19 YU6 602 A 1 HETATM 30 N N2 YU6 . . . C 3 4.267 -18.994 -23.837 1 64.61 ? N2 YU6 602 A 1 HETATM 31 N N5 YU6 . . . C 3 2.543 -21.306 -23.788 1 64.98 ? N5 YU6 602 A 1 HETATM 32 O O33 YU6 . . . C 3 8.792 -19.082 -20.949 1 50.15 ? O33 YU6 602 A 1 HETATM 33 O O34 YU6 . . . C 3 9.555 -18.385 -18.986 1 46.41 ? O34 YU6 602 A 1 HETATM 34 CL CL24 YU6 . . . C 3 7.66 -12.734 -18.934 1 52.3 ? CL24 YU6 602 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #